Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06698

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06696 and MPMX19_06697 are separated by 154 nucleotidesMPMX19_06697 and MPMX19_06698 are separated by 11 nucleotidesMPMX19_06698 and MPMX19_06699 are separated by 12 nucleotidesMPMX19_06699 and MPMX19_06700 are separated by 10 nucleotides MPMX19_06696: MPMX19_06696 - hypothetical protein, at 266,363 to 266,851 _06696 MPMX19_06697: MPMX19_06697 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 267,006 to 267,548 _06697 MPMX19_06698: MPMX19_06698 - hypothetical protein, at 267,560 to 267,949 _06698 MPMX19_06699: MPMX19_06699 - Nickel/cobalt efflux system RcnA, at 267,962 to 268,831 _06699 MPMX19_06700: MPMX19_06700 - Copper-sensing transcriptional repressor RicR, at 268,842 to 269,111 _06700 Position (kb) 267 268Strain fitness (log2 ratio) -2 -1 0 1at 266.899 kb on + strandat 266.899 kb on + strandat 266.899 kb on + strandat 266.900 kb on - strandat 266.984 kb on + strandat 266.984 kb on + strandat 266.984 kb on + strandat 267.555 kb on - strandat 267.561 kb on + strandat 267.561 kb on + strandat 267.561 kb on + strandat 267.562 kb on - strandat 267.562 kb on - strandat 267.774 kb on + strand, within MPMX19_06698at 267.774 kb on + strand, within MPMX19_06698at 267.775 kb on - strand, within MPMX19_06698at 267.775 kb on - strand, within MPMX19_06698at 267.775 kb on - strand, within MPMX19_06698at 267.825 kb on + strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.826 kb on - strand, within MPMX19_06698at 267.891 kb on + strand, within MPMX19_06698at 267.891 kb on + strand, within MPMX19_06698at 267.891 kb on + strand, within MPMX19_06698at 267.891 kb on + strand, within MPMX19_06698at 267.891 kb on + strand, within MPMX19_06698at 267.891 kb on + strand, within MPMX19_06698at 267.891 kb on + strand, within MPMX19_06698at 267.892 kb on - strand, within MPMX19_06698at 267.892 kb on - strand, within MPMX19_06698at 267.892 kb on - strand, within MPMX19_06698at 267.892 kb on - strand, within MPMX19_06698at 267.892 kb on - strand, within MPMX19_06698at 267.892 kb on - strand, within MPMX19_06698at 267.892 kb on - strand, within MPMX19_06698at 267.963 kb on + strandat 267.963 kb on + strandat 268.014 kb on + strandat 268.014 kb on + strandat 268.014 kb on + strandat 268.015 kb on - strandat 268.047 kb on + strandat 268.047 kb on + strandat 268.047 kb on + strandat 268.047 kb on + strandat 268.047 kb on + strandat 268.047 kb on + strandat 268.047 kb on + strandat 268.047 kb on + strandat 268.047 kb on + strandat 268.048 kb on - strandat 268.048 kb on - strandat 268.048 kb on - strandat 268.048 kb on - strandat 268.048 kb on - strandat 268.048 kb on - strandat 268.048 kb on - strandat 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.083 kb on + strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.084 kb on - strand, within MPMX19_06699at 268.560 kb on + strand, within MPMX19_06699at 268.560 kb on + strand, within MPMX19_06699at 268.560 kb on + strand, within MPMX19_06699at 268.560 kb on + strand, within MPMX19_06699at 268.560 kb on + strand, within MPMX19_06699at 268.560 kb on + strand, within MPMX19_06699at 268.561 kb on - strand, within MPMX19_06699at 268.561 kb on - strand, within MPMX19_06699at 268.561 kb on - strand, within MPMX19_06699at 268.843 kb on + strandat 268.843 kb on + strandat 268.843 kb on + strandat 268.843 kb on + strandat 268.843 kb on + strandat 268.844 kb on - strandat 268.844 kb on - strandat 268.844 kb on - strandat 268.844 kb on - strandat 268.844 kb on - strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.849 kb on + strandat 268.850 kb on - strandat 268.850 kb on - strandat 268.850 kb on - strandat 268.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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266,899 + -1.2
266,899 + -1.3
266,899 + -1.2
266,900 - -0.8
266,984 + -0.0
266,984 + +0.1
266,984 + +0.3
267,555 - -0.5
267,561 + +0.8
267,561 + +0.0
267,561 + -0.9
267,562 - -0.1
267,562 - +1.2
267,774 + MPMX19_06698 0.55 -0.8
267,774 + MPMX19_06698 0.55 -1.9
267,775 - MPMX19_06698 0.55 -0.5
267,775 - MPMX19_06698 0.55 -1.3
267,775 - MPMX19_06698 0.55 -0.8
267,825 + MPMX19_06698 0.68 -0.0
267,826 - MPMX19_06698 0.68 +0.2
267,826 - MPMX19_06698 0.68 +1.3
267,826 - MPMX19_06698 0.68 +1.0
267,826 - MPMX19_06698 0.68 -1.4
267,826 - MPMX19_06698 0.68 -0.2
267,891 + MPMX19_06698 0.85 -0.3
267,891 + MPMX19_06698 0.85 -0.5
267,891 + MPMX19_06698 0.85 +1.1
267,891 + MPMX19_06698 0.85 -0.6
267,891 + MPMX19_06698 0.85 -1.5
267,891 + MPMX19_06698 0.85 -0.9
267,891 + MPMX19_06698 0.85 +0.1
267,892 - MPMX19_06698 0.85 -1.8
267,892 - MPMX19_06698 0.85 -0.4
267,892 - MPMX19_06698 0.85 +0.0
267,892 - MPMX19_06698 0.85 -0.9
267,892 - MPMX19_06698 0.85 +0.3
267,892 - MPMX19_06698 0.85 +0.4
267,892 - MPMX19_06698 0.85 +0.3
267,963 + -0.3
267,963 + +0.3
268,014 + -0.2
268,014 + +0.7
268,014 + +0.1
268,015 - +0.4
268,047 + +0.0
268,047 + -0.5
268,047 + +0.1
268,047 + -0.3
268,047 + -0.4
268,047 + -1.9
268,047 + -1.5
268,047 + +0.0
268,047 + -0.9
268,048 - -0.1
268,048 - -2.0
268,048 - -0.7
268,048 - -1.0
268,048 - -0.6
268,048 - -1.5
268,048 - -1.5
268,083 + MPMX19_06699 0.14 +0.7
268,083 + MPMX19_06699 0.14 +0.1
268,083 + MPMX19_06699 0.14 -1.9
268,083 + MPMX19_06699 0.14 -0.4
268,083 + MPMX19_06699 0.14 -0.2
268,083 + MPMX19_06699 0.14 +0.5
268,083 + MPMX19_06699 0.14 -0.7
268,083 + MPMX19_06699 0.14 -0.1
268,083 + MPMX19_06699 0.14 -0.0
268,083 + MPMX19_06699 0.14 -0.4
268,083 + MPMX19_06699 0.14 -0.9
268,084 - MPMX19_06699 0.14 +1.7
268,084 - MPMX19_06699 0.14 -0.9
268,084 - MPMX19_06699 0.14 +0.6
268,084 - MPMX19_06699 0.14 -1.6
268,084 - MPMX19_06699 0.14 -1.4
268,084 - MPMX19_06699 0.14 -0.0
268,084 - MPMX19_06699 0.14 -1.9
268,084 - MPMX19_06699 0.14 -1.4
268,084 - MPMX19_06699 0.14 -1.5
268,084 - MPMX19_06699 0.14 +0.7
268,084 - MPMX19_06699 0.14 -0.3
268,084 - MPMX19_06699 0.14 -0.6
268,560 + MPMX19_06699 0.69 +1.1
268,560 + MPMX19_06699 0.69 -0.8
268,560 + MPMX19_06699 0.69 +0.7
268,560 + MPMX19_06699 0.69 -0.8
268,560 + MPMX19_06699 0.69 +0.7
268,560 + MPMX19_06699 0.69 +0.9
268,561 - MPMX19_06699 0.69 +0.2
268,561 - MPMX19_06699 0.69 +0.5
268,561 - MPMX19_06699 0.69 -0.1
268,843 + -0.1
268,843 + +0.9
268,843 + -0.3
268,843 + -0.3
268,843 + -0.1
268,844 - -2.4
268,844 - +0.0
268,844 - -1.0
268,844 - +0.9
268,844 - -1.3
268,849 + -0.8
268,849 + -0.5
268,849 + -1.4
268,849 + -1.2
268,849 + -2.7
268,849 + -1.5
268,849 + -0.2
268,849 + +0.5
268,849 + +0.5
268,849 + -1.8
268,849 + -1.5
268,849 + -0.3
268,849 + -2.6
268,850 - -0.2
268,850 - -1.3
268,850 - +0.2
268,850 - -1.4

Or see this region's nucleotide sequence