Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06954

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06952 and MPMX19_06953 are separated by 16 nucleotidesMPMX19_06953 and MPMX19_06954 are separated by 65 nucleotidesMPMX19_06954 and MPMX19_06955 are separated by 3 nucleotidesMPMX19_06955 and MPMX19_06956 are separated by 18 nucleotides MPMX19_06952: MPMX19_06952 - Electron transfer flavoprotein subunit alpha, at 228,701 to 229,636 _06952 MPMX19_06953: MPMX19_06953 - Electron transfer flavoprotein subunit beta, at 229,653 to 230,402 _06953 MPMX19_06954: MPMX19_06954 - hypothetical protein, at 230,468 to 231,445 _06954 MPMX19_06955: MPMX19_06955 - High-affinity branched-chain amino acid transport system permease protein LivH, at 231,449 to 232,336 _06955 MPMX19_06956: MPMX19_06956 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 232,355 to 233,077 _06956 Position (kb) 230 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 229.534 kb on + strand, within MPMX19_06952at 230.409 kb on + strandat 230.409 kb on + strandat 230.409 kb on + strandat 230.410 kb on - strandat 230.410 kb on - strandat 230.416 kb on + strandat 230.416 kb on + strandat 230.416 kb on + strandat 230.417 kb on - strandat 230.417 kb on - strandat 230.596 kb on - strand, within MPMX19_06954at 230.596 kb on - strand, within MPMX19_06954at 230.596 kb on - strand, within MPMX19_06954at 230.596 kb on - strand, within MPMX19_06954at 230.596 kb on - strand, within MPMX19_06954at 231.337 kb on - strand, within MPMX19_06954at 231.337 kb on - strand, within MPMX19_06954at 231.399 kb on + strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.399 kb on + strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.400 kb on - strandat 231.409 kb on + strandat 231.450 kb on + strandat 231.450 kb on + strandat 231.450 kb on + strandat 231.450 kb on + strandat 231.451 kb on - strandat 231.451 kb on - strandat 231.451 kb on - strandat 231.451 kb on - strandat 231.482 kb on + strandat 231.482 kb on + strandat 231.483 kb on - strandat 231.483 kb on - strandat 231.537 kb on + strandat 231.538 kb on - strand, within MPMX19_06955at 231.538 kb on - strand, within MPMX19_06955at 231.733 kb on - strand, within MPMX19_06955at 231.733 kb on - strand, within MPMX19_06955at 231.733 kb on - strand, within MPMX19_06955at 231.892 kb on - strand, within MPMX19_06955at 231.892 kb on - strand, within MPMX19_06955at 231.903 kb on + strand, within MPMX19_06955at 231.903 kb on + strand, within MPMX19_06955at 231.903 kb on + strand, within MPMX19_06955at 231.903 kb on + strand, within MPMX19_06955at 231.904 kb on - strand, within MPMX19_06955at 231.904 kb on - strand, within MPMX19_06955at 231.904 kb on - strand, within MPMX19_06955at 231.904 kb on - strand, within MPMX19_06955at 231.952 kb on - strand, within MPMX19_06955at 231.972 kb on + strand, within MPMX19_06955at 231.973 kb on - strand, within MPMX19_06955at 231.973 kb on - strand, within MPMX19_06955at 231.973 kb on - strand, within MPMX19_06955at 232.032 kb on + strand, within MPMX19_06955at 232.032 kb on + strand, within MPMX19_06955at 232.033 kb on - strand, within MPMX19_06955at 232.033 kb on - strand, within MPMX19_06955at 232.050 kb on + strand, within MPMX19_06955at 232.050 kb on + strand, within MPMX19_06955at 232.050 kb on + strand, within MPMX19_06955at 232.051 kb on - strand, within MPMX19_06955at 232.051 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.147 kb on - strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.185 kb on + strand, within MPMX19_06955at 232.260 kb on + strandat 232.260 kb on + strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strandat 232.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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229,534 + MPMX19_06952 0.89 -0.6
230,409 + -1.8
230,409 + +1.1
230,409 + +0.4
230,410 - +0.3
230,410 - -0.4
230,416 + -0.8
230,416 + +0.7
230,416 + +0.3
230,417 - -0.3
230,417 - -0.2
230,596 - MPMX19_06954 0.13 +1.2
230,596 - MPMX19_06954 0.13 -0.5
230,596 - MPMX19_06954 0.13 +0.0
230,596 - MPMX19_06954 0.13 +0.7
230,596 - MPMX19_06954 0.13 +0.0
231,337 - MPMX19_06954 0.89 -0.4
231,337 - MPMX19_06954 0.89 +0.5
231,399 + -0.5
231,399 + -1.5
231,399 + -2.1
231,399 + -0.3
231,399 + -0.0
231,399 + -1.6
231,399 + -0.6
231,399 + -1.0
231,399 + +1.2
231,399 + -0.3
231,400 - -1.2
231,400 - -0.4
231,400 - +0.9
231,400 - +0.7
231,400 - +0.6
231,400 - -0.4
231,400 - -0.6
231,400 - -0.7
231,400 - +1.1
231,400 - -3.0
231,400 - +0.2
231,409 + +0.3
231,450 + -0.5
231,450 + -0.2
231,450 + -0.4
231,450 + -0.4
231,451 - +0.1
231,451 - -0.3
231,451 - +0.1
231,451 - -0.8
231,482 + -0.3
231,482 + +0.9
231,483 - +2.4
231,483 - +0.4
231,537 + -1.0
231,538 - MPMX19_06955 0.10 -1.5
231,538 - MPMX19_06955 0.10 -0.1
231,733 - MPMX19_06955 0.32 -1.1
231,733 - MPMX19_06955 0.32 +0.6
231,733 - MPMX19_06955 0.32 -1.8
231,892 - MPMX19_06955 0.50 -0.6
231,892 - MPMX19_06955 0.50 -0.4
231,903 + MPMX19_06955 0.51 +0.7
231,903 + MPMX19_06955 0.51 +0.4
231,903 + MPMX19_06955 0.51 -1.6
231,903 + MPMX19_06955 0.51 +0.6
231,904 - MPMX19_06955 0.51 +0.1
231,904 - MPMX19_06955 0.51 -0.9
231,904 - MPMX19_06955 0.51 -0.9
231,904 - MPMX19_06955 0.51 -0.8
231,952 - MPMX19_06955 0.57 -0.2
231,972 + MPMX19_06955 0.59 +1.0
231,973 - MPMX19_06955 0.59 -0.0
231,973 - MPMX19_06955 0.59 -0.3
231,973 - MPMX19_06955 0.59 +0.3
232,032 + MPMX19_06955 0.66 -0.2
232,032 + MPMX19_06955 0.66 +0.6
232,033 - MPMX19_06955 0.66 +1.3
232,033 - MPMX19_06955 0.66 -0.4
232,050 + MPMX19_06955 0.68 -0.3
232,050 + MPMX19_06955 0.68 -0.1
232,050 + MPMX19_06955 0.68 -0.8
232,051 - MPMX19_06955 0.68 +0.1
232,051 - MPMX19_06955 0.68 -0.8
232,147 - MPMX19_06955 0.79 -0.0
232,147 - MPMX19_06955 0.79 -1.3
232,147 - MPMX19_06955 0.79 -0.5
232,147 - MPMX19_06955 0.79 -0.3
232,147 - MPMX19_06955 0.79 +0.9
232,185 + MPMX19_06955 0.83 -0.3
232,185 + MPMX19_06955 0.83 +1.1
232,185 + MPMX19_06955 0.83 -0.1
232,185 + MPMX19_06955 0.83 -0.1
232,185 + MPMX19_06955 0.83 +0.6
232,185 + MPMX19_06955 0.83 -0.0
232,185 + MPMX19_06955 0.83 -0.9
232,185 + MPMX19_06955 0.83 +0.5
232,185 + MPMX19_06955 0.83 -0.7
232,185 + MPMX19_06955 0.83 -0.3
232,185 + MPMX19_06955 0.83 +0.8
232,185 + MPMX19_06955 0.83 -0.4
232,260 + +0.7
232,260 + -1.1
232,369 - +1.4
232,369 - -0.6
232,369 - +0.4
232,369 - -0.5
232,369 - -0.9
232,369 - -0.3
232,369 - -0.5

Or see this region's nucleotide sequence