Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06958

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06956 and MPMX19_06957 overlap by 8 nucleotidesMPMX19_06957 and MPMX19_06958 overlap by 4 nucleotidesMPMX19_06958 and MPMX19_06959 are separated by 164 nucleotides MPMX19_06956: MPMX19_06956 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 232,355 to 233,077 _06956 MPMX19_06957: MPMX19_06957 - Lipopolysaccharide export system ATP-binding protein LptB, at 233,070 to 233,846 _06957 MPMX19_06958: MPMX19_06958 - Citrate synthase 1, at 233,843 to 234,931 _06958 MPMX19_06959: MPMX19_06959 - hypothetical protein, at 235,096 to 236,325 _06959 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 233.016 kb on + strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.895 kb on + strandat 233.895 kb on + strandat 233.895 kb on + strandat 233.895 kb on + strandat 233.896 kb on - strandat 233.896 kb on - strandat 233.896 kb on - strandat 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.468 kb on + strand, within MPMX19_06958at 234.468 kb on + strand, within MPMX19_06958at 234.469 kb on - strand, within MPMX19_06958at 234.469 kb on - strand, within MPMX19_06958at 234.826 kb on - strandat 235.031 kb on + strandat 235.031 kb on + strandat 235.031 kb on + strandat 235.032 kb on - strandat 235.032 kb on - strandat 235.032 kb on - strandat 235.032 kb on - strandat 235.032 kb on - strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.033 kb on + strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.034 kb on - strandat 235.037 kb on + strandat 235.037 kb on + strandat 235.037 kb on + strandat 235.037 kb on + strandat 235.037 kb on + strandat 235.037 kb on + strandat 235.037 kb on + strandat 235.037 kb on + strandat 235.037 kb on + strandat 235.038 kb on - strandat 235.049 kb on + strandat 235.049 kb on + strandat 235.049 kb on + strandat 235.050 kb on - strandat 235.059 kb on + strandat 235.059 kb on + strandat 235.097 kb on + strandat 235.097 kb on + strandat 235.097 kb on + strandat 235.097 kb on + strandat 235.097 kb on + strandat 235.097 kb on + strandat 235.097 kb on + strandat 235.097 kb on + strandat 235.097 kb on + strandat 235.098 kb on - strandat 235.098 kb on - strandat 235.098 kb on - strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.178 kb on + strandat 235.179 kb on - strandat 235.179 kb on - strandat 235.179 kb on - strandat 235.179 kb on - strandat 235.179 kb on - strandat 235.179 kb on - strandat 235.179 kb on - strandat 235.181 kb on + strandat 235.181 kb on + strandat 235.181 kb on + strandat 235.182 kb on - strandat 235.182 kb on - strandat 235.182 kb on - strandat 235.229 kb on + strand, within MPMX19_06959at 235.229 kb on + strand, within MPMX19_06959at 235.229 kb on + strand, within MPMX19_06959at 235.229 kb on + strand, within MPMX19_06959at 235.230 kb on - strand, within MPMX19_06959at 235.382 kb on + strand, within MPMX19_06959at 235.383 kb on - strand, within MPMX19_06959at 235.383 kb on - strand, within MPMX19_06959at 235.397 kb on + strand, within MPMX19_06959at 235.397 kb on + strand, within MPMX19_06959at 235.398 kb on - strand, within MPMX19_06959at 235.472 kb on + strand, within MPMX19_06959at 235.472 kb on + strand, within MPMX19_06959at 235.472 kb on + strand, within MPMX19_06959at 235.473 kb on - strand, within MPMX19_06959at 235.473 kb on - strand, within MPMX19_06959at 235.473 kb on - strand, within MPMX19_06959at 235.473 kb on - strand, within MPMX19_06959at 235.787 kb on + strand, within MPMX19_06959at 235.788 kb on - strand, within MPMX19_06959at 235.788 kb on - strand, within MPMX19_06959at 235.788 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.862 kb on + strand, within MPMX19_06959at 235.862 kb on + strand, within MPMX19_06959at 235.862 kb on + strand, within MPMX19_06959at 235.863 kb on - strand, within MPMX19_06959at 235.863 kb on - strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.872 kb on - strand, within MPMX19_06959at 235.872 kb on - strand, within MPMX19_06959

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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233,016 + -0.8
233,100 - +0.4
233,100 - -0.7
233,100 - +0.1
233,100 - +1.3
233,100 - -1.8
233,100 - -0.5
233,100 - -2.3
233,100 - +1.3
233,100 - +0.3
233,100 - -1.9
233,100 - -0.6
233,100 - +2.9
233,100 - -0.5
233,100 - -0.5
233,102 - +1.3
233,102 - -1.3
233,102 - -0.1
233,102 - -0.9
233,102 - +0.7
233,102 - +0.4
233,102 - -0.1
233,102 - -1.2
233,102 - -0.1
233,102 - -0.5
233,102 - +0.4
233,102 - -1.9
233,102 - -1.3
233,102 - +0.3
233,102 - -0.8
233,102 - -1.3
233,102 - -1.1
233,102 - +0.9
233,102 - -0.2
233,102 - -1.4
233,102 - -0.2
233,102 - -1.2
233,102 - +1.0
233,102 - +0.2
233,102 - -0.4
233,102 - -1.5
233,102 - -0.6
233,102 - -0.3
233,102 - +0.0
233,102 - -1.6
233,102 - -0.2
233,102 - +0.3
233,102 - +1.3
233,102 - -0.6
233,102 - +0.9
233,102 - -0.9
233,102 - +0.1
233,102 - +1.0
233,102 - -0.6
233,895 + +1.6
233,895 + -1.1
233,895 + -0.9
233,895 + -0.2
233,896 - -0.6
233,896 - +0.0
233,896 - +0.7
234,216 + MPMX19_06958 0.34 +0.1
234,216 + MPMX19_06958 0.34 -0.3
234,216 + MPMX19_06958 0.34 +0.5
234,216 + MPMX19_06958 0.34 -0.9
234,216 + MPMX19_06958 0.34 -0.3
234,216 + MPMX19_06958 0.34 +0.1
234,217 - MPMX19_06958 0.34 -0.6
234,217 - MPMX19_06958 0.34 +1.5
234,217 - MPMX19_06958 0.34 +0.0
234,217 - MPMX19_06958 0.34 +1.2
234,217 - MPMX19_06958 0.34 -1.1
234,217 - MPMX19_06958 0.34 -0.3
234,217 - MPMX19_06958 0.34 +0.8
234,217 - MPMX19_06958 0.34 +1.1
234,468 + MPMX19_06958 0.57 -0.3
234,468 + MPMX19_06958 0.57 -0.1
234,469 - MPMX19_06958 0.57 -0.0
234,469 - MPMX19_06958 0.57 +0.2
234,826 - +0.9
235,031 + +0.5
235,031 + -1.7
235,031 + -1.5
235,032 - -0.1
235,032 - -1.9
235,032 - -0.3
235,032 - -1.1
235,032 - +0.6
235,033 + +0.3
235,033 + -1.5
235,033 + +0.8
235,033 + -2.6
235,033 + -1.0
235,033 + -0.6
235,033 + +0.6
235,033 + -0.7
235,033 + +0.1
235,033 + -0.1
235,034 - -0.2
235,034 - +0.7
235,034 - -1.3
235,034 - -0.3
235,034 - +0.1
235,034 - +0.7
235,034 - -1.0
235,034 - -0.6
235,034 - -0.1
235,034 - +0.7
235,034 - +1.7
235,037 + -1.0
235,037 + -0.6
235,037 + -0.2
235,037 + -0.0
235,037 + +0.2
235,037 + +1.0
235,037 + -1.6
235,037 + +0.0
235,037 + -0.8
235,038 - -1.4
235,049 + -0.6
235,049 + -0.6
235,049 + +0.5
235,050 - -1.0
235,059 + -0.0
235,059 + +0.1
235,097 + -0.6
235,097 + -0.5
235,097 + -0.0
235,097 + +0.0
235,097 + -1.5
235,097 + -3.0
235,097 + -1.5
235,097 + -1.1
235,097 + -0.3
235,098 - -0.2
235,098 - -0.6
235,098 - +1.1
235,178 + +0.7
235,178 + -0.3
235,178 + -0.7
235,178 + +0.9
235,178 + -0.1
235,178 + -0.7
235,178 + -0.1
235,178 + +0.5
235,178 + -1.1
235,178 + -1.4
235,178 + -0.3
235,179 - +0.7
235,179 - +1.3
235,179 - -0.1
235,179 - -0.7
235,179 - +0.0
235,179 - +0.1
235,179 - -1.5
235,181 + +0.7
235,181 + -0.8
235,181 + -0.5
235,182 - +0.4
235,182 - -0.9
235,182 - +0.1
235,229 + MPMX19_06959 0.11 -0.3
235,229 + MPMX19_06959 0.11 -0.1
235,229 + MPMX19_06959 0.11 -0.4
235,229 + MPMX19_06959 0.11 -0.6
235,230 - MPMX19_06959 0.11 -0.3
235,382 + MPMX19_06959 0.23 +0.3
235,383 - MPMX19_06959 0.23 -1.2
235,383 - MPMX19_06959 0.23 +0.4
235,397 + MPMX19_06959 0.24 -0.7
235,397 + MPMX19_06959 0.24 -1.3
235,398 - MPMX19_06959 0.25 -0.3
235,472 + MPMX19_06959 0.31 -0.9
235,472 + MPMX19_06959 0.31 +1.7
235,472 + MPMX19_06959 0.31 -2.2
235,473 - MPMX19_06959 0.31 -1.1
235,473 - MPMX19_06959 0.31 -1.8
235,473 - MPMX19_06959 0.31 +0.4
235,473 - MPMX19_06959 0.31 +0.2
235,787 + MPMX19_06959 0.56 -0.4
235,788 - MPMX19_06959 0.56 -0.4
235,788 - MPMX19_06959 0.56 -0.6
235,788 - MPMX19_06959 0.56 -0.4
235,806 - MPMX19_06959 0.58 +0.4
235,806 - MPMX19_06959 0.58 -1.1
235,806 - MPMX19_06959 0.58 +0.5
235,806 - MPMX19_06959 0.58 -0.6
235,806 - MPMX19_06959 0.58 -2.0
235,862 + MPMX19_06959 0.62 +0.4
235,862 + MPMX19_06959 0.62 +0.1
235,862 + MPMX19_06959 0.62 -0.1
235,863 - MPMX19_06959 0.62 -0.5
235,863 - MPMX19_06959 0.62 -0.7
235,871 + MPMX19_06959 0.63 -0.3
235,871 + MPMX19_06959 0.63 -0.6
235,871 + MPMX19_06959 0.63 +0.4
235,871 + MPMX19_06959 0.63 -0.2
235,871 + MPMX19_06959 0.63 -0.4
235,872 - MPMX19_06959 0.63 -0.0
235,872 - MPMX19_06959 0.63 +0.2

Or see this region's nucleotide sequence