Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06907

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06906 and MPMX19_06907 are separated by 58 nucleotidesMPMX19_06907 and MPMX19_06908 are separated by 359 nucleotides MPMX19_06906: MPMX19_06906 - Acetyl-CoA:oxalate CoA-transferase, at 180,819 to 182,033 _06906 MPMX19_06907: MPMX19_06907 - L-talarate/galactarate dehydratase, at 182,092 to 183,267 _06907 MPMX19_06908: MPMX19_06908 - Leu/Ile/Val-binding protein, at 183,627 to 184,835 _06908 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1 2at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.204 kb on - strand, within MPMX19_06906at 181.204 kb on - strand, within MPMX19_06906at 181.288 kb on + strand, within MPMX19_06906at 181.288 kb on + strand, within MPMX19_06906at 181.288 kb on + strand, within MPMX19_06906at 181.289 kb on - strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.469 kb on - strand, within MPMX19_06906at 181.469 kb on - strand, within MPMX19_06906at 181.630 kb on + strand, within MPMX19_06906at 181.630 kb on + strand, within MPMX19_06906at 181.630 kb on + strand, within MPMX19_06906at 181.630 kb on + strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.666 kb on + strand, within MPMX19_06906at 181.666 kb on + strand, within MPMX19_06906at 181.667 kb on - strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.816 kb on + strand, within MPMX19_06906at 181.816 kb on + strand, within MPMX19_06906at 181.816 kb on + strand, within MPMX19_06906at 181.816 kb on + strand, within MPMX19_06906at 181.817 kb on - strand, within MPMX19_06906at 181.817 kb on - strand, within MPMX19_06906at 181.817 kb on - strand, within MPMX19_06906at 181.817 kb on - strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.838 kb on - strand, within MPMX19_06906at 181.838 kb on - strand, within MPMX19_06906at 181.838 kb on - strand, within MPMX19_06906at 182.046 kb on + strandat 182.047 kb on - strandat 182.047 kb on - strandat 182.047 kb on - strandat 182.351 kb on + strand, within MPMX19_06907at 182.351 kb on + strand, within MPMX19_06907at 182.352 kb on - strand, within MPMX19_06907at 182.432 kb on + strand, within MPMX19_06907at 182.432 kb on + strand, within MPMX19_06907at 182.433 kb on - strand, within MPMX19_06907at 182.433 kb on - strand, within MPMX19_06907at 182.780 kb on + strand, within MPMX19_06907at 182.780 kb on + strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.820 kb on - strand, within MPMX19_06907at 182.820 kb on - strand, within MPMX19_06907at 183.044 kb on + strand, within MPMX19_06907at 183.607 kb on + strandat 183.611 kb on + strandat 183.611 kb on + strandat 183.611 kb on + strandat 183.612 kb on - strandat 183.612 kb on - strandat 183.612 kb on - strandat 183.864 kb on - strand, within MPMX19_06908at 183.864 kb on - strand, within MPMX19_06908at 184.072 kb on - strand, within MPMX19_06908at 184.132 kb on - strand, within MPMX19_06908at 184.188 kb on + strand, within MPMX19_06908at 184.251 kb on + strand, within MPMX19_06908at 184.251 kb on + strand, within MPMX19_06908at 184.251 kb on + strand, within MPMX19_06908at 184.251 kb on + strand, within MPMX19_06908at 184.252 kb on - strand, within MPMX19_06908at 184.252 kb on - strand, within MPMX19_06908at 184.252 kb on - strand, within MPMX19_06908

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
181,203 + MPMX19_06906 0.32 -0.8
181,203 + MPMX19_06906 0.32 +0.0
181,203 + MPMX19_06906 0.32 -1.3
181,203 + MPMX19_06906 0.32 -0.1
181,203 + MPMX19_06906 0.32 +0.5
181,203 + MPMX19_06906 0.32 -0.3
181,203 + MPMX19_06906 0.32 -1.3
181,204 - MPMX19_06906 0.32 +0.3
181,204 - MPMX19_06906 0.32 -0.3
181,288 + MPMX19_06906 0.39 -0.3
181,288 + MPMX19_06906 0.39 -2.1
181,288 + MPMX19_06906 0.39 -0.3
181,289 - MPMX19_06906 0.39 +0.2
181,468 + MPMX19_06906 0.53 -0.5
181,468 + MPMX19_06906 0.53 -1.2
181,468 + MPMX19_06906 0.53 -0.0
181,468 + MPMX19_06906 0.53 -1.0
181,468 + MPMX19_06906 0.53 +0.3
181,468 + MPMX19_06906 0.53 -0.3
181,469 - MPMX19_06906 0.53 -0.3
181,469 - MPMX19_06906 0.53 -1.1
181,630 + MPMX19_06906 0.67 -0.6
181,630 + MPMX19_06906 0.67 -0.1
181,630 + MPMX19_06906 0.67 -2.0
181,630 + MPMX19_06906 0.67 -1.8
181,631 - MPMX19_06906 0.67 -0.0
181,631 - MPMX19_06906 0.67 -1.3
181,631 - MPMX19_06906 0.67 -0.9
181,631 - MPMX19_06906 0.67 -0.4
181,631 - MPMX19_06906 0.67 +0.4
181,666 + MPMX19_06906 0.70 -0.1
181,666 + MPMX19_06906 0.70 -0.3
181,667 - MPMX19_06906 0.70 +0.4
181,813 + MPMX19_06906 0.82 -0.4
181,813 + MPMX19_06906 0.82 -1.5
181,813 + MPMX19_06906 0.82 -1.8
181,813 + MPMX19_06906 0.82 -0.4
181,813 + MPMX19_06906 0.82 -0.8
181,813 + MPMX19_06906 0.82 -0.2
181,813 + MPMX19_06906 0.82 -0.9
181,813 + MPMX19_06906 0.82 -0.5
181,813 + MPMX19_06906 0.82 -0.5
181,813 + MPMX19_06906 0.82 -1.4
181,814 - MPMX19_06906 0.82 +0.2
181,814 - MPMX19_06906 0.82 -1.6
181,814 - MPMX19_06906 0.82 +0.4
181,814 - MPMX19_06906 0.82 -0.8
181,814 - MPMX19_06906 0.82 +0.2
181,814 - MPMX19_06906 0.82 +0.6
181,814 - MPMX19_06906 0.82 +0.9
181,814 - MPMX19_06906 0.82 -0.9
181,814 - MPMX19_06906 0.82 -1.1
181,814 - MPMX19_06906 0.82 +0.1
181,816 + MPMX19_06906 0.82 -0.5
181,816 + MPMX19_06906 0.82 -0.2
181,816 + MPMX19_06906 0.82 -0.1
181,816 + MPMX19_06906 0.82 -1.2
181,817 - MPMX19_06906 0.82 -1.9
181,817 - MPMX19_06906 0.82 -1.0
181,817 - MPMX19_06906 0.82 -1.8
181,817 - MPMX19_06906 0.82 -1.6
181,837 + MPMX19_06906 0.84 +0.9
181,837 + MPMX19_06906 0.84 -0.0
181,837 + MPMX19_06906 0.84 +0.5
181,837 + MPMX19_06906 0.84 -0.3
181,837 + MPMX19_06906 0.84 -1.2
181,837 + MPMX19_06906 0.84 -0.6
181,837 + MPMX19_06906 0.84 +0.3
181,837 + MPMX19_06906 0.84 -0.5
181,837 + MPMX19_06906 0.84 -0.0
181,837 + MPMX19_06906 0.84 -0.3
181,838 - MPMX19_06906 0.84 -0.1
181,838 - MPMX19_06906 0.84 +0.7
181,838 - MPMX19_06906 0.84 +0.7
182,046 + -0.3
182,047 - +0.1
182,047 - -0.3
182,047 - -0.9
182,351 + MPMX19_06907 0.22 +0.5
182,351 + MPMX19_06907 0.22 +0.3
182,352 - MPMX19_06907 0.22 +0.5
182,432 + MPMX19_06907 0.29 -0.9
182,432 + MPMX19_06907 0.29 +1.1
182,433 - MPMX19_06907 0.29 +0.8
182,433 - MPMX19_06907 0.29 +1.5
182,780 + MPMX19_06907 0.59 +0.7
182,780 + MPMX19_06907 0.59 -0.1
182,781 - MPMX19_06907 0.59 +0.3
182,781 - MPMX19_06907 0.59 +0.1
182,781 - MPMX19_06907 0.59 +0.1
182,820 - MPMX19_06907 0.62 +1.0
182,820 - MPMX19_06907 0.62 +0.1
183,044 + MPMX19_06907 0.81 -0.3
183,607 + -0.1
183,611 + +0.2
183,611 + +0.3
183,611 + +1.3
183,612 - -0.2
183,612 - +0.4
183,612 - -0.3
183,864 - MPMX19_06908 0.20 +2.0
183,864 - MPMX19_06908 0.20 -0.5
184,072 - MPMX19_06908 0.37 +0.1
184,132 - MPMX19_06908 0.42 -0.3
184,188 + MPMX19_06908 0.46 +0.7
184,251 + MPMX19_06908 0.52 -0.4
184,251 + MPMX19_06908 0.52 +1.0
184,251 + MPMX19_06908 0.52 +0.5
184,251 + MPMX19_06908 0.52 -0.2
184,252 - MPMX19_06908 0.52 +0.1
184,252 - MPMX19_06908 0.52 -0.6
184,252 - MPMX19_06908 0.52 -0.7

Or see this region's nucleotide sequence