Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06673 and MPMX19_06674 are separated by 602 nucleotides MPMX19_06674 and MPMX19_06675 are separated by 320 nucleotides
MPMX19_06673: MPMX19_06673 - hypothetical protein, at 237,150 to 237,242
_06673
MPMX19_06674: MPMX19_06674 - hypothetical protein, at 237,845 to 238,279
_06674
MPMX19_06675: MPMX19_06675 - hypothetical protein, at 238,600 to 239,892
_06675
Position (kb) 237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 236.851 kb on + strand at 236.851 kb on + strand at 236.851 kb on + strand at 236.851 kb on + strand at 236.852 kb on - strand at 236.852 kb on - strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.045 kb on + strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.046 kb on - strand at 237.090 kb on + strand at 237.091 kb on - strand at 237.094 kb on + strand at 237.094 kb on + strand at 237.095 kb on - strand at 237.112 kb on - strand at 237.339 kb on + strand at 237.339 kb on + strand at 237.339 kb on + strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.372 kb on + strand at 237.384 kb on + strand at 237.385 kb on - strand at 237.385 kb on - strand at 237.385 kb on - strand at 237.432 kb on + strand at 237.432 kb on + strand at 237.507 kb on + strand at 237.507 kb on + strand at 237.507 kb on + strand at 237.508 kb on - strand at 237.508 kb on - strand at 237.508 kb on - strand at 237.508 kb on - strand at 237.508 kb on - strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.517 kb on + strand at 237.518 kb on - strand at 237.518 kb on - strand at 237.518 kb on - strand at 237.518 kb on - strand at 237.518 kb on - strand at 237.518 kb on - strand at 237.686 kb on + strand at 237.687 kb on - strand at 237.782 kb on + strand at 237.782 kb on + strand at 237.782 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.277 kb on + strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.278 kb on - strand at 238.355 kb on + strand at 238.355 kb on + strand at 238.355 kb on + strand at 238.363 kb on + strand at 238.363 kb on + strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.364 kb on - strand at 238.520 kb on + strand at 238.521 kb on - strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.643 kb on + strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.644 kb on - strand at 238.645 kb on - strand at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.786 kb on + strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.787 kb on - strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 238.990 kb on + strand, within MPMX19_06675 at 239.011 kb on + strand, within MPMX19_06675 at 239.011 kb on + strand, within MPMX19_06675 at 239.012 kb on - strand, within MPMX19_06675 at 239.012 kb on - strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.038 kb on + strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.039 kb on - strand, within MPMX19_06675 at 239.149 kb on + strand, within MPMX19_06675 at 239.150 kb on - strand, within MPMX19_06675 at 239.266 kb on + strand, within MPMX19_06675 at 239.275 kb on + strand, within MPMX19_06675 at 239.275 kb on + strand, within MPMX19_06675 at 239.276 kb on - strand, within MPMX19_06675 at 239.276 kb on - strand, within MPMX19_06675
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 236,851 + -0.5 236,851 + -0.5 236,851 + +0.5 236,851 + +0.2 236,852 - -1.1 236,852 - +0.8 237,045 + +0.1 237,045 + +0.3 237,045 + +0.5 237,045 + -1.0 237,045 + -1.1 237,045 + -0.1 237,045 + -0.5 237,045 + +0.5 237,045 + -0.4 237,045 + -0.2 237,045 + +0.6 237,045 + -0.6 237,045 + -0.4 237,045 + +0.3 237,045 + -1.8 237,045 + +1.0 237,045 + -1.6 237,045 + +0.7 237,045 + -1.6 237,045 + -0.5 237,046 - +0.1 237,046 - +1.1 237,046 - -0.8 237,046 - +0.3 237,046 - +0.1 237,046 - -0.3 237,046 - -0.3 237,046 - +0.7 237,046 - -2.4 237,046 - -2.8 237,046 - -0.6 237,046 - +2.1 237,046 - -0.9 237,046 - -1.7 237,046 - +0.7 237,046 - -0.5 237,046 - +0.5 237,046 - -2.2 237,046 - +0.5 237,046 - -1.3 237,090 + +0.5 237,091 - -0.2 237,094 + +0.1 237,094 + -0.6 237,095 - -0.9 237,112 - -0.3 237,339 + -0.3 237,339 + +1.5 237,339 + -0.2 237,340 - +1.0 237,340 - -2.2 237,340 - +0.4 237,340 - +1.2 237,340 - +0.8 237,340 - +0.0 237,340 - +0.2 237,340 - -1.0 237,372 + -1.8 237,384 + -0.2 237,385 - +0.8 237,385 - -0.4 237,385 - +0.4 237,432 + +1.5 237,432 + +1.0 237,507 + -2.5 237,507 + -0.4 237,507 + -0.3 237,508 - -0.0 237,508 - +0.1 237,508 - -1.0 237,508 - +0.8 237,508 - +0.9 237,517 + -0.1 237,517 + -0.3 237,517 + +1.3 237,517 + -1.1 237,517 + -0.4 237,517 + -0.6 237,517 + -0.2 237,517 + +0.7 237,517 + -1.0 237,517 + +0.1 237,518 - -0.6 237,518 - -0.6 237,518 - +0.9 237,518 - +0.2 237,518 - +1.7 237,518 - +0.0 237,686 + -1.0 237,687 - +0.1 237,782 + -0.2 237,782 + +0.7 237,782 + -0.3 238,277 + -1.2 238,277 + -1.0 238,277 + -0.4 238,277 + -0.6 238,278 - +0.4 238,278 - -0.3 238,278 - -0.8 238,278 - -0.0 238,355 + -0.1 238,355 + -0.9 238,355 + -0.6 238,363 + +0.7 238,363 + +0.7 238,364 - -0.1 238,364 - +1.4 238,364 - -0.5 238,364 - +0.5 238,364 - -0.6 238,520 + -0.6 238,521 - +0.1 238,643 + -0.3 238,643 + -0.3 238,643 + -1.1 238,643 + -0.4 238,643 + -1.3 238,643 + +0.1 238,643 + -0.2 238,643 + +0.5 238,643 + +0.3 238,643 + +0.0 238,643 + -1.6 238,643 + -0.0 238,643 + +1.3 238,643 + +0.3 238,643 + -0.5 238,643 + -0.1 238,643 + -0.0 238,643 + -0.3 238,643 + -0.5 238,643 + +0.7 238,643 + -0.9 238,643 + -1.3 238,643 + -0.9 238,643 + -0.1 238,643 + -0.9 238,643 + -1.1 238,644 - +0.4 238,644 - +0.7 238,644 - +0.3 238,644 - -0.4 238,644 - -1.6 238,644 - -1.9 238,644 - +1.3 238,644 - -0.4 238,644 - -0.6 238,644 - +1.4 238,644 - +0.4 238,644 - -2.5 238,644 - +0.1 238,644 - -1.0 238,644 - -0.2 238,644 - -1.5 238,644 - -0.1 238,644 - -0.3 238,644 - -0.5 238,644 - -0.3 238,644 - +0.3 238,644 - -1.9 238,644 - -1.6 238,644 - -0.9 238,645 - -0.8 238,786 + MPMX19_06675 0.14 +0.2 238,786 + MPMX19_06675 0.14 -1.4 238,786 + MPMX19_06675 0.14 +0.6 238,786 + MPMX19_06675 0.14 -0.8 238,786 + MPMX19_06675 0.14 +0.5 238,786 + MPMX19_06675 0.14 +0.4 238,786 + MPMX19_06675 0.14 -1.1 238,787 - MPMX19_06675 0.14 -0.9 238,787 - MPMX19_06675 0.14 -2.7 238,787 - MPMX19_06675 0.14 -1.9 238,787 - MPMX19_06675 0.14 -1.9 238,787 - MPMX19_06675 0.14 -1.3 238,787 - MPMX19_06675 0.14 -0.2 238,787 - MPMX19_06675 0.14 +0.1 238,787 - MPMX19_06675 0.14 -0.4 238,787 - MPMX19_06675 0.14 -0.1 238,787 - MPMX19_06675 0.14 -0.8 238,990 + MPMX19_06675 0.30 -0.8 238,990 + MPMX19_06675 0.30 -0.2 238,990 + MPMX19_06675 0.30 +0.3 239,011 + MPMX19_06675 0.32 -1.0 239,011 + MPMX19_06675 0.32 -1.4 239,012 - MPMX19_06675 0.32 +0.7 239,012 - MPMX19_06675 0.32 +0.5 239,038 + MPMX19_06675 0.34 -0.8 239,038 + MPMX19_06675 0.34 -1.0 239,038 + MPMX19_06675 0.34 -0.5 239,038 + MPMX19_06675 0.34 +1.6 239,038 + MPMX19_06675 0.34 -1.9 239,039 - MPMX19_06675 0.34 -0.8 239,039 - MPMX19_06675 0.34 -0.8 239,039 - MPMX19_06675 0.34 -0.6 239,039 - MPMX19_06675 0.34 +0.5 239,039 - MPMX19_06675 0.34 -1.1 239,149 + MPMX19_06675 0.42 +0.6 239,150 - MPMX19_06675 0.43 +0.3 239,266 + MPMX19_06675 0.52 +0.5 239,275 + MPMX19_06675 0.52 -0.6 239,275 + MPMX19_06675 0.52 -0.9 239,276 - MPMX19_06675 0.52 -0.8 239,276 - MPMX19_06675 0.52 -0.2
Or see this region's nucleotide sequence