Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06871 and MPMX19_06872 are separated by 1 nucleotides MPMX19_06872 and MPMX19_06873 are separated by 32 nucleotides MPMX19_06873 and MPMX19_06874 are separated by 113 nucleotides MPMX19_06874 and MPMX19_06875 overlap by 8 nucleotides
MPMX19_06871: MPMX19_06871 - Long-chain-fatty-acid--CoA ligase FadD15, at 141,628 to 143,538
_06871
MPMX19_06872: MPMX19_06872 - Short-chain-enoyl-CoA hydratase, at 143,540 to 144,328
_06872
MPMX19_06873: MPMX19_06873 - F420-dependent glucose-6-phosphate dehydrogenase, at 144,361 to 145,500
_06873
MPMX19_06874: MPMX19_06874 - hypothetical protein, at 145,614 to 146,402
_06874
MPMX19_06875: MPMX19_06875 - Carnitinyl-CoA dehydratase, at 146,395 to 147,159
_06875
Position (kb)
144
145
146 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 143.460 kb on - strand at 143.460 kb on - strand at 143.460 kb on - strand at 143.691 kb on + strand, within MPMX19_06872 at 143.691 kb on + strand, within MPMX19_06872 at 143.691 kb on + strand, within MPMX19_06872 at 143.692 kb on - strand, within MPMX19_06872 at 143.692 kb on - strand, within MPMX19_06872 at 143.692 kb on - strand, within MPMX19_06872 at 143.692 kb on - strand, within MPMX19_06872 at 143.692 kb on - strand, within MPMX19_06872 at 143.844 kb on + strand, within MPMX19_06872 at 143.844 kb on + strand, within MPMX19_06872 at 143.844 kb on + strand, within MPMX19_06872 at 143.844 kb on + strand, within MPMX19_06872 at 143.845 kb on - strand, within MPMX19_06872 at 143.845 kb on - strand, within MPMX19_06872 at 143.845 kb on - strand, within MPMX19_06872 at 143.845 kb on - strand, within MPMX19_06872 at 143.845 kb on - strand, within MPMX19_06872 at 143.845 kb on - strand, within MPMX19_06872 at 144.310 kb on + strand at 144.310 kb on + strand at 144.311 kb on - strand at 144.312 kb on + strand at 144.312 kb on + strand at 144.312 kb on + strand at 144.312 kb on + strand at 144.313 kb on - strand at 144.313 kb on - strand at 144.313 kb on - strand at 144.313 kb on - strand at 144.313 kb on - strand at 144.461 kb on + strand at 144.461 kb on + strand at 144.461 kb on + strand at 144.462 kb on - strand at 144.462 kb on - strand at 144.462 kb on - strand at 144.462 kb on - strand at 144.620 kb on + strand, within MPMX19_06873 at 144.620 kb on + strand, within MPMX19_06873 at 144.671 kb on + strand, within MPMX19_06873 at 144.671 kb on + strand, within MPMX19_06873 at 144.671 kb on + strand, within MPMX19_06873 at 144.671 kb on + strand, within MPMX19_06873 at 144.671 kb on + strand, within MPMX19_06873 at 144.671 kb on + strand, within MPMX19_06873 at 144.672 kb on - strand, within MPMX19_06873 at 144.672 kb on - strand, within MPMX19_06873 at 144.672 kb on - strand, within MPMX19_06873 at 144.672 kb on - strand, within MPMX19_06873 at 144.672 kb on - strand, within MPMX19_06873 at 144.672 kb on - strand, within MPMX19_06873 at 144.672 kb on - strand, within MPMX19_06873 at 144.677 kb on + strand, within MPMX19_06873 at 144.677 kb on + strand, within MPMX19_06873 at 144.677 kb on + strand, within MPMX19_06873 at 144.677 kb on + strand, within MPMX19_06873 at 144.678 kb on - strand, within MPMX19_06873 at 144.731 kb on + strand, within MPMX19_06873 at 144.731 kb on + strand, within MPMX19_06873 at 144.731 kb on + strand, within MPMX19_06873 at 144.731 kb on + strand, within MPMX19_06873 at 144.732 kb on - strand, within MPMX19_06873 at 144.732 kb on - strand, within MPMX19_06873 at 144.752 kb on + strand, within MPMX19_06873 at 144.752 kb on + strand, within MPMX19_06873 at 144.753 kb on - strand, within MPMX19_06873 at 144.753 kb on - strand, within MPMX19_06873 at 144.753 kb on - strand, within MPMX19_06873 at 144.753 kb on - strand, within MPMX19_06873 at 144.900 kb on - strand, within MPMX19_06873 at 144.900 kb on - strand, within MPMX19_06873 at 144.900 kb on - strand, within MPMX19_06873 at 144.986 kb on + strand, within MPMX19_06873 at 145.034 kb on + strand, within MPMX19_06873 at 145.175 kb on + strand, within MPMX19_06873 at 145.175 kb on + strand, within MPMX19_06873 at 145.176 kb on - strand, within MPMX19_06873 at 145.176 kb on - strand, within MPMX19_06873 at 145.311 kb on - strand, within MPMX19_06873 at 145.316 kb on + strand, within MPMX19_06873 at 145.316 kb on + strand, within MPMX19_06873 at 145.316 kb on + strand, within MPMX19_06873 at 145.317 kb on - strand, within MPMX19_06873 at 145.317 kb on - strand, within MPMX19_06873 at 145.317 kb on - strand, within MPMX19_06873 at 145.317 kb on - strand, within MPMX19_06873 at 145.822 kb on + strand, within MPMX19_06874 at 145.822 kb on + strand, within MPMX19_06874 at 145.822 kb on + strand, within MPMX19_06874 at 145.822 kb on + strand, within MPMX19_06874 at 146.104 kb on + strand, within MPMX19_06874 at 146.104 kb on + strand, within MPMX19_06874 at 146.104 kb on + strand, within MPMX19_06874 at 146.105 kb on - strand, within MPMX19_06874
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 143,460 - +0.5 143,460 - -1.7 143,460 - -0.1 143,691 + MPMX19_06872 0.19 +1.1 143,691 + MPMX19_06872 0.19 -1.8 143,691 + MPMX19_06872 0.19 +0.2 143,692 - MPMX19_06872 0.19 -1.5 143,692 - MPMX19_06872 0.19 -0.5 143,692 - MPMX19_06872 0.19 -0.5 143,692 - MPMX19_06872 0.19 -2.4 143,692 - MPMX19_06872 0.19 +0.6 143,844 + MPMX19_06872 0.39 -0.9 143,844 + MPMX19_06872 0.39 +0.1 143,844 + MPMX19_06872 0.39 +0.8 143,844 + MPMX19_06872 0.39 -0.2 143,845 - MPMX19_06872 0.39 -0.2 143,845 - MPMX19_06872 0.39 -1.2 143,845 - MPMX19_06872 0.39 +0.6 143,845 - MPMX19_06872 0.39 -1.6 143,845 - MPMX19_06872 0.39 +0.1 143,845 - MPMX19_06872 0.39 -0.3 144,310 + -0.5 144,310 + +0.2 144,311 - +1.3 144,312 + +0.1 144,312 + -0.2 144,312 + +1.3 144,312 + -0.2 144,313 - -0.1 144,313 - +0.8 144,313 - -0.3 144,313 - -0.0 144,313 - -0.1 144,461 + -0.6 144,461 + +0.1 144,461 + -0.2 144,462 - -1.3 144,462 - -1.2 144,462 - +0.5 144,462 - +0.4 144,620 + MPMX19_06873 0.23 -0.3 144,620 + MPMX19_06873 0.23 +0.5 144,671 + MPMX19_06873 0.27 +0.6 144,671 + MPMX19_06873 0.27 -0.2 144,671 + MPMX19_06873 0.27 -0.3 144,671 + MPMX19_06873 0.27 -0.4 144,671 + MPMX19_06873 0.27 +0.6 144,671 + MPMX19_06873 0.27 -0.8 144,672 - MPMX19_06873 0.27 +1.1 144,672 - MPMX19_06873 0.27 +1.7 144,672 - MPMX19_06873 0.27 -1.6 144,672 - MPMX19_06873 0.27 -1.5 144,672 - MPMX19_06873 0.27 -0.9 144,672 - MPMX19_06873 0.27 -0.4 144,672 - MPMX19_06873 0.27 +0.6 144,677 + MPMX19_06873 0.28 +0.7 144,677 + MPMX19_06873 0.28 -1.5 144,677 + MPMX19_06873 0.28 -0.3 144,677 + MPMX19_06873 0.28 +0.7 144,678 - MPMX19_06873 0.28 -0.5 144,731 + MPMX19_06873 0.32 -1.4 144,731 + MPMX19_06873 0.32 +0.9 144,731 + MPMX19_06873 0.32 +0.2 144,731 + MPMX19_06873 0.32 +0.4 144,732 - MPMX19_06873 0.33 -1.0 144,732 - MPMX19_06873 0.33 +0.3 144,752 + MPMX19_06873 0.34 +1.7 144,752 + MPMX19_06873 0.34 -1.8 144,753 - MPMX19_06873 0.34 +1.7 144,753 - MPMX19_06873 0.34 -0.9 144,753 - MPMX19_06873 0.34 -1.5 144,753 - MPMX19_06873 0.34 +1.2 144,900 - MPMX19_06873 0.47 +0.5 144,900 - MPMX19_06873 0.47 -0.2 144,900 - MPMX19_06873 0.47 +2.1 144,986 + MPMX19_06873 0.55 +1.0 145,034 + MPMX19_06873 0.59 +0.4 145,175 + MPMX19_06873 0.71 +0.6 145,175 + MPMX19_06873 0.71 -1.9 145,176 - MPMX19_06873 0.71 -0.3 145,176 - MPMX19_06873 0.71 -0.7 145,311 - MPMX19_06873 0.83 -0.3 145,316 + MPMX19_06873 0.84 +0.1 145,316 + MPMX19_06873 0.84 -1.1 145,316 + MPMX19_06873 0.84 -1.6 145,317 - MPMX19_06873 0.84 +0.2 145,317 - MPMX19_06873 0.84 -1.1 145,317 - MPMX19_06873 0.84 +0.7 145,317 - MPMX19_06873 0.84 -0.5 145,822 + MPMX19_06874 0.26 -0.3 145,822 + MPMX19_06874 0.26 +1.3 145,822 + MPMX19_06874 0.26 +0.6 145,822 + MPMX19_06874 0.26 +1.0 146,104 + MPMX19_06874 0.62 -0.3 146,104 + MPMX19_06874 0.62 +0.7 146,104 + MPMX19_06874 0.62 +1.3 146,105 - MPMX19_06874 0.62 -0.7
Or see this region's nucleotide sequence