Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07130

Experiment: R2A_PIPES with Cobalt chloride 512 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntbamB and OKGIIK_07125 overlap by 4 nucleotidesOKGIIK_07125 and OKGIIK_07130 are separated by 157 nucleotidesOKGIIK_07130 and pilW overlap by 4 nucleotidespilW and rlmN overlap by 11 nucleotides OKGIIK_07120: bamB - outer membrane protein assembly factor BamB, at 1,575,550 to 1,576,746 bamB OKGIIK_07125: OKGIIK_07125 - Ancillary SecYEG translocon subunit, at 1,576,743 to 1,577,393 _07125 OKGIIK_07130: OKGIIK_07130 - DUF4115 domain-containing protein, at 1,577,551 to 1,578,549 _07130 OKGIIK_07135: pilW - type IV pilus biogenesis/stability protein PilW, at 1,578,546 to 1,579,334 pilW OKGIIK_07140: rlmN - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 1,579,324 to 1,580,490 rlmN Position (kb) 1577 1578 1579Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1576.919 kb on - strand, within OKGIIK_07125at 1576.919 kb on - strand, within OKGIIK_07125at 1577.121 kb on + strand, within OKGIIK_07125at 1577.122 kb on - strand, within OKGIIK_07125at 1577.143 kb on + strand, within OKGIIK_07125at 1577.144 kb on - strand, within OKGIIK_07125at 1577.221 kb on + strand, within OKGIIK_07125at 1577.221 kb on + strand, within OKGIIK_07125at 1577.222 kb on - strand, within OKGIIK_07125at 1577.368 kb on + strandat 1577.368 kb on + strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.377 kb on + strandat 1577.377 kb on + strandat 1577.378 kb on - strandat 1577.378 kb on - strandat 1577.512 kb on + strandat 1577.513 kb on - strandat 1577.656 kb on + strand, within OKGIIK_07130at 1577.656 kb on + strand, within OKGIIK_07130at 1577.656 kb on + strand, within OKGIIK_07130at 1577.656 kb on + strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1578.620 kb on - strandat 1578.690 kb on - strand, within pilWat 1578.690 kb on - strand, within pilWat 1578.690 kb on - strand, within pilWat 1578.755 kb on - strand, within pilWat 1578.755 kb on - strand, within pilWat 1578.755 kb on - strand, within pilWat 1578.865 kb on - strand, within pilWat 1578.865 kb on - strand, within pilWat 1578.865 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.902 kb on - strand, within pilWat 1578.932 kb on - strand, within pilWat 1578.932 kb on - strand, within pilWat 1579.018 kb on - strand, within pilWat 1579.070 kb on - strand, within pilWat 1579.070 kb on - strand, within pilWat 1579.070 kb on - strand, within pilWat 1579.070 kb on - strand, within pilWat 1579.070 kb on - strand, within pilWat 1579.070 kb on - strand, within pilWat 1579.103 kb on - strand, within pilWat 1579.103 kb on - strand, within pilWat 1579.103 kb on - strand, within pilWat 1579.103 kb on - strand, within pilWat 1579.103 kb on - strand, within pilWat 1579.168 kb on - strand, within pilWat 1579.168 kb on - strand, within pilWat 1579.168 kb on - strand, within pilWat 1579.168 kb on - strand, within pilWat 1579.172 kb on - strand, within pilW

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
remove
1,576,919 - OKGIIK_07125 0.27 -0.1
1,576,919 - OKGIIK_07125 0.27 -1.5
1,577,121 + OKGIIK_07125 0.58 -2.2
1,577,122 - OKGIIK_07125 0.58 -0.6
1,577,143 + OKGIIK_07125 0.61 -1.1
1,577,144 - OKGIIK_07125 0.62 +0.6
1,577,221 + OKGIIK_07125 0.73 +0.2
1,577,221 + OKGIIK_07125 0.73 -1.6
1,577,222 - OKGIIK_07125 0.74 +0.7
1,577,368 + -2.6
1,577,368 + -1.0
1,577,369 - -0.7
1,577,369 - -0.8
1,577,369 - -0.8
1,577,369 - -0.5
1,577,369 - -1.3
1,577,369 - -0.6
1,577,377 + -0.4
1,577,377 + -0.4
1,577,378 - +0.2
1,577,378 - -0.8
1,577,512 + +0.3
1,577,513 - -1.8
1,577,656 + OKGIIK_07130 0.11 +0.8
1,577,656 + OKGIIK_07130 0.11 -1.1
1,577,656 + OKGIIK_07130 0.11 +2.0
1,577,656 + OKGIIK_07130 0.11 -0.8
1,577,657 - OKGIIK_07130 0.11 -0.8
1,577,657 - OKGIIK_07130 0.11 -2.4
1,577,657 - OKGIIK_07130 0.11 +1.2
1,577,657 - OKGIIK_07130 0.11 -0.1
1,577,657 - OKGIIK_07130 0.11 +0.1
1,577,657 - OKGIIK_07130 0.11 +0.2
1,577,657 - OKGIIK_07130 0.11 +0.4
1,577,657 - OKGIIK_07130 0.11 +0.7
1,577,657 - OKGIIK_07130 0.11 +0.8
1,577,657 - OKGIIK_07130 0.11 +0.3
1,577,657 - OKGIIK_07130 0.11 +0.7
1,577,657 - OKGIIK_07130 0.11 +0.2
1,577,657 - OKGIIK_07130 0.11 +1.5
1,577,657 - OKGIIK_07130 0.11 -1.8
1,577,657 - OKGIIK_07130 0.11 +0.6
1,577,657 - OKGIIK_07130 0.11 -1.0
1,577,657 - OKGIIK_07130 0.11 -2.4
1,577,657 - OKGIIK_07130 0.11 +0.9
1,577,657 - OKGIIK_07130 0.11 -0.5
1,577,657 - OKGIIK_07130 0.11 -1.0
1,577,657 - OKGIIK_07130 0.11 -0.5
1,578,620 - -0.6
1,578,690 - pilW OKGIIK_07135 0.18 +0.6
1,578,690 - pilW OKGIIK_07135 0.18 -3.6
1,578,690 - pilW OKGIIK_07135 0.18 +0.3
1,578,755 - pilW OKGIIK_07135 0.26 -1.8
1,578,755 - pilW OKGIIK_07135 0.26 -0.2
1,578,755 - pilW OKGIIK_07135 0.26 +0.6
1,578,865 - pilW OKGIIK_07135 0.40 -1.2
1,578,865 - pilW OKGIIK_07135 0.40 -2.5
1,578,865 - pilW OKGIIK_07135 0.40 +0.0
1,578,902 - pilW OKGIIK_07135 0.45 -0.7
1,578,902 - pilW OKGIIK_07135 0.45 -0.2
1,578,902 - pilW OKGIIK_07135 0.45 -1.1
1,578,902 - pilW OKGIIK_07135 0.45 -1.4
1,578,902 - pilW OKGIIK_07135 0.45 -1.1
1,578,902 - pilW OKGIIK_07135 0.45 -1.2
1,578,902 - pilW OKGIIK_07135 0.45 -2.0
1,578,902 - pilW OKGIIK_07135 0.45 -0.8
1,578,902 - pilW OKGIIK_07135 0.45 -0.4
1,578,932 - pilW OKGIIK_07135 0.49 -0.8
1,578,932 - pilW OKGIIK_07135 0.49 -0.6
1,579,018 - pilW OKGIIK_07135 0.60 -0.6
1,579,070 - pilW OKGIIK_07135 0.66 -0.8
1,579,070 - pilW OKGIIK_07135 0.66 -0.4
1,579,070 - pilW OKGIIK_07135 0.66 -2.2
1,579,070 - pilW OKGIIK_07135 0.66 +0.2
1,579,070 - pilW OKGIIK_07135 0.66 +0.3
1,579,070 - pilW OKGIIK_07135 0.66 -1.6
1,579,103 - pilW OKGIIK_07135 0.71 -1.2
1,579,103 - pilW OKGIIK_07135 0.71 +2.0
1,579,103 - pilW OKGIIK_07135 0.71 -1.6
1,579,103 - pilW OKGIIK_07135 0.71 +0.7
1,579,103 - pilW OKGIIK_07135 0.71 +0.4
1,579,168 - pilW OKGIIK_07135 0.79 +1.1
1,579,168 - pilW OKGIIK_07135 0.79 -1.6
1,579,168 - pilW OKGIIK_07135 0.79 -2.2
1,579,168 - pilW OKGIIK_07135 0.79 +0.1
1,579,172 - pilW OKGIIK_07135 0.79 +0.4

Or see this region's nucleotide sequence