Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06898

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06896 and MPMX19_06897 are separated by 203 nucleotidesMPMX19_06897 and MPMX19_06898 are separated by 43 nucleotidesMPMX19_06898 and MPMX19_06899 overlap by 4 nucleotides MPMX19_06896: MPMX19_06896 - L-aspartate oxidase, at 170,007 to 171,695 _06896 MPMX19_06897: MPMX19_06897 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 171,899 to 172,384 _06897 MPMX19_06898: MPMX19_06898 - FAD-dependent urate hydroxylase, at 172,428 to 173,885 _06898 MPMX19_06899: MPMX19_06899 - hypothetical protein, at 173,882 to 174,973 _06899 Position (kb) 172 173 174Strain fitness (log2 ratio) -2 -1 0 1at 171.512 kb on - strand, within MPMX19_06896at 171.512 kb on - strand, within MPMX19_06896at 171.872 kb on + strandat 171.905 kb on - strandat 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 172.008 kb on - strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.358 kb on + strandat 172.359 kb on - strandat 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.855 kb on - strand, within MPMX19_06898at 172.855 kb on - strand, within MPMX19_06898at 172.855 kb on - strand, within MPMX19_06898at 172.940 kb on - strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 173.799 kb on + strandat 174.299 kb on + strand, within MPMX19_06899at 174.299 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.608 kb on + strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.609 kb on - strand, within MPMX19_06899at 174.684 kb on - strand, within MPMX19_06899at 174.684 kb on - strand, within MPMX19_06899

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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171,512 - MPMX19_06896 0.89 -0.8
171,512 - MPMX19_06896 0.89 -1.1
171,872 + -1.8
171,905 - -0.7
171,971 + MPMX19_06897 0.15 +0.2
171,971 + MPMX19_06897 0.15 -0.8
171,971 + MPMX19_06897 0.15 -1.5
171,971 + MPMX19_06897 0.15 +0.8
172,008 - MPMX19_06897 0.22 +0.5
172,280 + MPMX19_06897 0.78 -1.8
172,280 + MPMX19_06897 0.78 -2.0
172,280 + MPMX19_06897 0.78 -0.3
172,280 + MPMX19_06897 0.78 -0.5
172,280 + MPMX19_06897 0.78 -0.6
172,358 + -0.8
172,359 - +0.3
172,701 + MPMX19_06898 0.19 -0.1
172,701 + MPMX19_06898 0.19 +0.7
172,701 + MPMX19_06898 0.19 +0.4
172,701 + MPMX19_06898 0.19 +0.1
172,701 + MPMX19_06898 0.19 -0.8
172,701 + MPMX19_06898 0.19 -0.1
172,702 - MPMX19_06898 0.19 -0.5
172,702 - MPMX19_06898 0.19 -0.5
172,702 - MPMX19_06898 0.19 -0.6
172,702 - MPMX19_06898 0.19 +0.9
172,702 - MPMX19_06898 0.19 +0.2
172,702 - MPMX19_06898 0.19 -2.0
172,702 - MPMX19_06898 0.19 -0.0
172,702 - MPMX19_06898 0.19 -0.2
172,702 - MPMX19_06898 0.19 +1.1
172,702 - MPMX19_06898 0.19 +1.0
172,702 - MPMX19_06898 0.19 +0.8
172,702 - MPMX19_06898 0.19 -0.4
172,702 - MPMX19_06898 0.19 -0.4
172,702 - MPMX19_06898 0.19 -0.3
172,702 - MPMX19_06898 0.19 -0.2
172,702 - MPMX19_06898 0.19 -1.3
172,855 - MPMX19_06898 0.29 -0.4
172,855 - MPMX19_06898 0.29 -0.0
172,855 - MPMX19_06898 0.29 +0.1
172,940 - MPMX19_06898 0.35 +1.0
173,196 + MPMX19_06898 0.53 +0.1
173,196 + MPMX19_06898 0.53 -0.7
173,196 + MPMX19_06898 0.53 -1.0
173,196 + MPMX19_06898 0.53 -0.8
173,316 + MPMX19_06898 0.61 +0.4
173,316 + MPMX19_06898 0.61 -0.6
173,316 + MPMX19_06898 0.61 +0.5
173,316 + MPMX19_06898 0.61 -2.2
173,316 + MPMX19_06898 0.61 -0.6
173,316 + MPMX19_06898 0.61 +1.7
173,316 + MPMX19_06898 0.61 +0.5
173,799 + +0.7
173,799 + -0.8
173,799 + -0.9
173,799 + +0.4
173,799 + -1.1
173,799 + -0.0
173,799 + -1.4
174,299 + MPMX19_06899 0.38 -0.1
174,299 + MPMX19_06899 0.38 -1.2
174,608 + MPMX19_06899 0.66 -1.6
174,608 + MPMX19_06899 0.66 -0.8
174,608 + MPMX19_06899 0.66 +1.2
174,608 + MPMX19_06899 0.66 -0.2
174,608 + MPMX19_06899 0.66 +0.2
174,608 + MPMX19_06899 0.66 -0.8
174,608 + MPMX19_06899 0.66 -0.7
174,608 + MPMX19_06899 0.66 -0.5
174,608 + MPMX19_06899 0.66 -0.8
174,608 + MPMX19_06899 0.66 -0.6
174,608 + MPMX19_06899 0.66 -2.6
174,608 + MPMX19_06899 0.66 +0.7
174,608 + MPMX19_06899 0.66 -0.2
174,608 + MPMX19_06899 0.66 +0.5
174,608 + MPMX19_06899 0.66 +0.1
174,608 + MPMX19_06899 0.66 +0.1
174,608 + MPMX19_06899 0.66 -1.5
174,608 + MPMX19_06899 0.66 +1.1
174,608 + MPMX19_06899 0.66 -1.0
174,609 - MPMX19_06899 0.67 +0.5
174,609 - MPMX19_06899 0.67 +0.7
174,609 - MPMX19_06899 0.67 +1.0
174,609 - MPMX19_06899 0.67 -0.2
174,609 - MPMX19_06899 0.67 -1.1
174,609 - MPMX19_06899 0.67 +0.8
174,609 - MPMX19_06899 0.67 +0.7
174,609 - MPMX19_06899 0.67 -1.0
174,609 - MPMX19_06899 0.67 -0.7
174,609 - MPMX19_06899 0.67 +0.3
174,609 - MPMX19_06899 0.67 -0.2
174,609 - MPMX19_06899 0.67 -0.6
174,609 - MPMX19_06899 0.67 -0.5
174,609 - MPMX19_06899 0.67 -0.9
174,609 - MPMX19_06899 0.67 -0.3
174,684 - MPMX19_06899 0.73 -1.3
174,684 - MPMX19_06899 0.73 -0.0

Or see this region's nucleotide sequence