Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02285

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlptA and lptC overlap by 38 nucleotideslptC and OKGIIK_02285 overlap by 4 nucleotidesOKGIIK_02285 and gutQ are separated by 66 nucleotides OKGIIK_02275: lptA - lipopolysaccharide transport periplasmic protein LptA, at 532,414 to 532,998 lptA OKGIIK_02280: lptC - LPS export ABC transporter periplasmic protein LptC, at 532,961 to 533,557 lptC OKGIIK_02285: OKGIIK_02285 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC, at 533,554 to 534,102 _02285 OKGIIK_02290: gutQ - D-arabinose 5-phosphate isomerase, at 534,169 to 535,188 gutQ Position (kb) 533 534 535Strain fitness (log2 ratio) -2 -1 0 1at 534.114 kb on + strandat 534.114 kb on + strandat 534.114 kb on + strandat 534.114 kb on + strandat 534.114 kb on + strandat 534.115 kb on - strandat 534.115 kb on - strandat 534.115 kb on - strandat 534.115 kb on - strandat 534.115 kb on - strandat 534.115 kb on - strandat 534.115 kb on - strandat 534.115 kb on - strandat 534.115 kb on - strandat 534.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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534,114 + -0.5
534,114 + -1.4
534,114 + +0.8
534,114 + -0.8
534,114 + -0.4
534,115 - -0.1
534,115 - +1.1
534,115 - -2.1
534,115 - +0.2
534,115 - +0.6
534,115 - +0.4
534,115 - -0.4
534,115 - -0.1
534,115 - -0.2
534,115 - -0.2

Or see this region's nucleotide sequence