Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06831

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06829 and MPMX19_06830 overlap by 4 nucleotidesMPMX19_06830 and MPMX19_06831 are separated by 41 nucleotidesMPMX19_06831 and MPMX19_06832 are separated by 112 nucleotidesMPMX19_06832 and MPMX19_06833 are separated by 74 nucleotides MPMX19_06829: MPMX19_06829 - hypothetical protein, at 94,841 to 95,827 _06829 MPMX19_06830: MPMX19_06830 - Maleate isomerase, at 95,824 to 96,609 _06830 MPMX19_06831: MPMX19_06831 - putative amino-acid permease protein YxeN, at 96,651 to 97,307 _06831 MPMX19_06832: MPMX19_06832 - L-cystine transport system permease protein YecS, at 97,420 to 98,079 _06832 MPMX19_06833: MPMX19_06833 - Glutamine transport ATP-binding protein GlnQ, at 98,154 to 98,939 _06833 Position (kb) 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 96.149 kb on + strand, within MPMX19_06830at 96.149 kb on + strand, within MPMX19_06830at 96.150 kb on - strand, within MPMX19_06830at 96.182 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.754 kb on + strand, within MPMX19_06831at 96.755 kb on - strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.761 kb on - strand, within MPMX19_06831at 96.761 kb on - strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.920 kb on - strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.012 kb on + strand, within MPMX19_06831at 97.012 kb on + strand, within MPMX19_06831at 97.081 kb on + strand, within MPMX19_06831at 97.081 kb on + strand, within MPMX19_06831at 97.082 kb on - strand, within MPMX19_06831at 97.082 kb on - strand, within MPMX19_06831at 97.093 kb on + strand, within MPMX19_06831at 97.093 kb on + strand, within MPMX19_06831at 97.094 kb on - strand, within MPMX19_06831at 97.320 kb on + strandat 97.320 kb on + strandat 97.321 kb on - strandat 97.381 kb on + strandat 97.381 kb on + strandat 97.382 kb on - strandat 97.403 kb on + strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.422 kb on - strandat 97.422 kb on - strandat 97.497 kb on - strand, within MPMX19_06832at 97.497 kb on - strand, within MPMX19_06832at 97.497 kb on - strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.788 kb on - strand, within MPMX19_06832at 97.788 kb on - strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.919 kb on + strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 98.061 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
95,905 + MPMX19_06830 0.10 -0.4
95,905 + MPMX19_06830 0.10 +0.2
95,905 + MPMX19_06830 0.10 +1.1
95,905 + MPMX19_06830 0.10 -1.9
95,905 + MPMX19_06830 0.10 -1.4
95,905 + MPMX19_06830 0.10 +0.6
95,906 - MPMX19_06830 0.10 -1.2
95,906 - MPMX19_06830 0.10 -0.4
95,906 - MPMX19_06830 0.10 -1.0
95,906 - MPMX19_06830 0.10 -0.7
96,149 + MPMX19_06830 0.41 -1.3
96,149 + MPMX19_06830 0.41 +0.2
96,150 - MPMX19_06830 0.41 -0.1
96,182 + MPMX19_06830 0.46 -1.6
96,338 + MPMX19_06830 0.65 +1.3
96,338 + MPMX19_06830 0.65 +0.4
96,338 + MPMX19_06830 0.65 -2.5
96,338 + MPMX19_06830 0.65 +1.4
96,338 + MPMX19_06830 0.65 -0.0
96,338 + MPMX19_06830 0.65 -1.0
96,339 - MPMX19_06830 0.66 -0.2
96,339 - MPMX19_06830 0.66 -1.3
96,339 - MPMX19_06830 0.66 +0.7
96,458 + MPMX19_06830 0.81 +0.1
96,458 + MPMX19_06830 0.81 +0.4
96,458 + MPMX19_06830 0.81 -0.8
96,459 - MPMX19_06830 0.81 -1.3
96,459 - MPMX19_06830 0.81 +0.1
96,459 - MPMX19_06830 0.81 -2.1
96,459 - MPMX19_06830 0.81 -2.8
96,459 - MPMX19_06830 0.81 -0.1
96,459 - MPMX19_06830 0.81 +1.7
96,459 - MPMX19_06830 0.81 -0.3
96,459 - MPMX19_06830 0.81 -0.3
96,754 + MPMX19_06831 0.16 -0.9
96,755 - MPMX19_06831 0.16 +0.7
96,760 + MPMX19_06831 0.17 -0.1
96,760 + MPMX19_06831 0.17 -1.5
96,760 + MPMX19_06831 0.17 +0.7
96,760 + MPMX19_06831 0.17 -1.3
96,761 - MPMX19_06831 0.17 -0.5
96,761 - MPMX19_06831 0.17 -0.8
96,853 + MPMX19_06831 0.31 -1.1
96,853 + MPMX19_06831 0.31 -0.1
96,853 + MPMX19_06831 0.31 -0.6
96,853 + MPMX19_06831 0.31 +0.1
96,853 + MPMX19_06831 0.31 -0.3
96,853 + MPMX19_06831 0.31 +1.0
96,853 + MPMX19_06831 0.31 -0.4
96,853 + MPMX19_06831 0.31 -1.3
96,853 + MPMX19_06831 0.31 -0.3
96,853 + MPMX19_06831 0.31 +0.1
96,854 - MPMX19_06831 0.31 -1.9
96,854 - MPMX19_06831 0.31 +0.7
96,854 - MPMX19_06831 0.31 -0.6
96,854 - MPMX19_06831 0.31 -0.3
96,854 - MPMX19_06831 0.31 -0.5
96,854 - MPMX19_06831 0.31 +0.2
96,920 - MPMX19_06831 0.41 +0.2
97,003 + MPMX19_06831 0.54 +0.4
97,003 + MPMX19_06831 0.54 +0.4
97,003 + MPMX19_06831 0.54 -2.5
97,004 - MPMX19_06831 0.54 -0.3
97,004 - MPMX19_06831 0.54 -1.0
97,004 - MPMX19_06831 0.54 -0.0
97,004 - MPMX19_06831 0.54 -1.6
97,004 - MPMX19_06831 0.54 +0.2
97,004 - MPMX19_06831 0.54 -1.1
97,012 + MPMX19_06831 0.55 +0.9
97,012 + MPMX19_06831 0.55 -1.6
97,081 + MPMX19_06831 0.65 +0.2
97,081 + MPMX19_06831 0.65 -1.7
97,082 - MPMX19_06831 0.66 -1.3
97,082 - MPMX19_06831 0.66 -2.2
97,093 + MPMX19_06831 0.67 +0.9
97,093 + MPMX19_06831 0.67 +0.2
97,094 - MPMX19_06831 0.67 -0.9
97,320 + -0.6
97,320 + -0.1
97,321 - +0.2
97,381 + -0.3
97,381 + -0.7
97,382 - +1.0
97,403 + +0.6
97,404 - -1.1
97,404 - +0.7
97,404 - +0.3
97,404 - +0.5
97,422 - -1.8
97,422 - +0.4
97,497 - MPMX19_06832 0.12 -0.9
97,497 - MPMX19_06832 0.12 -0.4
97,497 - MPMX19_06832 0.12 -0.8
97,505 + MPMX19_06832 0.13 -0.4
97,505 + MPMX19_06832 0.13 -1.4
97,505 + MPMX19_06832 0.13 -0.2
97,505 + MPMX19_06832 0.13 -0.6
97,505 + MPMX19_06832 0.13 +0.2
97,505 + MPMX19_06832 0.13 -0.5
97,506 - MPMX19_06832 0.13 -0.6
97,506 - MPMX19_06832 0.13 -1.3
97,506 - MPMX19_06832 0.13 -0.3
97,506 - MPMX19_06832 0.13 -0.4
97,506 - MPMX19_06832 0.13 +0.2
97,506 - MPMX19_06832 0.13 -1.1
97,506 - MPMX19_06832 0.13 -1.6
97,788 - MPMX19_06832 0.56 -0.6
97,788 - MPMX19_06832 0.56 +0.7
97,868 + MPMX19_06832 0.68 -0.7
97,868 + MPMX19_06832 0.68 -0.4
97,868 + MPMX19_06832 0.68 +0.3
97,869 - MPMX19_06832 0.68 +1.9
97,869 - MPMX19_06832 0.68 -1.3
97,869 - MPMX19_06832 0.68 +0.2
97,869 - MPMX19_06832 0.68 -0.8
97,919 + MPMX19_06832 0.76 -1.5
97,920 - MPMX19_06832 0.76 +0.8
97,920 - MPMX19_06832 0.76 -0.3
97,920 - MPMX19_06832 0.76 -0.1
98,061 - +0.3

Or see this region's nucleotide sequence