Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03905
Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A_PIPES with Cobalt chloride 512 uM |
---|---|---|---|---|---|
remove | |||||
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.2 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.1 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.9 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.7 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.9 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | +1.1 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -2.0 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | +0.5 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -1.7 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -1.8 |
855,782 | + | queG | OKGIIK_03900 | 0.27 | -0.1 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +1.1 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | -1.2 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | -0.2 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | -1.0 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | -0.9 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +0.7 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | -1.9 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +0.6 |
855,783 | - | queG | OKGIIK_03900 | 0.27 | +0.1 |
855,873 | + | queG | OKGIIK_03900 | 0.36 | -1.6 |
855,873 | + | queG | OKGIIK_03900 | 0.36 | +0.1 |
855,873 | + | queG | OKGIIK_03900 | 0.36 | -1.9 |
855,873 | + | queG | OKGIIK_03900 | 0.36 | +0.1 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | -0.1 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +0.2 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +1.1 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | -0.2 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | -1.5 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | -0.2 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | -0.2 |
855,874 | - | queG | OKGIIK_03900 | 0.36 | +1.8 |
855,911 | + | queG | OKGIIK_03900 | 0.39 | +1.3 |
855,911 | + | queG | OKGIIK_03900 | 0.39 | +1.8 |
855,912 | - | queG | OKGIIK_03900 | 0.39 | +0.8 |
855,912 | - | queG | OKGIIK_03900 | 0.39 | -0.6 |
856,005 | + | queG | OKGIIK_03900 | 0.48 | -1.0 |
856,005 | + | queG | OKGIIK_03900 | 0.48 | +0.1 |
856,005 | + | queG | OKGIIK_03900 | 0.48 | +1.0 |
856,005 | + | queG | OKGIIK_03900 | 0.48 | -0.9 |
856,005 | + | queG | OKGIIK_03900 | 0.48 | -0.3 |
856,005 | + | queG | OKGIIK_03900 | 0.48 | -1.9 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | +0.8 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.7 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.2 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -1.4 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | +0.7 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.9 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | +0.6 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.4 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.1 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -1.7 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | +1.1 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.9 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.4 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | +1.0 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.7 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | +0.5 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -1.0 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -2.3 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | +0.1 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.9 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | +0.1 |
856,006 | - | queG | OKGIIK_03900 | 0.48 | -0.1 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | -2.4 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | +0.6 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | -2.0 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | +1.1 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | -0.6 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | -0.6 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | -0.1 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | -0.4 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | +0.5 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | -1.3 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | +1.0 |
856,026 | + | queG | OKGIIK_03900 | 0.50 | +0.3 |
856,027 | - | queG | OKGIIK_03900 | 0.50 | -2.2 |
856,027 | - | queG | OKGIIK_03900 | 0.50 | +0.0 |
856,027 | - | queG | OKGIIK_03900 | 0.50 | +0.7 |
856,027 | - | queG | OKGIIK_03900 | 0.50 | +0.8 |
856,027 | - | queG | OKGIIK_03900 | 0.50 | -0.4 |
856,128 | + | queG | OKGIIK_03900 | 0.59 | -0.1 |
856,128 | + | queG | OKGIIK_03900 | 0.59 | -2.2 |
856,128 | + | queG | OKGIIK_03900 | 0.59 | +1.4 |
856,128 | + | queG | OKGIIK_03900 | 0.59 | +1.1 |
856,128 | + | queG | OKGIIK_03900 | 0.59 | +0.4 |
856,128 | + | queG | OKGIIK_03900 | 0.59 | -0.9 |
856,129 | - | queG | OKGIIK_03900 | 0.59 | -0.9 |
856,129 | - | queG | OKGIIK_03900 | 0.59 | -1.0 |
856,129 | - | queG | OKGIIK_03900 | 0.59 | +0.6 |
856,129 | - | queG | OKGIIK_03900 | 0.59 | -0.2 |
856,129 | - | queG | OKGIIK_03900 | 0.59 | -0.7 |
856,129 | - | queG | OKGIIK_03900 | 0.59 | -0.3 |
856,129 | - | queG | OKGIIK_03900 | 0.59 | -0.2 |
856,209 | + | queG | OKGIIK_03900 | 0.66 | +0.1 |
856,209 | + | queG | OKGIIK_03900 | 0.66 | +0.4 |
856,210 | - | queG | OKGIIK_03900 | 0.66 | -1.0 |
856,239 | + | queG | OKGIIK_03900 | 0.69 | -0.3 |
856,240 | - | queG | OKGIIK_03900 | 0.69 | -0.1 |
856,262 | + | queG | OKGIIK_03900 | 0.71 | -1.6 |
856,262 | + | queG | OKGIIK_03900 | 0.71 | -0.3 |
856,262 | + | queG | OKGIIK_03900 | 0.71 | +0.0 |
856,263 | - | queG | OKGIIK_03900 | 0.71 | +0.4 |
856,263 | - | queG | OKGIIK_03900 | 0.71 | -1.1 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +1.0 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.1 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -0.7 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.8 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -1.0 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -0.9 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.6 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -0.6 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -1.2 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -1.4 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +1.4 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -1.4 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -2.3 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.2 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -0.5 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.2 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.7 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -0.4 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -0.1 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.2 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.9 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | -1.9 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.1 |
856,296 | + | queG | OKGIIK_03900 | 0.74 | +0.1 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -0.8 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | +1.3 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -0.9 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | +0.0 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | +0.7 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -0.9 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | +0.0 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -1.4 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | +0.6 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | +0.9 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -0.6 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -0.3 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -0.4 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -0.9 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -1.3 |
856,297 | - | queG | OKGIIK_03900 | 0.74 | -1.0 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +1.0 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.1 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.4 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.2 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.7 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.2 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +1.9 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.1 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.4 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.0 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -2.2 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.8 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.1 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.9 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +1.2 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.8 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.1 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.6 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.3 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.2 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.3 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.1 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.5 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.4 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -1.3 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.4 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +1.0 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.3 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.1 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.7 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -1.5 |
856,380 | + | queG | OKGIIK_03900 | 0.82 | -0.5 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.4 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -1.4 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.2 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +1.7 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.3 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.2 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.6 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.3 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.9 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.0 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.8 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.9 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.1 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.6 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.3 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.4 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -1.7 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.2 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.7 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.2 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.8 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -1.6 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.2 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +1.0 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.4 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.6 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.3 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -0.2 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +1.1 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.2 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -1.2 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | +0.1 |
856,381 | - | queG | OKGIIK_03900 | 0.82 | -1.4 |
856,521 | + | -1.0 | |||
856,522 | - | -0.9 | |||
856,522 | - | -1.2 | |||
856,558 | + | +0.1 | |||
856,558 | + | -1.2 | |||
856,558 | + | +0.1 | |||
856,558 | + | +0.0 | |||
856,558 | + | -1.6 | |||
856,558 | + | -0.6 | |||
856,558 | + | -1.0 | |||
856,558 | + | +2.1 | |||
856,558 | + | +0.3 | |||
856,558 | + | -0.3 | |||
856,558 | + | -0.1 | |||
856,558 | + | -0.7 | |||
856,559 | - | +1.3 | |||
856,559 | - | -0.7 | |||
856,559 | - | -1.2 | |||
856,559 | - | -1.7 | |||
856,559 | - | -1.2 | |||
856,559 | - | +0.7 | |||
856,559 | - | -0.6 | |||
856,559 | - | -0.4 | |||
856,559 | - | -0.9 | |||
856,563 | + | +0.4 | |||
856,563 | + | -0.3 | |||
856,563 | + | -1.7 | |||
856,563 | + | -1.4 | |||
856,563 | + | +0.9 | |||
856,564 | - | +0.7 | |||
856,564 | - | +1.7 | |||
856,564 | - | -0.2 | |||
856,564 | - | -1.2 | |||
856,564 | - | -1.7 | |||
856,564 | - | +1.0 | |||
856,564 | - | -0.1 | |||
856,564 | - | +0.5 | |||
856,580 | + | -0.9 | |||
856,580 | + | -0.7 | |||
856,580 | + | +0.1 | |||
856,580 | + | +0.0 | |||
856,580 | + | +0.3 | |||
856,580 | + | -0.7 | |||
856,580 | + | -0.3 | |||
856,580 | + | +0.9 | |||
856,580 | + | +0.6 | |||
856,581 | - | +0.5 | |||
856,581 | - | -0.7 | |||
856,581 | - | -0.3 | |||
856,581 | - | -0.6 | |||
856,581 | - | -1.0 | |||
856,581 | - | -0.1 | |||
856,581 | - | +1.3 | |||
856,581 | - | -0.8 | |||
856,581 | - | -1.9 | |||
856,581 | - | +0.3 | |||
856,581 | - | -0.2 | |||
856,581 | - | -1.0 | |||
856,581 | - | +0.1 | |||
856,581 | - | -0.6 | |||
856,581 | - | +2.0 | |||
856,581 | - | +0.7 | |||
856,581 | - | -0.7 | |||
856,581 | - | -0.3 | |||
856,581 | - | +0.4 | |||
856,581 | - | +0.2 | |||
856,581 | - | -1.2 | |||
856,582 | + | -0.4 | |||
856,607 | + | -0.1 | |||
856,607 | + | +0.7 | |||
856,624 | + | -0.3 | |||
856,920 | + | OKGIIK_03905 | 0.19 | +0.3 | |
856,977 | + | OKGIIK_03905 | 0.23 | +0.1 | |
856,977 | + | OKGIIK_03905 | 0.23 | +1.7 | |
856,978 | - | OKGIIK_03905 | 0.23 | -1.9 | |
856,979 | + | OKGIIK_03905 | 0.23 | -1.0 | |
856,979 | + | OKGIIK_03905 | 0.23 | +1.0 | |
857,168 | + | OKGIIK_03905 | 0.36 | -0.3 | |
857,168 | + | OKGIIK_03905 | 0.36 | -0.8 | |
857,237 | + | OKGIIK_03905 | 0.41 | +0.1 | |
857,237 | + | OKGIIK_03905 | 0.41 | -0.7 | |
857,237 | + | OKGIIK_03905 | 0.41 | +0.7 | |
857,318 | + | OKGIIK_03905 | 0.46 | +0.4 | |
857,318 | + | OKGIIK_03905 | 0.46 | -0.2 | |
857,318 | + | OKGIIK_03905 | 0.46 | -0.1 | |
858,548 | + | +1.4 | |||
858,549 | - | +0.1 | |||
858,549 | - | -0.8 | |||
858,549 | - | -0.2 | |||
858,549 | - | -0.2 | |||
858,549 | - | +0.3 | |||
858,549 | - | -2.1 | |||
858,549 | - | -0.2 | |||
858,549 | - | -0.2 | |||
858,627 | + | -0.4 | |||
858,627 | + | -1.7 | |||
858,627 | + | +0.2 | |||
858,628 | - | -0.2 | |||
858,636 | - | +1.8 | |||
858,649 | + | -1.2 | |||
858,649 | + | +1.1 | |||
858,649 | + | -1.4 | |||
858,650 | - | -1.0 | |||
858,650 | - | -0.4 | |||
858,650 | - | +1.4 | |||
858,650 | - | +0.3 |
Or see this region's nucleotide sequence