Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08960

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08955 and OKGIIK_08960 are separated by 20 nucleotidesOKGIIK_08960 and OKGIIK_08965 are separated by 350 nucleotides OKGIIK_08955: OKGIIK_08955 - Type I restriction enzyme endonuclease subunit, at 1,922,693 to 1,926,112 _08955 OKGIIK_08960: OKGIIK_08960 - Restriction endonuclease subunit S, at 1,926,133 to 1,927,041 _08960 OKGIIK_08965: OKGIIK_08965 - Site-specific DNA-methyltransferase (adenine-specific), at 1,927,392 to 1,929,506 _08965 Position (kb) 1926 1927 1928Strain fitness (log2 ratio) -3 -2 -1 0 1at 1925.439 kb on + strand, within OKGIIK_08955at 1925.440 kb on - strand, within OKGIIK_08955at 1925.440 kb on - strand, within OKGIIK_08955at 1925.550 kb on + strand, within OKGIIK_08955at 1925.551 kb on - strand, within OKGIIK_08955at 1925.551 kb on - strand, within OKGIIK_08955at 1925.551 kb on - strand, within OKGIIK_08955at 1925.551 kb on - strand, within OKGIIK_08955at 1925.593 kb on - strand, within OKGIIK_08955at 1925.664 kb on + strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.823 kb on + strandat 1925.823 kb on + strandat 1926.024 kb on + strandat 1926.025 kb on - strandat 1926.025 kb on - strandat 1926.025 kb on - strandat 1926.136 kb on + strandat 1926.136 kb on + strandat 1926.136 kb on + strandat 1926.137 kb on - strandat 1926.137 kb on - strandat 1926.137 kb on - strandat 1926.138 kb on - strandat 1926.215 kb on - strandat 1926.215 kb on - strandat 1926.229 kb on + strand, within OKGIIK_08960at 1926.257 kb on - strand, within OKGIIK_08960at 1926.353 kb on + strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.398 kb on + strand, within OKGIIK_08960at 1926.398 kb on + strand, within OKGIIK_08960at 1926.399 kb on - strand, within OKGIIK_08960at 1926.399 kb on - strand, within OKGIIK_08960at 1926.404 kb on + strand, within OKGIIK_08960at 1926.404 kb on + strand, within OKGIIK_08960at 1926.405 kb on - strand, within OKGIIK_08960at 1926.405 kb on - strand, within OKGIIK_08960at 1926.499 kb on + strand, within OKGIIK_08960at 1926.499 kb on + strand, within OKGIIK_08960at 1926.499 kb on + strand, within OKGIIK_08960at 1926.500 kb on - strand, within OKGIIK_08960at 1926.500 kb on - strand, within OKGIIK_08960at 1926.561 kb on - strand, within OKGIIK_08960at 1926.561 kb on - strand, within OKGIIK_08960at 1926.736 kb on - strand, within OKGIIK_08960at 1926.736 kb on - strand, within OKGIIK_08960at 1926.736 kb on - strand, within OKGIIK_08960at 1926.984 kb on + strandat 1926.984 kb on + strandat 1926.984 kb on + strandat 1926.984 kb on + strandat 1926.985 kb on - strandat 1926.985 kb on - strandat 1926.985 kb on - strandat 1927.055 kb on + strandat 1927.055 kb on + strandat 1927.055 kb on + strandat 1927.055 kb on + strandat 1927.055 kb on + strandat 1927.056 kb on - strandat 1927.056 kb on - strandat 1927.056 kb on - strandat 1927.056 kb on - strandat 1927.056 kb on - strandat 1927.058 kb on + strandat 1927.058 kb on + strandat 1927.059 kb on - strandat 1927.059 kb on - strandat 1927.147 kb on + strandat 1927.229 kb on + strandat 1927.229 kb on + strandat 1927.229 kb on + strandat 1927.230 kb on - strandat 1927.230 kb on - strandat 1927.230 kb on - strandat 1927.230 kb on - strandat 1927.230 kb on - strandat 1927.230 kb on - strandat 1927.297 kb on + strandat 1927.297 kb on + strandat 1927.297 kb on + strandat 1927.297 kb on + strandat 1927.298 kb on - strandat 1927.298 kb on - strandat 1927.472 kb on + strandat 1927.472 kb on + strandat 1927.540 kb on + strandat 1927.540 kb on + strandat 1927.540 kb on + strandat 1927.540 kb on + strandat 1927.673 kb on - strand, within OKGIIK_08965

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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1,925,439 + OKGIIK_08955 0.80 -2.6
1,925,440 - OKGIIK_08955 0.80 -0.4
1,925,440 - OKGIIK_08955 0.80 -0.5
1,925,550 + OKGIIK_08955 0.84 +0.3
1,925,551 - OKGIIK_08955 0.84 -1.4
1,925,551 - OKGIIK_08955 0.84 -0.8
1,925,551 - OKGIIK_08955 0.84 -0.1
1,925,551 - OKGIIK_08955 0.84 +0.0
1,925,593 - OKGIIK_08955 0.85 +0.1
1,925,664 + OKGIIK_08955 0.87 +0.3
1,925,665 - OKGIIK_08955 0.87 -0.8
1,925,665 - OKGIIK_08955 0.87 -0.6
1,925,665 - OKGIIK_08955 0.87 -1.2
1,925,665 - OKGIIK_08955 0.87 -2.8
1,925,665 - OKGIIK_08955 0.87 +0.8
1,925,823 + -0.1
1,925,823 + -0.2
1,926,024 + +0.2
1,926,025 - +0.5
1,926,025 - +0.7
1,926,025 - -0.0
1,926,136 + -0.2
1,926,136 + -0.1
1,926,136 + +1.4
1,926,137 - +1.4
1,926,137 - -2.0
1,926,137 - +0.6
1,926,138 - -0.0
1,926,215 - +0.5
1,926,215 - +0.8
1,926,229 + OKGIIK_08960 0.11 -2.3
1,926,257 - OKGIIK_08960 0.14 -0.8
1,926,353 + OKGIIK_08960 0.24 -0.6
1,926,362 - OKGIIK_08960 0.25 +0.5
1,926,362 - OKGIIK_08960 0.25 +0.1
1,926,362 - OKGIIK_08960 0.25 -0.7
1,926,362 - OKGIIK_08960 0.25 +0.6
1,926,362 - OKGIIK_08960 0.25 -0.6
1,926,398 + OKGIIK_08960 0.29 -0.1
1,926,398 + OKGIIK_08960 0.29 -0.0
1,926,399 - OKGIIK_08960 0.29 -0.7
1,926,399 - OKGIIK_08960 0.29 +0.1
1,926,404 + OKGIIK_08960 0.30 +1.2
1,926,404 + OKGIIK_08960 0.30 -0.8
1,926,405 - OKGIIK_08960 0.30 -0.5
1,926,405 - OKGIIK_08960 0.30 -0.1
1,926,499 + OKGIIK_08960 0.40 -0.8
1,926,499 + OKGIIK_08960 0.40 -1.7
1,926,499 + OKGIIK_08960 0.40 -0.9
1,926,500 - OKGIIK_08960 0.40 -0.8
1,926,500 - OKGIIK_08960 0.40 -0.2
1,926,561 - OKGIIK_08960 0.47 -1.4
1,926,561 - OKGIIK_08960 0.47 -1.2
1,926,736 - OKGIIK_08960 0.66 +0.4
1,926,736 - OKGIIK_08960 0.66 -0.2
1,926,736 - OKGIIK_08960 0.66 -0.9
1,926,984 + -1.2
1,926,984 + -2.0
1,926,984 + -1.4
1,926,984 + +0.3
1,926,985 - +0.4
1,926,985 - +0.2
1,926,985 - -0.4
1,927,055 + +1.4
1,927,055 + -1.8
1,927,055 + -2.2
1,927,055 + +0.8
1,927,055 + +0.3
1,927,056 - -0.0
1,927,056 - -2.3
1,927,056 - -0.2
1,927,056 - +0.4
1,927,056 - -0.6
1,927,058 + +0.6
1,927,058 + -1.1
1,927,059 - +0.2
1,927,059 - -0.9
1,927,147 + -1.5
1,927,229 + +1.2
1,927,229 + +0.1
1,927,229 + -0.2
1,927,230 - -1.4
1,927,230 - +0.5
1,927,230 - -1.0
1,927,230 - +0.9
1,927,230 - -2.7
1,927,230 - +1.0
1,927,297 + +1.2
1,927,297 + +1.0
1,927,297 + -0.6
1,927,297 + -2.3
1,927,298 - -0.2
1,927,298 - -0.2
1,927,472 + +0.2
1,927,472 + -0.1
1,927,540 + -0.4
1,927,540 + +1.2
1,927,540 + +0.5
1,927,540 + +0.5
1,927,673 - OKGIIK_08965 0.13 +0.5

Or see this region's nucleotide sequence