Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06782

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06780 and MPMX19_06781 are separated by 107 nucleotidesMPMX19_06781 and MPMX19_06782 are separated by 52 nucleotidesMPMX19_06782 and MPMX19_06783 are separated by 131 nucleotidesMPMX19_06783 and MPMX19_06784 are separated by 18 nucleotides MPMX19_06780: MPMX19_06780 - Potassium channel, at 44,890 to 45,465 _06780 MPMX19_06781: MPMX19_06781 - hypothetical protein, at 45,573 to 45,803 _06781 MPMX19_06782: MPMX19_06782 - Pyruvate dehydrogenase complex repressor, at 45,856 to 46,659 _06782 MPMX19_06783: MPMX19_06783 - 5-keto-D-gluconate 5-reductase, at 46,791 to 47,555 _06783 MPMX19_06784: MPMX19_06784 - D-galactonate dehydratase, at 47,574 to 48,773 _06784 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.025 kb on + strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.026 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.056 kb on - strand, within MPMX19_06780at 45.211 kb on + strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.212 kb on - strand, within MPMX19_06780at 45.245 kb on - strand, within MPMX19_06780at 45.245 kb on - strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.346 kb on + strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.347 kb on - strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.400 kb on + strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.401 kb on - strand, within MPMX19_06780at 45.402 kb on + strand, within MPMX19_06780at 45.403 kb on - strand, within MPMX19_06780at 45.541 kb on + strandat 45.541 kb on + strandat 45.541 kb on + strandat 45.541 kb on + strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.542 kb on - strandat 45.845 kb on + strandat 45.845 kb on + strandat 45.846 kb on - strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.857 kb on + strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.858 kb on - strandat 45.963 kb on - strand, within MPMX19_06782at 46.795 kb on + strandat 46.795 kb on + strandat 46.795 kb on + strandat 46.795 kb on + strandat 46.795 kb on + strandat 46.795 kb on + strandat 46.796 kb on - strandat 46.987 kb on + strand, within MPMX19_06783at 46.988 kb on - strand, within MPMX19_06783at 46.988 kb on - strand, within MPMX19_06783at 46.988 kb on - strand, within MPMX19_06783at 47.381 kb on + strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.382 kb on - strand, within MPMX19_06783at 47.383 kb on + strand, within MPMX19_06783at 47.384 kb on - strand, within MPMX19_06783

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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45,025 + MPMX19_06780 0.23 -1.1
45,025 + MPMX19_06780 0.23 -1.4
45,025 + MPMX19_06780 0.23 -0.6
45,025 + MPMX19_06780 0.23 -0.4
45,025 + MPMX19_06780 0.23 -0.9
45,025 + MPMX19_06780 0.23 +1.1
45,025 + MPMX19_06780 0.23 -0.3
45,025 + MPMX19_06780 0.23 -0.8
45,025 + MPMX19_06780 0.23 -0.8
45,025 + MPMX19_06780 0.23 +1.6
45,025 + MPMX19_06780 0.23 +0.5
45,025 + MPMX19_06780 0.23 -0.1
45,026 - MPMX19_06780 0.24 -0.4
45,026 - MPMX19_06780 0.24 +0.4
45,026 - MPMX19_06780 0.24 +0.4
45,026 - MPMX19_06780 0.24 -1.7
45,026 - MPMX19_06780 0.24 +0.1
45,026 - MPMX19_06780 0.24 +0.5
45,026 - MPMX19_06780 0.24 +0.4
45,026 - MPMX19_06780 0.24 -1.1
45,026 - MPMX19_06780 0.24 -1.7
45,026 - MPMX19_06780 0.24 -0.8
45,026 - MPMX19_06780 0.24 -0.8
45,056 - MPMX19_06780 0.29 +0.0
45,056 - MPMX19_06780 0.29 -1.9
45,056 - MPMX19_06780 0.29 -1.4
45,211 + MPMX19_06780 0.56 -1.5
45,212 - MPMX19_06780 0.56 +0.5
45,212 - MPMX19_06780 0.56 -1.6
45,212 - MPMX19_06780 0.56 -1.9
45,245 - MPMX19_06780 0.62 -0.3
45,245 - MPMX19_06780 0.62 -0.2
45,346 + MPMX19_06780 0.79 -0.0
45,346 + MPMX19_06780 0.79 +0.4
45,346 + MPMX19_06780 0.79 -0.6
45,347 - MPMX19_06780 0.79 +0.1
45,347 - MPMX19_06780 0.79 -0.7
45,347 - MPMX19_06780 0.79 -0.5
45,347 - MPMX19_06780 0.79 -1.2
45,400 + MPMX19_06780 0.89 -1.3
45,400 + MPMX19_06780 0.89 +0.2
45,400 + MPMX19_06780 0.89 +0.4
45,400 + MPMX19_06780 0.89 +0.7
45,400 + MPMX19_06780 0.89 -1.5
45,400 + MPMX19_06780 0.89 -2.2
45,400 + MPMX19_06780 0.89 -0.9
45,400 + MPMX19_06780 0.89 +0.3
45,400 + MPMX19_06780 0.89 -0.9
45,400 + MPMX19_06780 0.89 +0.1
45,400 + MPMX19_06780 0.89 -0.9
45,400 + MPMX19_06780 0.89 -0.5
45,400 + MPMX19_06780 0.89 -0.2
45,401 - MPMX19_06780 0.89 -0.1
45,401 - MPMX19_06780 0.89 -1.6
45,401 - MPMX19_06780 0.89 -0.9
45,401 - MPMX19_06780 0.89 +0.7
45,401 - MPMX19_06780 0.89 +0.1
45,401 - MPMX19_06780 0.89 -1.0
45,401 - MPMX19_06780 0.89 -0.6
45,401 - MPMX19_06780 0.89 +2.2
45,401 - MPMX19_06780 0.89 +0.7
45,402 + MPMX19_06780 0.89 +0.9
45,403 - MPMX19_06780 0.89 +0.1
45,541 + -1.0
45,541 + -0.2
45,541 + -0.9
45,541 + -1.9
45,542 - -1.3
45,542 - -1.3
45,542 - +0.1
45,542 - -0.6
45,542 - -0.9
45,542 - +0.0
45,542 - +0.4
45,542 - +1.4
45,542 - -0.1
45,845 + -0.0
45,845 + -2.1
45,846 - -0.2
45,857 + -0.3
45,857 + +0.1
45,857 + -1.7
45,857 + -0.1
45,857 + -0.6
45,857 + -0.5
45,857 + -0.9
45,857 + -0.5
45,858 - +0.5
45,858 - +0.1
45,858 - +1.2
45,858 - -1.3
45,858 - -0.3
45,963 - MPMX19_06782 0.13 -0.1
46,795 + -1.3
46,795 + -0.5
46,795 + -0.0
46,795 + -2.1
46,795 + -0.3
46,795 + -0.2
46,796 - -0.1
46,987 + MPMX19_06783 0.26 +0.9
46,988 - MPMX19_06783 0.26 -1.0
46,988 - MPMX19_06783 0.26 -1.3
46,988 - MPMX19_06783 0.26 -0.1
47,381 + MPMX19_06783 0.77 -0.5
47,382 - MPMX19_06783 0.77 -1.5
47,382 - MPMX19_06783 0.77 +0.7
47,382 - MPMX19_06783 0.77 +0.3
47,382 - MPMX19_06783 0.77 +0.5
47,382 - MPMX19_06783 0.77 -0.6
47,383 + MPMX19_06783 0.77 -1.4
47,384 - MPMX19_06783 0.78 -0.8

Or see this region's nucleotide sequence