Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06887 and MPMX19_06888 are separated by 2 nucleotides MPMX19_06888 and MPMX19_06889 are separated by 9 nucleotides
MPMX19_06887: MPMX19_06887 - Adenine deaminase, at 158,829 to 160,508
_06887
MPMX19_06888: MPMX19_06888 - hypothetical protein, at 160,511 to 161,962
_06888
MPMX19_06889: MPMX19_06889 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 161,972 to 164,272
_06889
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1 at 159.544 kb on - strand, within MPMX19_06887 at 160.019 kb on + strand, within MPMX19_06887 at 160.020 kb on - strand, within MPMX19_06887 at 160.661 kb on + strand, within MPMX19_06888 at 160.661 kb on + strand, within MPMX19_06888 at 160.662 kb on - strand, within MPMX19_06888 at 160.662 kb on - strand, within MPMX19_06888 at 160.856 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 162.168 kb on + strand at 162.168 kb on + strand at 162.169 kb on - strand at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 159,544 - MPMX19_06887 0.43 -1.7 160,019 + MPMX19_06887 0.71 -1.5 160,020 - MPMX19_06887 0.71 +0.7 160,661 + MPMX19_06888 0.10 +0.4 160,661 + MPMX19_06888 0.10 -2.2 160,662 - MPMX19_06888 0.10 -1.8 160,662 - MPMX19_06888 0.10 -0.0 160,856 + MPMX19_06888 0.24 -0.2 161,681 + MPMX19_06888 0.81 +0.3 161,681 + MPMX19_06888 0.81 -0.9 161,681 + MPMX19_06888 0.81 +1.4 161,681 + MPMX19_06888 0.81 +1.3 161,681 + MPMX19_06888 0.81 -0.1 161,681 + MPMX19_06888 0.81 -1.1 161,682 - MPMX19_06888 0.81 +0.5 161,682 - MPMX19_06888 0.81 +1.4 161,682 - MPMX19_06888 0.81 +0.6 161,682 - MPMX19_06888 0.81 +0.7 161,682 - MPMX19_06888 0.81 +1.5 161,858 + +0.5 161,858 + -0.3 161,858 + -0.1 161,858 + -1.3 161,858 + -0.8 161,858 + -0.1 161,859 - +0.3 161,859 - -1.1 161,859 - -0.3 161,859 - +0.1 161,859 - +1.2 161,859 - +0.5 161,859 - +0.5 161,859 - +0.1 161,859 - -1.3 161,859 - -0.2 161,859 - -0.6 161,859 - +0.1 162,168 + -0.0 162,168 + -0.4 162,169 - +0.9 162,370 - MPMX19_06889 0.17 -0.6 162,370 - MPMX19_06889 0.17 -0.9 162,370 - MPMX19_06889 0.17 +0.9 162,370 - MPMX19_06889 0.17 -0.1 162,370 - MPMX19_06889 0.17 -2.0 162,370 - MPMX19_06889 0.17 -0.6
Or see this region's nucleotide sequence