Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06914

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06913 and MPMX19_06914 are separated by 64 nucleotidesMPMX19_06914 and MPMX19_06915 are separated by 28 nucleotides MPMX19_06913: MPMX19_06913 - D-galactarolactone cycloisomerase, at 188,473 to 189,573 _06913 MPMX19_06914: MPMX19_06914 - Acyl-CoA dehydrogenase FadE27, at 189,638 to 190,723 _06914 MPMX19_06915: MPMX19_06915 - Putative acyl-CoA dehydrogenase FadE17, at 190,752 to 191,894 _06915 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2at 188.776 kb on + strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.777 kb on - strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.884 kb on + strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 188.885 kb on - strand, within MPMX19_06913at 189.189 kb on + strand, within MPMX19_06913at 189.190 kb on - strand, within MPMX19_06913at 189.259 kb on + strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.260 kb on - strand, within MPMX19_06913at 189.361 kb on + strand, within MPMX19_06913at 189.362 kb on + strand, within MPMX19_06913at 189.436 kb on + strand, within MPMX19_06913at 189.436 kb on + strand, within MPMX19_06913at 189.437 kb on - strand, within MPMX19_06913at 189.437 kb on - strand, within MPMX19_06913at 189.437 kb on - strand, within MPMX19_06913at 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.637 kb on + strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.638 kb on - strandat 189.679 kb on + strandat 189.680 kb on - strandat 190.337 kb on + strand, within MPMX19_06914at 190.337 kb on + strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914at 190.980 kb on + strand, within MPMX19_06915at 190.980 kb on + strand, within MPMX19_06915at 190.980 kb on + strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.561 kb on + strand, within MPMX19_06915at 191.562 kb on - strand, within MPMX19_06915

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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188,776 + MPMX19_06913 0.28 -1.6
188,777 - MPMX19_06913 0.28 -0.5
188,777 - MPMX19_06913 0.28 -0.9
188,777 - MPMX19_06913 0.28 +2.1
188,777 - MPMX19_06913 0.28 +0.3
188,884 + MPMX19_06913 0.37 -2.0
188,884 + MPMX19_06913 0.37 -0.9
188,884 + MPMX19_06913 0.37 -1.5
188,884 + MPMX19_06913 0.37 -0.1
188,884 + MPMX19_06913 0.37 +0.3
188,884 + MPMX19_06913 0.37 -1.6
188,885 - MPMX19_06913 0.37 -0.9
188,885 - MPMX19_06913 0.37 +0.1
188,885 - MPMX19_06913 0.37 -0.1
189,189 + MPMX19_06913 0.65 +0.3
189,190 - MPMX19_06913 0.65 -1.0
189,259 + MPMX19_06913 0.71 -0.4
189,260 - MPMX19_06913 0.71 +0.0
189,260 - MPMX19_06913 0.71 -0.1
189,260 - MPMX19_06913 0.71 +0.2
189,260 - MPMX19_06913 0.71 +0.4
189,260 - MPMX19_06913 0.71 +0.6
189,260 - MPMX19_06913 0.71 +0.7
189,260 - MPMX19_06913 0.71 -0.6
189,361 + MPMX19_06913 0.81 -0.7
189,362 + MPMX19_06913 0.81 -1.0
189,436 + MPMX19_06913 0.87 -0.5
189,436 + MPMX19_06913 0.87 -0.6
189,437 - MPMX19_06913 0.88 +1.5
189,437 - MPMX19_06913 0.88 -0.6
189,437 - MPMX19_06913 0.88 -0.5
189,637 + -2.3
189,637 + +0.6
189,637 + -0.3
189,637 + -1.0
189,637 + +0.1
189,637 + +1.1
189,637 + -2.2
189,637 + +2.1
189,637 + -2.2
189,637 + +0.3
189,637 + +0.7
189,637 + -0.5
189,637 + +0.5
189,637 + -0.3
189,637 + +1.1
189,637 + +0.7
189,637 + +0.9
189,637 + -1.1
189,637 + -0.2
189,637 + -0.7
189,637 + -0.1
189,637 + -1.0
189,637 + -0.8
189,637 + -0.6
189,637 + +0.6
189,637 + +1.3
189,637 + -2.0
189,638 - -0.0
189,638 - -0.4
189,638 - +0.3
189,638 - +0.1
189,638 - -1.0
189,638 - -0.8
189,638 - +0.3
189,638 - +0.1
189,638 - -0.2
189,638 - -0.7
189,638 - -0.6
189,638 - -0.4
189,638 - +0.1
189,638 - -1.0
189,638 - -0.3
189,638 - +0.7
189,638 - -0.5
189,638 - +0.9
189,638 - -0.4
189,638 - +1.5
189,638 - -0.8
189,679 + -2.0
189,680 - +0.1
190,337 + MPMX19_06914 0.64 +1.5
190,337 + MPMX19_06914 0.64 +0.4
190,338 - MPMX19_06914 0.64 -1.5
190,338 - MPMX19_06914 0.64 -1.3
190,338 - MPMX19_06914 0.64 -0.2
190,980 + MPMX19_06915 0.20 +0.3
190,980 + MPMX19_06915 0.20 -0.5
190,980 + MPMX19_06915 0.20 +0.0
190,981 - MPMX19_06915 0.20 -0.1
190,981 - MPMX19_06915 0.20 -0.4
190,981 - MPMX19_06915 0.20 -1.2
190,981 - MPMX19_06915 0.20 -0.1
190,981 - MPMX19_06915 0.20 +0.1
190,981 - MPMX19_06915 0.20 +0.5
190,981 - MPMX19_06915 0.20 +2.3
190,981 - MPMX19_06915 0.20 +0.7
190,981 - MPMX19_06915 0.20 -0.3
190,981 - MPMX19_06915 0.20 +0.1
190,981 - MPMX19_06915 0.20 -1.6
191,244 + MPMX19_06915 0.43 -0.8
191,244 + MPMX19_06915 0.43 -0.1
191,244 + MPMX19_06915 0.43 -1.5
191,244 + MPMX19_06915 0.43 -0.3
191,244 + MPMX19_06915 0.43 -0.5
191,244 + MPMX19_06915 0.43 -0.3
191,244 + MPMX19_06915 0.43 -0.8
191,245 - MPMX19_06915 0.43 -0.2
191,245 - MPMX19_06915 0.43 +0.3
191,245 - MPMX19_06915 0.43 +0.5
191,262 + MPMX19_06915 0.45 +1.7
191,262 + MPMX19_06915 0.45 +0.4
191,262 + MPMX19_06915 0.45 +1.3
191,262 + MPMX19_06915 0.45 +0.1
191,262 + MPMX19_06915 0.45 -1.7
191,262 + MPMX19_06915 0.45 -0.4
191,262 + MPMX19_06915 0.45 -0.6
191,263 - MPMX19_06915 0.45 +0.3
191,263 - MPMX19_06915 0.45 -1.2
191,263 - MPMX19_06915 0.45 -2.6
191,263 - MPMX19_06915 0.45 -0.1
191,263 - MPMX19_06915 0.45 +0.7
191,263 - MPMX19_06915 0.45 -1.0
191,263 - MPMX19_06915 0.45 -1.3
191,561 + MPMX19_06915 0.71 -0.3
191,562 - MPMX19_06915 0.71 +0.7

Or see this region's nucleotide sequence