Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00820

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00810 and OKGIIK_00815 are separated by 33 nucleotidesOKGIIK_00815 and OKGIIK_00820 are separated by 141 nucleotidesOKGIIK_00820 and OKGIIK_00825 are separated by 289 nucleotidesOKGIIK_00825 and OKGIIK_00830 are separated by 72 nucleotides OKGIIK_00810: OKGIIK_00810 - Universal stress protein UspA, at 179,937 to 180,782 _00810 OKGIIK_00815: OKGIIK_00815 - GNAT family acetyltransferase, at 180,816 to 181,388 _00815 OKGIIK_00820: OKGIIK_00820 - CRP-like protein Clp, at 181,530 to 182,294 _00820 OKGIIK_00825: OKGIIK_00825 - Cytochrome B, at 182,584 to 183,147 _00825 OKGIIK_00830: OKGIIK_00830 - Nitric-oxide reductase, at 183,220 to 184,941 _00830 Position (kb) 181 182 183Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 180.883 kb on + strand, within OKGIIK_00815at 180.883 kb on + strand, within OKGIIK_00815at 180.883 kb on + strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 181.066 kb on + strand, within OKGIIK_00815at 181.066 kb on + strand, within OKGIIK_00815at 181.067 kb on - strand, within OKGIIK_00815at 181.067 kb on - strand, within OKGIIK_00815at 181.278 kb on + strand, within OKGIIK_00815at 181.278 kb on + strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.285 kb on - strand, within OKGIIK_00815at 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.635 kb on + strand, within OKGIIK_00820at 181.635 kb on + strand, within OKGIIK_00820at 181.636 kb on - strand, within OKGIIK_00820at 181.636 kb on - strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.712 kb on - strand, within OKGIIK_00820at 181.927 kb on + strand, within OKGIIK_00820at 181.927 kb on + strand, within OKGIIK_00820at 181.927 kb on + strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.128 kb on + strand, within OKGIIK_00820at 182.171 kb on + strand, within OKGIIK_00820at 182.171 kb on + strand, within OKGIIK_00820at 182.366 kb on + strandat 182.366 kb on + strandat 182.366 kb on + strandat 182.366 kb on + strandat 182.366 kb on + strandat 182.367 kb on - strandat 182.367 kb on - strandat 182.611 kb on + strandat 182.611 kb on + strandat 182.612 kb on - strandat 182.668 kb on + strand, within OKGIIK_00825at 182.668 kb on + strand, within OKGIIK_00825at 182.669 kb on - strand, within OKGIIK_00825at 182.669 kb on - strand, within OKGIIK_00825at 182.669 kb on - strand, within OKGIIK_00825at 182.695 kb on + strand, within OKGIIK_00825at 182.695 kb on + strand, within OKGIIK_00825at 182.695 kb on + strand, within OKGIIK_00825at 182.695 kb on + strand, within OKGIIK_00825at 182.696 kb on - strand, within OKGIIK_00825at 182.696 kb on - strand, within OKGIIK_00825at 182.696 kb on - strand, within OKGIIK_00825at 182.696 kb on - strand, within OKGIIK_00825at 182.696 kb on - strand, within OKGIIK_00825at 182.696 kb on - strand, within OKGIIK_00825at 182.696 kb on - strand, within OKGIIK_00825at 182.878 kb on + strand, within OKGIIK_00825at 182.878 kb on + strand, within OKGIIK_00825at 183.040 kb on + strand, within OKGIIK_00825at 183.040 kb on + strand, within OKGIIK_00825at 183.041 kb on - strand, within OKGIIK_00825at 183.041 kb on - strand, within OKGIIK_00825at 183.041 kb on - strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.043 kb on + strand, within OKGIIK_00825at 183.044 kb on - strand, within OKGIIK_00825at 183.044 kb on - strand, within OKGIIK_00825at 183.044 kb on - strand, within OKGIIK_00825at 183.044 kb on - strand, within OKGIIK_00825at 183.044 kb on - strand, within OKGIIK_00825at 183.044 kb on - strand, within OKGIIK_00825at 183.044 kb on - strand, within OKGIIK_00825at 183.044 kb on - strand, within OKGIIK_00825at 183.085 kb on + strand, within OKGIIK_00825at 183.086 kb on - strand, within OKGIIK_00825

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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180,883 + OKGIIK_00815 0.12 +0.6
180,883 + OKGIIK_00815 0.12 +0.5
180,883 + OKGIIK_00815 0.12 -0.5
180,884 - OKGIIK_00815 0.12 -0.1
180,884 - OKGIIK_00815 0.12 -0.2
180,884 - OKGIIK_00815 0.12 +0.2
181,066 + OKGIIK_00815 0.44 +1.4
181,066 + OKGIIK_00815 0.44 +1.3
181,067 - OKGIIK_00815 0.44 -1.7
181,067 - OKGIIK_00815 0.44 +0.7
181,278 + OKGIIK_00815 0.81 -0.7
181,278 + OKGIIK_00815 0.81 -1.7
181,279 - OKGIIK_00815 0.81 -0.4
181,279 - OKGIIK_00815 0.81 +1.9
181,279 - OKGIIK_00815 0.81 +1.3
181,279 - OKGIIK_00815 0.81 +0.1
181,285 - OKGIIK_00815 0.82 +0.4
181,477 + +0.2
181,477 + +1.4
181,477 + +0.4
181,477 + -0.1
181,477 + +1.7
181,477 + -0.7
181,478 - -1.0
181,478 - +1.1
181,478 - -0.1
181,478 - -0.3
181,478 - +0.1
181,635 + OKGIIK_00820 0.14 -0.4
181,635 + OKGIIK_00820 0.14 -2.2
181,636 - OKGIIK_00820 0.14 +0.7
181,636 - OKGIIK_00820 0.14 -0.9
181,696 + OKGIIK_00820 0.22 +1.3
181,696 + OKGIIK_00820 0.22 -1.2
181,696 + OKGIIK_00820 0.22 +0.3
181,696 + OKGIIK_00820 0.22 -0.5
181,697 - OKGIIK_00820 0.22 +0.3
181,697 - OKGIIK_00820 0.22 +1.3
181,697 - OKGIIK_00820 0.22 -0.2
181,697 - OKGIIK_00820 0.22 +0.4
181,712 - OKGIIK_00820 0.24 +0.6
181,927 + OKGIIK_00820 0.52 +0.1
181,927 + OKGIIK_00820 0.52 +1.7
181,927 + OKGIIK_00820 0.52 -0.5
181,928 - OKGIIK_00820 0.52 +1.1
181,928 - OKGIIK_00820 0.52 -0.3
181,928 - OKGIIK_00820 0.52 +0.6
181,928 - OKGIIK_00820 0.52 -1.5
181,928 - OKGIIK_00820 0.52 -0.8
182,098 + OKGIIK_00820 0.74 +0.5
182,098 + OKGIIK_00820 0.74 -1.9
182,098 + OKGIIK_00820 0.74 +1.0
182,098 + OKGIIK_00820 0.74 -0.3
182,098 + OKGIIK_00820 0.74 +1.1
182,098 + OKGIIK_00820 0.74 +1.3
182,098 + OKGIIK_00820 0.74 +0.3
182,098 + OKGIIK_00820 0.74 -1.2
182,098 + OKGIIK_00820 0.74 -1.7
182,099 - OKGIIK_00820 0.74 -2.1
182,099 - OKGIIK_00820 0.74 +0.1
182,099 - OKGIIK_00820 0.74 -0.2
182,099 - OKGIIK_00820 0.74 -0.8
182,099 - OKGIIK_00820 0.74 -0.3
182,099 - OKGIIK_00820 0.74 -1.7
182,099 - OKGIIK_00820 0.74 -1.9
182,128 + OKGIIK_00820 0.78 -0.5
182,171 + OKGIIK_00820 0.84 -0.9
182,171 + OKGIIK_00820 0.84 -1.4
182,366 + -1.1
182,366 + -0.2
182,366 + +0.5
182,366 + +0.2
182,366 + -1.7
182,367 - +0.8
182,367 - +1.0
182,611 + +0.1
182,611 + -0.5
182,612 - -0.5
182,668 + OKGIIK_00825 0.15 -1.7
182,668 + OKGIIK_00825 0.15 -0.3
182,669 - OKGIIK_00825 0.15 -0.1
182,669 - OKGIIK_00825 0.15 -0.0
182,669 - OKGIIK_00825 0.15 -1.5
182,695 + OKGIIK_00825 0.20 +0.2
182,695 + OKGIIK_00825 0.20 -1.7
182,695 + OKGIIK_00825 0.20 -1.5
182,695 + OKGIIK_00825 0.20 -1.4
182,696 - OKGIIK_00825 0.20 -1.5
182,696 - OKGIIK_00825 0.20 -0.8
182,696 - OKGIIK_00825 0.20 -4.3
182,696 - OKGIIK_00825 0.20 +0.3
182,696 - OKGIIK_00825 0.20 -3.3
182,696 - OKGIIK_00825 0.20 -1.1
182,696 - OKGIIK_00825 0.20 -1.7
182,878 + OKGIIK_00825 0.52 -0.8
182,878 + OKGIIK_00825 0.52 -0.1
183,040 + OKGIIK_00825 0.81 +0.2
183,040 + OKGIIK_00825 0.81 +1.9
183,041 - OKGIIK_00825 0.81 -0.9
183,041 - OKGIIK_00825 0.81 +0.3
183,041 - OKGIIK_00825 0.81 -0.6
183,043 + OKGIIK_00825 0.81 +0.6
183,043 + OKGIIK_00825 0.81 -0.5
183,043 + OKGIIK_00825 0.81 +0.9
183,043 + OKGIIK_00825 0.81 -0.9
183,043 + OKGIIK_00825 0.81 +0.1
183,043 + OKGIIK_00825 0.81 +0.1
183,043 + OKGIIK_00825 0.81 -0.5
183,043 + OKGIIK_00825 0.81 -0.2
183,043 + OKGIIK_00825 0.81 -0.3
183,043 + OKGIIK_00825 0.81 -2.1
183,043 + OKGIIK_00825 0.81 -0.3
183,043 + OKGIIK_00825 0.81 -0.3
183,043 + OKGIIK_00825 0.81 +0.2
183,044 - OKGIIK_00825 0.82 -1.2
183,044 - OKGIIK_00825 0.82 -2.2
183,044 - OKGIIK_00825 0.82 -1.1
183,044 - OKGIIK_00825 0.82 -1.1
183,044 - OKGIIK_00825 0.82 +0.1
183,044 - OKGIIK_00825 0.82 -1.2
183,044 - OKGIIK_00825 0.82 -0.3
183,044 - OKGIIK_00825 0.82 +0.7
183,085 + OKGIIK_00825 0.89 +0.3
183,086 - OKGIIK_00825 0.89 -0.2

Or see this region's nucleotide sequence