Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06788 and MPMX19_06789 are separated by 40 nucleotides MPMX19_06789 and MPMX19_06790 are separated by 53 nucleotides
MPMX19_06788: MPMX19_06788 - putative protein YiaX1, at 53,322 to 54,305
_06788
MPMX19_06789: MPMX19_06789 - Octopine catabolism/uptake operon regulatory protein OccR, at 54,346 to 55,242
_06789
MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621
_06790
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 54.066 kb on + strand, within MPMX19_06788 at 54.067 kb on - strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.178 kb on - strand, within MPMX19_06788 at 54.280 kb on + strand at 54.310 kb on + strand at 54.311 kb on - strand at 54.311 kb on - strand at 54.311 kb on - strand at 54.312 kb on + strand at 54.312 kb on + strand at 54.312 kb on + strand at 54.313 kb on - strand at 54.313 kb on - strand at 54.988 kb on + strand, within MPMX19_06789 at 54.988 kb on + strand, within MPMX19_06789 at 54.988 kb on + strand, within MPMX19_06789 at 54.989 kb on - strand, within MPMX19_06789 at 54.989 kb on - strand, within MPMX19_06789 at 55.519 kb on + strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 54,066 + MPMX19_06788 0.76 -0.6 54,067 - MPMX19_06788 0.76 -0.7 54,177 + MPMX19_06788 0.87 -0.2 54,177 + MPMX19_06788 0.87 -0.2 54,177 + MPMX19_06788 0.87 +1.7 54,177 + MPMX19_06788 0.87 -0.2 54,177 + MPMX19_06788 0.87 +0.5 54,178 - MPMX19_06788 0.87 -2.1 54,280 + -1.2 54,310 + -0.9 54,311 - -1.1 54,311 - -1.3 54,311 - -2.3 54,312 + -0.9 54,312 + +0.9 54,312 + -1.4 54,313 - -0.1 54,313 - -0.6 54,988 + MPMX19_06789 0.72 +1.0 54,988 + MPMX19_06789 0.72 -1.0 54,988 + MPMX19_06789 0.72 -1.3 54,989 - MPMX19_06789 0.72 -0.5 54,989 - MPMX19_06789 0.72 +1.0 55,519 + MPMX19_06790 0.17 -1.9 55,520 - MPMX19_06790 0.17 +0.1 55,520 - MPMX19_06790 0.17 -1.4 55,520 - MPMX19_06790 0.17 -3.1
Or see this region's nucleotide sequence