Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01505

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysK and OKGIIK_01505 are separated by 146 nucleotidesOKGIIK_01505 and mET2 are separated by 348 nucleotides OKGIIK_01500: cysK - cysteine synthase A, at 337,630 to 338,646 cysK OKGIIK_01505: OKGIIK_01505 - peroxiredoxin, at 338,793 to 339,428 _01505 OKGIIK_01510: mET2 - homoserine O-succinyltransferase, at 339,777 to 340,808 mET2 Position (kb) 338 339 340Strain fitness (log2 ratio) -2 -1 0 1at 337.991 kb on + strand, within cysKat 337.992 kb on - strand, within cysKat 337.992 kb on - strand, within cysKat 337.992 kb on - strand, within cysKat 338.285 kb on + strand, within cysKat 338.285 kb on + strand, within cysKat 338.285 kb on + strand, within cysKat 338.285 kb on + strand, within cysKat 338.285 kb on + strand, within cysKat 338.285 kb on + strand, within cysKat 338.285 kb on + strand, within cysKat 338.286 kb on - strand, within cysKat 338.286 kb on - strand, within cysKat 338.824 kb on + strandat 338.824 kb on + strandat 338.824 kb on + strandat 338.854 kb on + strandat 338.855 kb on - strandat 339.013 kb on + strand, within OKGIIK_01505at 339.014 kb on - strand, within OKGIIK_01505at 339.014 kb on - strand, within OKGIIK_01505at 339.107 kb on - strand, within OKGIIK_01505at 339.107 kb on - strand, within OKGIIK_01505at 339.148 kb on + strand, within OKGIIK_01505at 339.149 kb on - strand, within OKGIIK_01505at 339.149 kb on - strand, within OKGIIK_01505at 339.149 kb on - strand, within OKGIIK_01505at 339.168 kb on + strand, within OKGIIK_01505at 339.168 kb on + strand, within OKGIIK_01505at 339.168 kb on + strand, within OKGIIK_01505at 339.352 kb on + strand, within OKGIIK_01505at 339.512 kb on + strandat 339.512 kb on + strandat 339.512 kb on + strandat 339.512 kb on + strandat 339.512 kb on + strandat 339.512 kb on + strandat 339.512 kb on + strandat 339.512 kb on + strandat 339.512 kb on + strandat 339.513 kb on - strandat 339.513 kb on - strandat 339.513 kb on - strandat 339.513 kb on - strandat 339.513 kb on - strandat 339.514 kb on + strandat 339.514 kb on + strandat 339.514 kb on + strandat 339.514 kb on + strandat 339.515 kb on - strandat 339.515 kb on - strandat 339.515 kb on - strandat 339.515 kb on - strandat 339.538 kb on + strandat 339.538 kb on + strandat 339.539 kb on - strandat 339.539 kb on - strandat 339.549 kb on + strandat 339.549 kb on + strandat 339.549 kb on + strandat 339.549 kb on + strandat 339.549 kb on + strandat 339.549 kb on + strandat 339.550 kb on - strandat 339.551 kb on + strandat 339.552 kb on - strandat 339.552 kb on - strandat 339.552 kb on - strandat 339.803 kb on + strandat 339.804 kb on - strandat 339.812 kb on + strandat 339.850 kb on - strandat 339.905 kb on + strand, within mET2at 339.906 kb on - strand, within mET2at 339.906 kb on - strand, within mET2at 339.906 kb on - strand, within mET2at 339.906 kb on - strand, within mET2at 339.906 kb on - strand, within mET2at 339.909 kb on + strand, within mET2at 339.910 kb on - strand, within mET2at 339.910 kb on - strand, within mET2at 339.910 kb on - strand, within mET2at 339.942 kb on + strand, within mET2at 339.942 kb on + strand, within mET2at 339.942 kb on + strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 339.943 kb on - strand, within mET2at 340.234 kb on - strand, within mET2at 340.234 kb on - strand, within mET2

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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337,991 + cysK OKGIIK_01500 0.35 +0.8
337,992 - cysK OKGIIK_01500 0.36 -0.1
337,992 - cysK OKGIIK_01500 0.36 +0.1
337,992 - cysK OKGIIK_01500 0.36 +0.8
338,285 + cysK OKGIIK_01500 0.64 +0.3
338,285 + cysK OKGIIK_01500 0.64 -0.5
338,285 + cysK OKGIIK_01500 0.64 -2.2
338,285 + cysK OKGIIK_01500 0.64 +1.1
338,285 + cysK OKGIIK_01500 0.64 +0.1
338,285 + cysK OKGIIK_01500 0.64 -2.2
338,285 + cysK OKGIIK_01500 0.64 +0.3
338,286 - cysK OKGIIK_01500 0.65 +0.1
338,286 - cysK OKGIIK_01500 0.65 -1.3
338,824 + -1.5
338,824 + -0.1
338,824 + +0.4
338,854 + +1.1
338,855 - -0.6
339,013 + OKGIIK_01505 0.35 +1.3
339,014 - OKGIIK_01505 0.35 +0.5
339,014 - OKGIIK_01505 0.35 -1.7
339,107 - OKGIIK_01505 0.49 +0.3
339,107 - OKGIIK_01505 0.49 +0.1
339,148 + OKGIIK_01505 0.56 -1.2
339,149 - OKGIIK_01505 0.56 -1.2
339,149 - OKGIIK_01505 0.56 -0.4
339,149 - OKGIIK_01505 0.56 -1.9
339,168 + OKGIIK_01505 0.59 -1.7
339,168 + OKGIIK_01505 0.59 -0.5
339,168 + OKGIIK_01505 0.59 +0.1
339,352 + OKGIIK_01505 0.88 +1.1
339,512 + -1.7
339,512 + -0.8
339,512 + -0.0
339,512 + -0.4
339,512 + +0.0
339,512 + -0.2
339,512 + -0.1
339,512 + -0.9
339,512 + +0.4
339,513 - -0.6
339,513 - -1.2
339,513 - +0.5
339,513 - +0.4
339,513 - +0.1
339,514 + -1.8
339,514 + +0.8
339,514 + -1.0
339,514 + +0.5
339,515 - +0.4
339,515 - +0.1
339,515 - +0.4
339,515 - -0.3
339,538 + -0.8
339,538 + -1.2
339,539 - -0.9
339,539 - -2.5
339,549 + +0.1
339,549 + +0.7
339,549 + +0.7
339,549 + -0.1
339,549 + +0.3
339,549 + -1.2
339,550 - -0.4
339,551 + +1.0
339,552 - +0.6
339,552 - -2.6
339,552 - +1.3
339,803 + -1.5
339,804 - -0.3
339,812 + +0.3
339,850 - +0.3
339,905 + mET2 OKGIIK_01510 0.12 +0.2
339,906 - mET2 OKGIIK_01510 0.12 -2.0
339,906 - mET2 OKGIIK_01510 0.12 +0.4
339,906 - mET2 OKGIIK_01510 0.12 -2.3
339,906 - mET2 OKGIIK_01510 0.12 +0.3
339,906 - mET2 OKGIIK_01510 0.12 -0.2
339,909 + mET2 OKGIIK_01510 0.13 +0.7
339,910 - mET2 OKGIIK_01510 0.13 -1.7
339,910 - mET2 OKGIIK_01510 0.13 -0.2
339,910 - mET2 OKGIIK_01510 0.13 -0.2
339,942 + mET2 OKGIIK_01510 0.16 -1.7
339,942 + mET2 OKGIIK_01510 0.16 +0.8
339,942 + mET2 OKGIIK_01510 0.16 -0.5
339,943 - mET2 OKGIIK_01510 0.16 +0.1
339,943 - mET2 OKGIIK_01510 0.16 +1.5
339,943 - mET2 OKGIIK_01510 0.16 +0.3
339,943 - mET2 OKGIIK_01510 0.16 +0.3
339,943 - mET2 OKGIIK_01510 0.16 -0.5
339,943 - mET2 OKGIIK_01510 0.16 -1.2
339,943 - mET2 OKGIIK_01510 0.16 +0.8
339,943 - mET2 OKGIIK_01510 0.16 +0.6
339,943 - mET2 OKGIIK_01510 0.16 +0.3
339,943 - mET2 OKGIIK_01510 0.16 -1.7
340,234 - mET2 OKGIIK_01510 0.44 -1.1
340,234 - mET2 OKGIIK_01510 0.44 -0.0

Or see this region's nucleotide sequence