Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06768

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06767 and MPMX19_06768 are separated by 80 nucleotidesMPMX19_06768 and MPMX19_06769 overlap by 4 nucleotidesMPMX19_06769 and MPMX19_06770 are separated by 14 nucleotides MPMX19_06767: MPMX19_06767 - hypothetical protein, at 33,184 to 34,701 _06767 MPMX19_06768: MPMX19_06768 - hypothetical protein, at 34,782 to 35,804 _06768 MPMX19_06769: MPMX19_06769 - hypothetical protein, at 35,801 to 36,781 _06769 MPMX19_06770: MPMX19_06770 - NAD-dependent glycerol dehydrogenase, at 36,796 to 37,614 _06770 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 33.794 kb on - strand, within MPMX19_06767at 33.811 kb on + strand, within MPMX19_06767at 33.812 kb on - strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.839 kb on - strand, within MPMX19_06767at 33.839 kb on - strand, within MPMX19_06767at 34.252 kb on + strand, within MPMX19_06767at 34.252 kb on + strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.308 kb on + strand, within MPMX19_06767at 34.903 kb on - strand, within MPMX19_06768at 34.917 kb on + strand, within MPMX19_06768at 35.034 kb on + strand, within MPMX19_06768at 35.035 kb on - strand, within MPMX19_06768at 35.035 kb on - strand, within MPMX19_06768at 35.116 kb on - strand, within MPMX19_06768at 35.277 kb on + strand, within MPMX19_06768at 35.277 kb on + strand, within MPMX19_06768at 35.277 kb on + strand, within MPMX19_06768at 35.278 kb on - strand, within MPMX19_06768at 35.784 kb on + strandat 35.784 kb on + strandat 35.785 kb on - strandat 35.785 kb on - strandat 35.910 kb on - strand, within MPMX19_06769at 35.963 kb on + strand, within MPMX19_06769at 35.963 kb on + strand, within MPMX19_06769at 35.964 kb on - strand, within MPMX19_06769at 36.377 kb on + strand, within MPMX19_06769at 36.378 kb on - strand, within MPMX19_06769at 36.378 kb on - strand, within MPMX19_06769at 36.398 kb on + strand, within MPMX19_06769at 36.398 kb on + strand, within MPMX19_06769at 36.398 kb on + strand, within MPMX19_06769at 36.398 kb on + strand, within MPMX19_06769at 36.399 kb on - strand, within MPMX19_06769at 36.399 kb on - strand, within MPMX19_06769at 36.399 kb on - strand, within MPMX19_06769at 36.399 kb on - strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.537 kb on - strand, within MPMX19_06769at 36.537 kb on - strand, within MPMX19_06769at 36.579 kb on - strand, within MPMX19_06769at 36.641 kb on + strand, within MPMX19_06769at 36.642 kb on - strand, within MPMX19_06769

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
33,794 - MPMX19_06767 0.40 +0.7
33,811 + MPMX19_06767 0.41 +0.8
33,812 - MPMX19_06767 0.41 +0.7
33,838 + MPMX19_06767 0.43 -2.1
33,838 + MPMX19_06767 0.43 +1.4
33,838 + MPMX19_06767 0.43 -0.5
33,838 + MPMX19_06767 0.43 -1.1
33,839 - MPMX19_06767 0.43 -0.2
33,839 - MPMX19_06767 0.43 +0.1
34,252 + MPMX19_06767 0.70 +0.3
34,252 + MPMX19_06767 0.70 -0.3
34,253 - MPMX19_06767 0.70 +0.5
34,253 - MPMX19_06767 0.70 -2.2
34,253 - MPMX19_06767 0.70 +0.7
34,253 - MPMX19_06767 0.70 -0.1
34,253 - MPMX19_06767 0.70 -2.3
34,308 + MPMX19_06767 0.74 -0.9
34,903 - MPMX19_06768 0.12 -0.3
34,917 + MPMX19_06768 0.13 -0.3
35,034 + MPMX19_06768 0.25 -2.1
35,035 - MPMX19_06768 0.25 -2.5
35,035 - MPMX19_06768 0.25 +0.5
35,116 - MPMX19_06768 0.33 -1.4
35,277 + MPMX19_06768 0.48 +0.4
35,277 + MPMX19_06768 0.48 -0.5
35,277 + MPMX19_06768 0.48 -1.3
35,278 - MPMX19_06768 0.48 -0.3
35,784 + +0.1
35,784 + +0.2
35,785 - -0.0
35,785 - -0.1
35,910 - MPMX19_06769 0.11 +0.6
35,963 + MPMX19_06769 0.17 +0.5
35,963 + MPMX19_06769 0.17 +0.2
35,964 - MPMX19_06769 0.17 +0.1
36,377 + MPMX19_06769 0.59 -0.9
36,378 - MPMX19_06769 0.59 +0.2
36,378 - MPMX19_06769 0.59 +0.7
36,398 + MPMX19_06769 0.61 -0.9
36,398 + MPMX19_06769 0.61 +2.6
36,398 + MPMX19_06769 0.61 +0.3
36,398 + MPMX19_06769 0.61 -1.2
36,399 - MPMX19_06769 0.61 -0.5
36,399 - MPMX19_06769 0.61 -1.2
36,399 - MPMX19_06769 0.61 -2.5
36,399 - MPMX19_06769 0.61 -0.1
36,536 + MPMX19_06769 0.75 -1.3
36,536 + MPMX19_06769 0.75 -1.4
36,536 + MPMX19_06769 0.75 -1.2
36,536 + MPMX19_06769 0.75 -0.4
36,536 + MPMX19_06769 0.75 -1.8
36,536 + MPMX19_06769 0.75 +0.7
36,537 - MPMX19_06769 0.75 -0.0
36,537 - MPMX19_06769 0.75 -0.5
36,579 - MPMX19_06769 0.79 +1.7
36,641 + MPMX19_06769 0.86 -0.8
36,642 - MPMX19_06769 0.86 -0.2

Or see this region's nucleotide sequence