Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06885

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06884 and MPMX19_06885 are separated by 8 nucleotidesMPMX19_06885 and MPMX19_06886 overlap by 4 nucleotidesMPMX19_06886 and MPMX19_06887 are separated by 10 nucleotides MPMX19_06884: MPMX19_06884 - hypothetical protein, at 156,064 to 157,110 _06884 MPMX19_06885: MPMX19_06885 - Nitrate import ATP-binding protein NrtD, at 157,119 to 157,931 _06885 MPMX19_06886: MPMX19_06886 - Putative aliphatic sulfonates transport permease protein SsuC, at 157,928 to 158,818 _06886 MPMX19_06887: MPMX19_06887 - Adenine deaminase, at 158,829 to 160,508 _06887 Position (kb) 157 158Strain fitness (log2 ratio) -2 -1 0 1 2at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.431 kb on - strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884at 157.429 kb on + strand, within MPMX19_06885at 157.430 kb on - strand, within MPMX19_06885at 157.430 kb on - strand, within MPMX19_06885at 157.430 kb on - strand, within MPMX19_06885at 157.519 kb on - strand, within MPMX19_06885at 157.840 kb on - strand, within MPMX19_06885at 157.840 kb on - strand, within MPMX19_06885at 158.374 kb on - strand, within MPMX19_06886at 158.374 kb on - strand, within MPMX19_06886at 158.504 kb on + strand, within MPMX19_06886at 158.504 kb on + strand, within MPMX19_06886at 158.504 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.508 kb on + strand, within MPMX19_06886at 158.509 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886at 158.673 kb on - strand, within MPMX19_06886

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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156,422 - MPMX19_06884 0.34 -0.0
156,422 - MPMX19_06884 0.34 -1.2
156,422 - MPMX19_06884 0.34 +0.9
156,422 - MPMX19_06884 0.34 +1.2
156,422 - MPMX19_06884 0.34 +0.4
156,422 - MPMX19_06884 0.34 -1.0
156,431 - MPMX19_06884 0.35 -1.5
156,541 + MPMX19_06884 0.46 -0.1
156,541 + MPMX19_06884 0.46 -0.5
156,541 + MPMX19_06884 0.46 -0.1
156,541 + MPMX19_06884 0.46 -0.6
156,541 + MPMX19_06884 0.46 +2.1
156,541 + MPMX19_06884 0.46 +0.4
156,541 + MPMX19_06884 0.46 -0.5
156,541 + MPMX19_06884 0.46 -0.1
156,541 + MPMX19_06884 0.46 -1.3
156,543 + MPMX19_06884 0.46 +0.1
156,543 + MPMX19_06884 0.46 -0.6
156,543 + MPMX19_06884 0.46 -0.6
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 -2.4
156,543 + MPMX19_06884 0.46 -0.4
156,543 + MPMX19_06884 0.46 -0.0
156,543 + MPMX19_06884 0.46 -0.4
156,543 + MPMX19_06884 0.46 -1.5
156,543 + MPMX19_06884 0.46 +0.0
156,543 + MPMX19_06884 0.46 +1.9
156,543 + MPMX19_06884 0.46 -0.1
156,543 + MPMX19_06884 0.46 +0.3
156,543 + MPMX19_06884 0.46 -1.1
156,543 + MPMX19_06884 0.46 +1.1
156,543 + MPMX19_06884 0.46 +0.2
156,543 + MPMX19_06884 0.46 -1.4
156,543 + MPMX19_06884 0.46 -2.2
156,543 + MPMX19_06884 0.46 +0.8
156,543 + MPMX19_06884 0.46 +0.7
156,543 + MPMX19_06884 0.46 +0.3
156,543 + MPMX19_06884 0.46 -1.0
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 +0.3
156,543 + MPMX19_06884 0.46 -0.5
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 -1.4
156,543 + MPMX19_06884 0.46 +0.5
156,543 + MPMX19_06884 0.46 -1.6
156,543 + MPMX19_06884 0.46 -1.5
156,556 + MPMX19_06884 0.47 -1.3
156,556 + MPMX19_06884 0.47 +0.9
156,556 + MPMX19_06884 0.47 -0.7
157,429 + MPMX19_06885 0.38 -0.1
157,430 - MPMX19_06885 0.38 -2.0
157,430 - MPMX19_06885 0.38 -0.9
157,430 - MPMX19_06885 0.38 -0.6
157,519 - MPMX19_06885 0.49 -0.0
157,840 - MPMX19_06885 0.89 -1.5
157,840 - MPMX19_06885 0.89 -0.6
158,374 - MPMX19_06886 0.50 -0.3
158,374 - MPMX19_06886 0.50 +0.7
158,504 + MPMX19_06886 0.65 +0.3
158,504 + MPMX19_06886 0.65 -0.2
158,504 + MPMX19_06886 0.65 -0.0
158,508 + MPMX19_06886 0.65 +1.2
158,508 + MPMX19_06886 0.65 -1.5
158,508 + MPMX19_06886 0.65 -1.3
158,508 + MPMX19_06886 0.65 +0.5
158,508 + MPMX19_06886 0.65 -1.3
158,508 + MPMX19_06886 0.65 +0.7
158,508 + MPMX19_06886 0.65 -0.2
158,508 + MPMX19_06886 0.65 +0.1
158,509 - MPMX19_06886 0.65 -0.5
158,673 - MPMX19_06886 0.84 +0.1
158,673 - MPMX19_06886 0.84 -0.7
158,673 - MPMX19_06886 0.84 -1.7
158,673 - MPMX19_06886 0.84 +0.0
158,673 - MPMX19_06886 0.84 -0.8

Or see this region's nucleotide sequence