Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgmB and purR are separated by 286 nucleotides purR and OKGIIK_01755 are separated by 7 nucleotides
OKGIIK_01745: pgmB - beta-phosphoglucomutase, at 401,399 to 404,446
pgmB
OKGIIK_01750: purR - LacI family transcriptional regulator, at 404,733 to 405,737
purR
OKGIIK_01755: OKGIIK_01755 - Histidine kinase, at 405,745 to 407,394
_01755
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 403.899 kb on + strand, within pgmB at 403.900 kb on - strand, within pgmB at 404.150 kb on - strand at 404.150 kb on - strand at 404.181 kb on + strand at 404.182 kb on - strand at 404.182 kb on - strand at 404.205 kb on - strand at 404.205 kb on - strand at 404.205 kb on - strand at 404.422 kb on + strand at 404.422 kb on + strand at 404.422 kb on + strand at 404.422 kb on + strand at 404.422 kb on + strand at 404.423 kb on - strand at 404.423 kb on - strand at 404.423 kb on - strand at 404.423 kb on - strand at 404.423 kb on - strand at 404.423 kb on - strand at 404.423 kb on - strand at 404.423 kb on - strand at 404.423 kb on - strand at 404.491 kb on + strand at 404.492 kb on - strand at 404.505 kb on + strand at 404.512 kb on - strand at 404.730 kb on + strand at 404.730 kb on + strand at 404.730 kb on + strand at 404.730 kb on + strand at 404.731 kb on - strand at 404.731 kb on - strand at 404.901 kb on + strand, within purR at 404.901 kb on + strand, within purR at 404.901 kb on + strand, within purR at 404.901 kb on + strand, within purR at 404.902 kb on - strand, within purR at 404.949 kb on - strand, within purR at 404.949 kb on - strand, within purR at 404.949 kb on - strand, within purR at 405.057 kb on + strand, within purR at 405.057 kb on + strand, within purR at 405.058 kb on - strand, within purR at 405.058 kb on - strand, within purR at 405.193 kb on + strand, within purR at 405.193 kb on + strand, within purR at 405.194 kb on - strand, within purR at 405.570 kb on + strand, within purR at 405.571 kb on - strand, within purR at 405.571 kb on - strand, within purR at 405.571 kb on - strand, within purR at 405.664 kb on + strand at 405.664 kb on + strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.849 kb on - strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.894 kb on - strand at 405.914 kb on + strand, within OKGIIK_01755 at 405.915 kb on - strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 406.199 kb on + strand, within OKGIIK_01755 at 406.199 kb on + strand, within OKGIIK_01755 at 406.199 kb on + strand, within OKGIIK_01755 at 406.199 kb on + strand, within OKGIIK_01755 at 406.200 kb on - strand, within OKGIIK_01755 at 406.200 kb on - strand, within OKGIIK_01755 at 406.200 kb on - strand, within OKGIIK_01755 at 406.389 kb on - strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 403,899 + pgmB OKGIIK_01745 0.82 -0.9 403,900 - pgmB OKGIIK_01745 0.82 +0.5 404,150 - +0.1 404,150 - -1.2 404,181 + +0.7 404,182 - +0.3 404,182 - -0.2 404,205 - -2.7 404,205 - -1.4 404,205 - -1.8 404,422 + +0.0 404,422 + +0.7 404,422 + +1.1 404,422 + -1.9 404,422 + -0.6 404,423 - +0.1 404,423 - -2.3 404,423 - -1.7 404,423 - -0.4 404,423 - +0.3 404,423 - +0.3 404,423 - -0.1 404,423 - +0.6 404,423 - +0.6 404,491 + +1.8 404,492 - +0.3 404,505 + +0.3 404,512 - +0.4 404,730 + +2.1 404,730 + -0.9 404,730 + -0.8 404,730 + -1.4 404,731 - -0.5 404,731 - -0.7 404,901 + purR OKGIIK_01750 0.17 +0.7 404,901 + purR OKGIIK_01750 0.17 +0.9 404,901 + purR OKGIIK_01750 0.17 -1.6 404,901 + purR OKGIIK_01750 0.17 -1.4 404,902 - purR OKGIIK_01750 0.17 +0.2 404,949 - purR OKGIIK_01750 0.21 +0.8 404,949 - purR OKGIIK_01750 0.21 +1.1 404,949 - purR OKGIIK_01750 0.21 -0.2 405,057 + purR OKGIIK_01750 0.32 -0.4 405,057 + purR OKGIIK_01750 0.32 +0.6 405,058 - purR OKGIIK_01750 0.32 -0.1 405,058 - purR OKGIIK_01750 0.32 -1.1 405,193 + purR OKGIIK_01750 0.46 -0.4 405,193 + purR OKGIIK_01750 0.46 +0.5 405,194 - purR OKGIIK_01750 0.46 -0.7 405,570 + purR OKGIIK_01750 0.83 -0.2 405,571 - purR OKGIIK_01750 0.83 -1.2 405,571 - purR OKGIIK_01750 0.83 +1.3 405,571 - purR OKGIIK_01750 0.83 +0.6 405,664 + +0.4 405,664 + -1.3 405,665 - +1.6 405,665 - +1.7 405,665 - -0.3 405,665 - -0.0 405,665 - -1.4 405,665 - -1.2 405,665 - +0.5 405,848 + -1.7 405,848 + -2.2 405,848 + +0.1 405,848 + +0.0 405,848 + -0.9 405,848 + +1.0 405,848 + -0.4 405,848 + +0.6 405,848 + +0.3 405,849 - -0.1 405,893 + +0.8 405,893 + +0.4 405,893 + +0.4 405,893 + -0.9 405,893 + -0.1 405,893 + +0.1 405,893 + -1.0 405,894 - +0.3 405,914 + OKGIIK_01755 0.10 +0.3 405,915 - OKGIIK_01755 0.10 -1.9 405,927 + OKGIIK_01755 0.11 -1.0 405,927 + OKGIIK_01755 0.11 -3.3 405,927 + OKGIIK_01755 0.11 -1.0 405,927 + OKGIIK_01755 0.11 -0.9 405,927 + OKGIIK_01755 0.11 -0.0 405,927 + OKGIIK_01755 0.11 -1.2 405,927 + OKGIIK_01755 0.11 -1.3 405,927 + OKGIIK_01755 0.11 +1.3 405,927 + OKGIIK_01755 0.11 -0.0 405,927 + OKGIIK_01755 0.11 -1.2 405,928 - OKGIIK_01755 0.11 -1.2 405,928 - OKGIIK_01755 0.11 +0.9 405,928 - OKGIIK_01755 0.11 -0.6 405,928 - OKGIIK_01755 0.11 +1.5 405,928 - OKGIIK_01755 0.11 +0.4 405,928 - OKGIIK_01755 0.11 +0.3 405,929 + OKGIIK_01755 0.11 -0.7 405,929 + OKGIIK_01755 0.11 -0.7 405,929 + OKGIIK_01755 0.11 +0.7 405,929 + OKGIIK_01755 0.11 +0.7 405,929 + OKGIIK_01755 0.11 -1.4 405,929 + OKGIIK_01755 0.11 -0.2 405,929 + OKGIIK_01755 0.11 +1.1 405,929 + OKGIIK_01755 0.11 +0.1 405,929 + OKGIIK_01755 0.11 +1.3 405,929 + OKGIIK_01755 0.11 -1.2 405,929 + OKGIIK_01755 0.11 -0.1 405,929 + OKGIIK_01755 0.11 +0.2 405,929 + OKGIIK_01755 0.11 -0.4 405,929 + OKGIIK_01755 0.11 -0.7 405,929 + OKGIIK_01755 0.11 -0.6 405,929 + OKGIIK_01755 0.11 -0.6 405,930 - OKGIIK_01755 0.11 +0.4 405,930 - OKGIIK_01755 0.11 -0.1 405,930 - OKGIIK_01755 0.11 +0.9 405,930 - OKGIIK_01755 0.11 -0.1 405,930 - OKGIIK_01755 0.11 +0.2 405,930 - OKGIIK_01755 0.11 -1.7 405,930 - OKGIIK_01755 0.11 -0.3 405,930 - OKGIIK_01755 0.11 +1.1 406,199 + OKGIIK_01755 0.28 +1.1 406,199 + OKGIIK_01755 0.28 -0.4 406,199 + OKGIIK_01755 0.28 +0.1 406,199 + OKGIIK_01755 0.28 +0.4 406,200 - OKGIIK_01755 0.28 -1.7 406,200 - OKGIIK_01755 0.28 -0.0 406,200 - OKGIIK_01755 0.28 -1.7 406,389 - OKGIIK_01755 0.39 -0.4 406,625 + OKGIIK_01755 0.53 +2.1 406,625 + OKGIIK_01755 0.53 -1.5 406,625 + OKGIIK_01755 0.53 -0.1 406,625 + OKGIIK_01755 0.53 -1.7 406,625 + OKGIIK_01755 0.53 +0.5 406,626 - OKGIIK_01755 0.53 +1.0 406,626 - OKGIIK_01755 0.53 +1.3 406,626 - OKGIIK_01755 0.53 -0.8 406,626 - OKGIIK_01755 0.53 +1.1 406,626 - OKGIIK_01755 0.53 -2.2 406,626 - OKGIIK_01755 0.53 -0.7 406,626 - OKGIIK_01755 0.53 -0.3 406,626 - OKGIIK_01755 0.53 -0.7 406,626 - OKGIIK_01755 0.53 +0.0
Or see this region's nucleotide sequence