Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt obgE and OKGIIK_04005 are separated by 190 nucleotides OKGIIK_04005 and fTR1 are separated by 4 nucleotides fTR1 and OKGIIK_04015 are separated by 1 nucleotides
OKGIIK_04000: obgE - GTPase ObgE, at 875,351 to 876,430
obgE
OKGIIK_04005: OKGIIK_04005 - Cupredoxin-1 domain-containing protein, at 876,621 to 876,944
_04005
OKGIIK_04010: fTR1 - High-affinity Fe2+/Pb2+ permease, at 876,949 to 877,749
fTR1
OKGIIK_04015: OKGIIK_04015 - Methylcrotonoyl-CoA carboxylase, at 877,751 to 879,358
_04015
Position (kb) 876
877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 876.429 kb on - strand at 876.429 kb on - strand at 876.429 kb on - strand at 876.429 kb on - strand at 876.575 kb on + strand at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.690 kb on + strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.691 kb on - strand, within OKGIIK_04005 at 876.717 kb on + strand, within OKGIIK_04005 at 876.717 kb on + strand, within OKGIIK_04005 at 876.718 kb on - strand, within OKGIIK_04005 at 876.885 kb on + strand, within OKGIIK_04005 at 876.894 kb on + strand, within OKGIIK_04005 at 876.894 kb on + strand, within OKGIIK_04005 at 876.894 kb on + strand, within OKGIIK_04005 at 876.894 kb on + strand, within OKGIIK_04005 at 876.894 kb on + strand, within OKGIIK_04005 at 876.894 kb on + strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.895 kb on - strand, within OKGIIK_04005 at 876.942 kb on + strand at 876.942 kb on + strand at 876.942 kb on + strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.943 kb on - strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.948 kb on + strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 876.949 kb on - strand at 877.148 kb on + strand, within fTR1 at 877.354 kb on + strand, within fTR1 at 877.355 kb on - strand, within fTR1 at 877.355 kb on - strand, within fTR1 at 877.355 kb on - strand, within fTR1 at 877.441 kb on + strand, within fTR1 at 877.441 kb on + strand, within fTR1 at 877.441 kb on + strand, within fTR1 at 877.441 kb on + strand, within fTR1 at 877.442 kb on - strand, within fTR1 at 877.540 kb on + strand, within fTR1 at 877.541 kb on - strand, within fTR1 at 877.651 kb on + strand, within fTR1 at 877.652 kb on - strand, within fTR1 at 877.687 kb on + strand at 877.687 kb on + strand at 877.687 kb on + strand at 877.687 kb on + strand at 877.687 kb on + strand at 877.687 kb on + strand at 877.687 kb on + strand at 877.687 kb on + strand at 877.687 kb on + strand at 877.687 kb on + strand at 877.688 kb on - strand at 877.688 kb on - strand at 877.688 kb on - strand at 877.688 kb on - strand at 877.688 kb on - strand at 877.688 kb on - strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.752 kb on + strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.753 kb on - strand at 877.771 kb on - strand at 877.881 kb on + strand at 877.881 kb on + strand at 877.881 kb on + strand at 877.881 kb on + strand at 877.881 kb on + strand at 877.881 kb on + strand at 877.881 kb on + strand at 877.882 kb on - strand at 877.882 kb on - strand at 877.882 kb on - strand at 877.882 kb on - strand at 877.882 kb on - strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.884 kb on + strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.885 kb on - strand at 877.887 kb on - strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.905 kb on + strand at 877.906 kb on - strand at 877.906 kb on - strand at 877.906 kb on - strand at 877.906 kb on - strand at 877.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 876,429 - -1.4 876,429 - +0.7 876,429 - -0.2 876,429 - +0.1 876,575 + -0.2 876,690 + OKGIIK_04005 0.21 +0.1 876,690 + OKGIIK_04005 0.21 +0.5 876,690 + OKGIIK_04005 0.21 +0.3 876,690 + OKGIIK_04005 0.21 -1.0 876,690 + OKGIIK_04005 0.21 -0.3 876,690 + OKGIIK_04005 0.21 -1.2 876,690 + OKGIIK_04005 0.21 +0.6 876,690 + OKGIIK_04005 0.21 -1.4 876,690 + OKGIIK_04005 0.21 -2.7 876,690 + OKGIIK_04005 0.21 -1.2 876,690 + OKGIIK_04005 0.21 +0.1 876,690 + OKGIIK_04005 0.21 -0.9 876,690 + OKGIIK_04005 0.21 -0.9 876,690 + OKGIIK_04005 0.21 +0.1 876,690 + OKGIIK_04005 0.21 +0.7 876,691 - OKGIIK_04005 0.22 -0.1 876,691 - OKGIIK_04005 0.22 -0.3 876,691 - OKGIIK_04005 0.22 +1.7 876,691 - OKGIIK_04005 0.22 -0.2 876,691 - OKGIIK_04005 0.22 +0.3 876,691 - OKGIIK_04005 0.22 +0.5 876,691 - OKGIIK_04005 0.22 +0.6 876,691 - OKGIIK_04005 0.22 -1.1 876,691 - OKGIIK_04005 0.22 +0.1 876,691 - OKGIIK_04005 0.22 +0.4 876,691 - OKGIIK_04005 0.22 -0.4 876,717 + OKGIIK_04005 0.30 -0.5 876,717 + OKGIIK_04005 0.30 -2.6 876,718 - OKGIIK_04005 0.30 -1.4 876,885 + OKGIIK_04005 0.81 +0.6 876,894 + OKGIIK_04005 0.84 -0.5 876,894 + OKGIIK_04005 0.84 +0.8 876,894 + OKGIIK_04005 0.84 -0.9 876,894 + OKGIIK_04005 0.84 +0.2 876,894 + OKGIIK_04005 0.84 -2.0 876,894 + OKGIIK_04005 0.84 -0.4 876,895 - OKGIIK_04005 0.85 +0.6 876,895 - OKGIIK_04005 0.85 +0.2 876,895 - OKGIIK_04005 0.85 +0.8 876,895 - OKGIIK_04005 0.85 -1.7 876,895 - OKGIIK_04005 0.85 +0.3 876,895 - OKGIIK_04005 0.85 +0.1 876,895 - OKGIIK_04005 0.85 -0.6 876,895 - OKGIIK_04005 0.85 -1.1 876,895 - OKGIIK_04005 0.85 -0.6 876,895 - OKGIIK_04005 0.85 +0.2 876,895 - OKGIIK_04005 0.85 +0.1 876,942 + +1.3 876,942 + -2.4 876,942 + -1.0 876,943 - -0.9 876,943 - +0.5 876,943 - +0.2 876,943 - -0.3 876,943 - -1.2 876,943 - -0.9 876,943 - -0.3 876,943 - -1.2 876,943 - -0.1 876,943 - -0.9 876,948 + +0.3 876,948 + +0.6 876,948 + +1.6 876,948 + -1.9 876,948 + +0.3 876,948 + +1.0 876,948 + -0.4 876,948 + +0.1 876,948 + -1.6 876,948 + +1.0 876,948 + +0.1 876,948 + +0.1 876,948 + -0.1 876,948 + +0.1 876,948 + -0.3 876,948 + -2.3 876,948 + +0.6 876,948 + +1.0 876,948 + +0.6 876,948 + -0.8 876,948 + -1.9 876,948 + -0.9 876,948 + -0.3 876,948 + -0.0 876,948 + +0.3 876,948 + +1.5 876,948 + +0.6 876,948 + -1.7 876,948 + +0.1 876,948 + +0.9 876,948 + +0.1 876,948 + -1.4 876,948 + +1.7 876,948 + +0.9 876,948 + +0.1 876,948 + -0.7 876,948 + +2.0 876,949 - +0.3 876,949 - -1.9 876,949 - -0.4 876,949 - -1.4 876,949 - +0.9 876,949 - +0.1 876,949 - +1.1 876,949 - -0.9 876,949 - -1.2 876,949 - -0.4 876,949 - +1.6 876,949 - +0.4 876,949 - -0.9 876,949 - -1.4 876,949 - +1.1 876,949 - -1.3 876,949 - -0.3 876,949 - +1.4 876,949 - +1.1 876,949 - -2.7 876,949 - -1.9 876,949 - +1.3 876,949 - -1.7 876,949 - -0.6 876,949 - -0.0 876,949 - -1.4 876,949 - -0.0 876,949 - +1.0 876,949 - -2.9 876,949 - +0.1 876,949 - +0.1 876,949 - -0.2 876,949 - +0.6 876,949 - +0.1 876,949 - +1.3 876,949 - -1.2 876,949 - -2.4 876,949 - -0.8 876,949 - -0.9 876,949 - -1.3 876,949 - -0.7 876,949 - +0.3 876,949 - -0.7 876,949 - -0.9 876,949 - +0.6 876,949 - +0.4 876,949 - +0.1 877,148 + fTR1 OKGIIK_04010 0.25 +0.1 877,354 + fTR1 OKGIIK_04010 0.51 +0.3 877,355 - fTR1 OKGIIK_04010 0.51 +0.5 877,355 - fTR1 OKGIIK_04010 0.51 -0.2 877,355 - fTR1 OKGIIK_04010 0.51 +0.5 877,441 + fTR1 OKGIIK_04010 0.61 -1.6 877,441 + fTR1 OKGIIK_04010 0.61 -1.7 877,441 + fTR1 OKGIIK_04010 0.61 -1.9 877,441 + fTR1 OKGIIK_04010 0.61 +1.1 877,442 - fTR1 OKGIIK_04010 0.62 -2.3 877,540 + fTR1 OKGIIK_04010 0.74 -1.3 877,541 - fTR1 OKGIIK_04010 0.74 +0.0 877,651 + fTR1 OKGIIK_04010 0.88 +0.0 877,652 - fTR1 OKGIIK_04010 0.88 +1.1 877,687 + +0.9 877,687 + -1.7 877,687 + +1.6 877,687 + -0.4 877,687 + +0.1 877,687 + -1.4 877,687 + +1.1 877,687 + +0.1 877,687 + +1.1 877,687 + -1.7 877,688 - +1.3 877,688 - -0.9 877,688 - +1.4 877,688 - -0.0 877,688 - -0.4 877,688 - -1.2 877,752 + +1.7 877,752 + -0.2 877,752 + -0.3 877,752 + -0.2 877,752 + +0.3 877,752 + +0.8 877,752 + +0.7 877,752 + -0.4 877,752 + +0.5 877,752 + -0.0 877,752 + -0.4 877,752 + -0.7 877,752 + +0.4 877,752 + -0.1 877,752 + -0.9 877,752 + +0.7 877,752 + +0.1 877,752 + +0.5 877,752 + -1.2 877,752 + -0.4 877,753 - -1.3 877,753 - +0.5 877,753 - +0.8 877,753 - -0.2 877,753 - -0.3 877,753 - -0.9 877,753 - -0.9 877,753 - -0.2 877,753 - -0.5 877,753 - -0.2 877,753 - -1.4 877,753 - -0.4 877,753 - -0.3 877,753 - +0.3 877,753 - +1.4 877,753 - +0.2 877,753 - -1.4 877,753 - -0.7 877,753 - -0.6 877,771 - -0.6 877,881 + +0.1 877,881 + +1.4 877,881 + -0.9 877,881 + -2.6 877,881 + -0.2 877,881 + +0.0 877,881 + -0.7 877,882 - -2.2 877,882 - -0.6 877,882 - +0.3 877,882 - -2.0 877,882 - -0.9 877,884 + +0.3 877,884 + -0.3 877,884 + +0.5 877,884 + +0.4 877,884 + -0.9 877,884 + +0.1 877,884 + -0.1 877,884 + -1.4 877,884 + +1.1 877,884 + +0.3 877,884 + +1.0 877,884 + -0.0 877,885 - -0.2 877,885 - -1.2 877,885 - +0.9 877,885 - -0.3 877,885 - -0.4 877,885 - +0.5 877,885 - -0.4 877,885 - +0.7 877,885 - +0.1 877,885 - -0.3 877,885 - -0.7 877,885 - +1.7 877,885 - +0.6 877,885 - -0.4 877,885 - +0.4 877,885 - -2.0 877,885 - -0.9 877,885 - -0.9 877,887 - +1.1 877,905 + -2.9 877,905 + -0.9 877,905 + -1.1 877,905 + +0.0 877,905 + -0.9 877,905 + -0.1 877,905 + -0.6 877,905 + +0.3 877,905 + -2.2 877,905 + -0.4 877,906 - -0.9 877,906 - -1.7 877,906 - +0.8 877,906 - +0.9 877,906 - -1.4
Or see this region's nucleotide sequence