Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06957

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06955 and MPMX19_06956 are separated by 18 nucleotidesMPMX19_06956 and MPMX19_06957 overlap by 8 nucleotidesMPMX19_06957 and MPMX19_06958 overlap by 4 nucleotides MPMX19_06955: MPMX19_06955 - High-affinity branched-chain amino acid transport system permease protein LivH, at 231,449 to 232,336 _06955 MPMX19_06956: MPMX19_06956 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 232,355 to 233,077 _06956 MPMX19_06957: MPMX19_06957 - Lipopolysaccharide export system ATP-binding protein LptB, at 233,070 to 233,846 _06957 MPMX19_06958: MPMX19_06958 - Citrate synthase 1, at 233,843 to 234,931 _06958 Position (kb) 233 234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 232.147 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.260 kb on + strandat 232.260 kb on + strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 233.016 kb on + strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.100 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.102 kb on - strandat 233.895 kb on + strandat 233.895 kb on + strandat 233.895 kb on + strandat 233.895 kb on + strandat 233.896 kb on - strandat 233.896 kb on - strandat 233.896 kb on - strandat 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.216 kb on + strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.217 kb on - strand, within MPMX19_06958at 234.468 kb on + strand, within MPMX19_06958at 234.468 kb on + strand, within MPMX19_06958at 234.469 kb on - strand, within MPMX19_06958at 234.469 kb on - strand, within MPMX19_06958at 234.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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232,147 - MPMX19_06955 0.79 -0.0
232,147 - MPMX19_06955 0.79 -1.3
232,147 - MPMX19_06955 0.79 -0.5
232,147 - MPMX19_06955 0.79 -0.3
232,147 - MPMX19_06955 0.79 +0.9
232,185 + MPMX19_06955 0.83 -0.3
232,185 + MPMX19_06955 0.83 +1.1
232,185 + MPMX19_06955 0.83 -0.1
232,185 + MPMX19_06955 0.83 -0.1
232,185 + MPMX19_06955 0.83 +0.6
232,185 + MPMX19_06955 0.83 -0.0
232,185 + MPMX19_06955 0.83 -0.9
232,185 + MPMX19_06955 0.83 +0.5
232,185 + MPMX19_06955 0.83 -0.7
232,185 + MPMX19_06955 0.83 -0.3
232,185 + MPMX19_06955 0.83 +0.8
232,185 + MPMX19_06955 0.83 -0.4
232,260 + +0.7
232,260 + -1.1
232,369 - +1.4
232,369 - -0.6
232,369 - +0.4
232,369 - -0.5
232,369 - -0.9
232,369 - -0.3
232,369 - -0.5
233,016 + -0.8
233,100 - +0.4
233,100 - -0.7
233,100 - +0.1
233,100 - +1.3
233,100 - -1.8
233,100 - -0.5
233,100 - -2.3
233,100 - +1.3
233,100 - +0.3
233,100 - -1.9
233,100 - -0.6
233,100 - +2.9
233,100 - -0.5
233,100 - -0.5
233,102 - +1.3
233,102 - -1.3
233,102 - -0.1
233,102 - -0.9
233,102 - +0.7
233,102 - +0.4
233,102 - -0.1
233,102 - -1.2
233,102 - -0.1
233,102 - -0.5
233,102 - +0.4
233,102 - -1.9
233,102 - -1.3
233,102 - +0.3
233,102 - -0.8
233,102 - -1.3
233,102 - -1.1
233,102 - +0.9
233,102 - -0.2
233,102 - -1.4
233,102 - -0.2
233,102 - -1.2
233,102 - +1.0
233,102 - +0.2
233,102 - -0.4
233,102 - -1.5
233,102 - -0.6
233,102 - -0.3
233,102 - +0.0
233,102 - -1.6
233,102 - -0.2
233,102 - +0.3
233,102 - +1.3
233,102 - -0.6
233,102 - +0.9
233,102 - -0.9
233,102 - +0.1
233,102 - +1.0
233,102 - -0.6
233,895 + +1.6
233,895 + -1.1
233,895 + -0.9
233,895 + -0.2
233,896 - -0.6
233,896 - +0.0
233,896 - +0.7
234,216 + MPMX19_06958 0.34 +0.1
234,216 + MPMX19_06958 0.34 -0.3
234,216 + MPMX19_06958 0.34 +0.5
234,216 + MPMX19_06958 0.34 -0.9
234,216 + MPMX19_06958 0.34 -0.3
234,216 + MPMX19_06958 0.34 +0.1
234,217 - MPMX19_06958 0.34 -0.6
234,217 - MPMX19_06958 0.34 +1.5
234,217 - MPMX19_06958 0.34 +0.0
234,217 - MPMX19_06958 0.34 +1.2
234,217 - MPMX19_06958 0.34 -1.1
234,217 - MPMX19_06958 0.34 -0.3
234,217 - MPMX19_06958 0.34 +0.8
234,217 - MPMX19_06958 0.34 +1.1
234,468 + MPMX19_06958 0.57 -0.3
234,468 + MPMX19_06958 0.57 -0.1
234,469 - MPMX19_06958 0.57 -0.0
234,469 - MPMX19_06958 0.57 +0.2
234,826 - +0.9

Or see this region's nucleotide sequence