Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06922 and MPMX19_06923 are separated by 29 nucleotides MPMX19_06923 and MPMX19_06924 overlap by 46 nucleotides MPMX19_06924 and MPMX19_06925 are separated by 278 nucleotides
MPMX19_06922: MPMX19_06922 - hypothetical protein, at 197,289 to 197,678
_06922
MPMX19_06923: MPMX19_06923 - hypothetical protein, at 197,708 to 198,541
_06923
MPMX19_06924: MPMX19_06924 - hypothetical protein, at 198,496 to 199,911
_06924
MPMX19_06925: MPMX19_06925 - Putative HMP/thiamine import ATP-binding protein YkoD, at 200,190 to 201,533
_06925
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 197.619 kb on + strand, within MPMX19_06922 at 197.620 kb on - strand, within MPMX19_06922 at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 198.125 kb on + strand, within MPMX19_06923 at 198.125 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.495 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.905 kb on - strand, within MPMX19_06924 at 198.905 kb on - strand, within MPMX19_06924 at 198.925 kb on + strand, within MPMX19_06924 at 198.925 kb on + strand, within MPMX19_06924 at 198.931 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.810 kb on + strand at 199.810 kb on + strand at 199.810 kb on + strand at 199.810 kb on + strand at 199.811 kb on - strand at 199.811 kb on - strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.813 kb on - strand at 199.813 kb on - strand at 199.843 kb on - strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.907 kb on + strand at 200.063 kb on - strand at 200.095 kb on + strand at 200.095 kb on + strand at 200.095 kb on + strand at 200.096 kb on - strand at 200.096 kb on - strand at 200.096 kb on - strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.150 kb on - strand at 200.150 kb on - strand at 200.150 kb on - strand at 200.159 kb on + strand at 200.173 kb on + strand at 200.173 kb on + strand at 200.174 kb on - strand at 200.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 197,619 + MPMX19_06922 0.85 -0.2 197,620 - MPMX19_06922 0.85 +0.5 197,711 + +0.7 197,711 + -0.3 197,711 + -0.5 197,711 + -0.0 197,711 + -0.6 197,711 + -0.1 197,712 - +0.1 197,712 - -0.4 197,712 - +0.0 197,712 - +0.7 197,712 - -0.9 198,125 + MPMX19_06923 0.50 -0.8 198,125 + MPMX19_06923 0.50 -0.3 198,212 + MPMX19_06923 0.60 -0.6 198,212 + MPMX19_06923 0.60 -1.1 198,212 + MPMX19_06923 0.60 -0.7 198,212 + MPMX19_06923 0.60 -0.2 198,213 - MPMX19_06923 0.61 -0.6 198,213 - MPMX19_06923 0.61 +0.0 198,213 - MPMX19_06923 0.61 -0.3 198,213 - MPMX19_06923 0.61 -0.3 198,213 - MPMX19_06923 0.61 -1.6 198,495 + -0.4 198,625 + +0.3 198,625 + -0.1 198,625 + -1.0 198,625 + +0.9 198,625 + -1.5 198,625 + -0.5 198,625 + -1.5 198,625 + -0.3 198,626 - +0.4 198,626 - +0.7 198,626 - +0.5 198,626 - -1.6 198,626 - -1.8 198,626 - +0.1 198,626 - +0.5 198,626 - -0.5 198,626 - -1.2 198,626 - -0.9 198,626 - -2.6 198,626 - -0.6 198,626 - -1.4 198,626 - +1.0 198,626 - +0.7 198,626 - +0.1 198,626 - -1.3 198,626 - -1.4 198,626 - -0.1 198,905 - MPMX19_06924 0.29 +2.9 198,905 - MPMX19_06924 0.29 +0.7 198,925 + MPMX19_06924 0.30 +0.6 198,925 + MPMX19_06924 0.30 +1.4 198,931 + MPMX19_06924 0.31 +0.7 199,140 + MPMX19_06924 0.45 -0.0 199,140 + MPMX19_06924 0.45 +0.9 199,140 + MPMX19_06924 0.45 -1.3 199,140 + MPMX19_06924 0.45 -1.3 199,140 + MPMX19_06924 0.45 -1.1 199,140 + MPMX19_06924 0.45 +0.5 199,141 - MPMX19_06924 0.46 +1.0 199,141 - MPMX19_06924 0.46 -0.3 199,141 - MPMX19_06924 0.46 -0.3 199,141 - MPMX19_06924 0.46 -0.0 199,141 - MPMX19_06924 0.46 +1.0 199,141 - MPMX19_06924 0.46 -0.2 199,810 + +0.9 199,810 + -1.5 199,810 + -0.8 199,810 + -1.5 199,811 - -0.3 199,811 - -0.4 199,812 + +0.5 199,812 + -0.8 199,812 + +0.3 199,812 + -1.0 199,813 - -0.0 199,813 - -0.7 199,843 - -0.7 199,907 + -1.5 199,907 + -0.6 199,907 + -0.3 199,907 + +2.1 200,063 - -1.3 200,095 + -2.0 200,095 + -1.2 200,095 + -0.6 200,096 - -2.0 200,096 - -0.6 200,096 - +0.7 200,149 + -0.5 200,149 + -0.3 200,149 + -1.9 200,149 + +0.1 200,149 + -1.1 200,150 - +0.7 200,150 - -0.9 200,150 - -0.9 200,159 + -0.2 200,173 + -1.3 200,173 + -0.5 200,174 - -1.2 200,174 - -0.1
Or see this region's nucleotide sequence