Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06794 and MPMX19_06795 are separated by 28 nucleotides MPMX19_06795 and MPMX19_06796 are separated by 20 nucleotides MPMX19_06796 and MPMX19_06797 are separated by 14 nucleotides
MPMX19_06794: MPMX19_06794 - Glutarate-semialdehyde dehydrogenase, at 59,753 to 61,207
_06794
MPMX19_06795: MPMX19_06795 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 61,236 to 62,060
_06795
MPMX19_06796: MPMX19_06796 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 62,081 to 62,884
_06796
MPMX19_06797: MPMX19_06797 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 62,899 to 63,288
_06797
Position (kb) 61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 60.300 kb on + strand, within MPMX19_06794 at 60.300 kb on + strand, within MPMX19_06794 at 60.300 kb on + strand, within MPMX19_06794 at 60.300 kb on + strand, within MPMX19_06794 at 60.300 kb on + strand, within MPMX19_06794 at 60.300 kb on + strand, within MPMX19_06794 at 60.301 kb on - strand, within MPMX19_06794 at 60.301 kb on - strand, within MPMX19_06794 at 60.301 kb on - strand, within MPMX19_06794 at 60.301 kb on - strand, within MPMX19_06794 at 60.301 kb on - strand, within MPMX19_06794 at 60.301 kb on - strand, within MPMX19_06794 at 60.361 kb on - strand, within MPMX19_06794 at 60.825 kb on + strand, within MPMX19_06794 at 60.825 kb on + strand, within MPMX19_06794 at 60.825 kb on + strand, within MPMX19_06794 at 60.825 kb on + strand, within MPMX19_06794 at 60.826 kb on - strand, within MPMX19_06794 at 60.826 kb on - strand, within MPMX19_06794 at 60.826 kb on - strand, within MPMX19_06794 at 60.862 kb on - strand, within MPMX19_06794 at 60.862 kb on - strand, within MPMX19_06794 at 61.215 kb on - strand at 61.241 kb on - strand at 61.387 kb on + strand, within MPMX19_06795 at 61.388 kb on - strand, within MPMX19_06795 at 61.661 kb on + strand, within MPMX19_06795 at 61.975 kb on + strand, within MPMX19_06795 at 61.975 kb on + strand, within MPMX19_06795 at 61.976 kb on - strand, within MPMX19_06795 at 61.976 kb on - strand, within MPMX19_06795 at 62.082 kb on + strand at 62.083 kb on - strand at 62.083 kb on - strand at 62.083 kb on - strand at 62.118 kb on + strand at 62.308 kb on - strand, within MPMX19_06796 at 62.308 kb on - strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.912 kb on + strand at 62.912 kb on + strand at 62.912 kb on + strand at 62.913 kb on - strand at 62.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 60,300 + MPMX19_06794 0.38 -0.5 60,300 + MPMX19_06794 0.38 +0.3 60,300 + MPMX19_06794 0.38 +0.1 60,300 + MPMX19_06794 0.38 -1.1 60,300 + MPMX19_06794 0.38 -0.2 60,300 + MPMX19_06794 0.38 -0.3 60,301 - MPMX19_06794 0.38 -1.6 60,301 - MPMX19_06794 0.38 -2.1 60,301 - MPMX19_06794 0.38 +0.3 60,301 - MPMX19_06794 0.38 -0.2 60,301 - MPMX19_06794 0.38 +1.0 60,301 - MPMX19_06794 0.38 -0.8 60,361 - MPMX19_06794 0.42 -0.2 60,825 + MPMX19_06794 0.74 -0.9 60,825 + MPMX19_06794 0.74 -0.4 60,825 + MPMX19_06794 0.74 -1.3 60,825 + MPMX19_06794 0.74 -1.3 60,826 - MPMX19_06794 0.74 -0.5 60,826 - MPMX19_06794 0.74 -0.2 60,826 - MPMX19_06794 0.74 +0.1 60,862 - MPMX19_06794 0.76 +0.4 60,862 - MPMX19_06794 0.76 -3.4 61,215 - +1.0 61,241 - -1.0 61,387 + MPMX19_06795 0.18 +1.1 61,388 - MPMX19_06795 0.18 -0.3 61,661 + MPMX19_06795 0.52 -0.3 61,975 + MPMX19_06795 0.90 +0.8 61,975 + MPMX19_06795 0.90 -0.5 61,976 - MPMX19_06795 0.90 -0.2 61,976 - MPMX19_06795 0.90 -0.3 62,082 + -0.3 62,083 - -0.9 62,083 - -1.2 62,083 - -1.7 62,118 + -1.3 62,308 - MPMX19_06796 0.28 -0.1 62,308 - MPMX19_06796 0.28 +0.1 62,487 + MPMX19_06796 0.50 +0.6 62,487 + MPMX19_06796 0.50 -0.6 62,487 + MPMX19_06796 0.50 -1.2 62,487 + MPMX19_06796 0.50 -0.4 62,487 + MPMX19_06796 0.50 +0.0 62,488 - MPMX19_06796 0.51 -1.0 62,488 - MPMX19_06796 0.51 +0.7 62,488 - MPMX19_06796 0.51 -0.5 62,488 - MPMX19_06796 0.51 -0.9 62,488 - MPMX19_06796 0.51 -1.5 62,488 - MPMX19_06796 0.51 -1.5 62,488 - MPMX19_06796 0.51 -1.6 62,488 - MPMX19_06796 0.51 -2.5 62,488 - MPMX19_06796 0.51 -0.7 62,488 - MPMX19_06796 0.51 -0.8 62,766 + MPMX19_06796 0.85 +1.1 62,766 + MPMX19_06796 0.85 -0.5 62,766 + MPMX19_06796 0.85 +1.1 62,766 + MPMX19_06796 0.85 -1.5 62,766 + MPMX19_06796 0.85 +1.0 62,766 + MPMX19_06796 0.85 -1.9 62,767 - MPMX19_06796 0.85 -0.6 62,767 - MPMX19_06796 0.85 -0.1 62,767 - MPMX19_06796 0.85 -1.5 62,767 - MPMX19_06796 0.85 -2.0 62,767 - MPMX19_06796 0.85 -0.7 62,912 + +0.5 62,912 + -0.1 62,912 + -0.6 62,913 - -0.8 62,913 - -1.6
Or see this region's nucleotide sequence