Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06563

Experiment: NF

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NF
				remove
33,631	+	MPMX19_06562	0.74	+0.9
33,631	+	MPMX19_06562	0.74	+0.8
33,631	+	MPMX19_06562	0.74	+1.5
33,631	+	MPMX19_06562	0.74	-1.1
33,631	+	MPMX19_06562	0.74	-0.8
33,631	+	MPMX19_06562	0.74	-0.3
33,631	+	MPMX19_06562	0.74	+0.8
33,631	+	MPMX19_06562	0.74	-0.7
33,631	+	MPMX19_06562	0.74	+0.4
33,631	+	MPMX19_06562	0.74	+0.7
33,631	+	MPMX19_06562	0.74	-0.0
33,631	+	MPMX19_06562	0.74	-0.5
33,631	+	MPMX19_06562	0.74	-0.5
33,631	+	MPMX19_06562	0.74	+0.4
33,631	+	MPMX19_06562	0.74	-1.5
33,631	+	MPMX19_06562	0.74	-0.1
33,631	+	MPMX19_06562	0.74	-0.3
33,631	+	MPMX19_06562	0.74	-0.4
33,631	+	MPMX19_06562	0.74	+0.1
33,632	-	MPMX19_06562	0.74	-0.4
33,632	-	MPMX19_06562	0.74	-2.1
33,632	-	MPMX19_06562	0.74	-0.1
33,632	-	MPMX19_06562	0.74	-0.9
33,632	-	MPMX19_06562	0.74	-1.0
33,632	-	MPMX19_06562	0.74	-0.6
33,632	-	MPMX19_06562	0.74	+0.4
33,632	-	MPMX19_06562	0.74	-0.9
33,632	-	MPMX19_06562	0.74	-0.8
33,632	-	MPMX19_06562	0.74	+0.1
33,632	-	MPMX19_06562	0.74	+0.4
33,632	-	MPMX19_06562	0.74	+0.4
33,632	-	MPMX19_06562	0.74	+0.9
33,643	+	MPMX19_06562	0.75	+0.3
33,643	+	MPMX19_06562	0.75	+1.1
33,643	+	MPMX19_06562	0.75	-0.2
33,644	-	MPMX19_06562	0.75	-0.1
33,644	-	MPMX19_06562	0.75	-0.1
33,644	-	MPMX19_06562	0.75	-1.9
33,644	-	MPMX19_06562	0.75	+0.1
33,644	-	MPMX19_06562	0.75	-0.1
33,697	+	MPMX19_06562	0.77	+0.0
33,697	+	MPMX19_06562	0.77	-0.7
33,697	+	MPMX19_06562	0.77	-0.5
33,697	+	MPMX19_06562	0.77	-0.1
33,697	+	MPMX19_06562	0.77	-0.6
33,698	-	MPMX19_06562	0.77	+0.2
33,698	-	MPMX19_06562	0.77	-1.1
33,698	-	MPMX19_06562	0.77	-0.4
33,698	-	MPMX19_06562	0.77	-0.2
33,698	-	MPMX19_06562	0.77	+0.3
33,751	+	MPMX19_06562	0.79	+0.1
33,751	+	MPMX19_06562	0.79	+0.2
33,751	+	MPMX19_06562	0.79	-0.9
33,751	+	MPMX19_06562	0.79	-1.1
33,751	+	MPMX19_06562	0.79	+0.3
33,751	+	MPMX19_06562	0.79	+0.7
33,751	+	MPMX19_06562	0.79	-1.3
33,751	+	MPMX19_06562	0.79	+0.8
33,751	+	MPMX19_06562	0.79	-0.2
33,751	+	MPMX19_06562	0.79	-0.9
33,751	+	MPMX19_06562	0.79	-0.6
33,751	+	MPMX19_06562	0.79	-0.1
33,751	+	MPMX19_06562	0.79	-2.0
33,751	+	MPMX19_06562	0.79	-0.0
33,751	+	MPMX19_06562	0.79	-0.1
33,751	+	MPMX19_06562	0.79	-0.1
33,752	-	MPMX19_06562	0.79	+1.0
33,752	-	MPMX19_06562	0.79	+0.4
33,752	-	MPMX19_06562	0.79	-1.9
33,752	-	MPMX19_06562	0.79	+1.2
33,752	-	MPMX19_06562	0.79	-0.5
33,752	-	MPMX19_06562	0.79	-0.5
33,752	-	MPMX19_06562	0.79	-0.9
33,752	-	MPMX19_06562	0.79	+1.0
33,752	-	MPMX19_06562	0.79	-1.0
33,752	-	MPMX19_06562	0.79	+2.2
33,752	-	MPMX19_06562	0.79	-0.9
33,752	-	MPMX19_06562	0.79	-1.5
33,752	-	MPMX19_06562	0.79	-0.2
33,752	-	MPMX19_06562	0.79	-0.2
33,752	-	MPMX19_06562	0.79	-0.2
33,752	-	MPMX19_06562	0.79	+0.6
33,752	-	MPMX19_06562	0.79	-0.5
33,752	-	MPMX19_06562	0.79	+0.1
33,763	+	MPMX19_06562	0.79	-0.0
33,763	+	MPMX19_06562	0.79	-1.3
33,763	+	MPMX19_06562	0.79	-1.0
33,763	+	MPMX19_06562	0.79	-1.0
33,763	+	MPMX19_06562	0.79	+0.6
33,763	+	MPMX19_06562	0.79	+1.0
33,763	+	MPMX19_06562	0.79	-2.6
33,763	+	MPMX19_06562	0.79	-0.0
33,763	+	MPMX19_06562	0.79	-0.3
33,763	+	MPMX19_06562	0.79	-1.0
33,764	-	MPMX19_06562	0.79	-0.0
33,764	-	MPMX19_06562	0.79	+0.5
33,764	-	MPMX19_06562	0.79	+0.7
33,764	-	MPMX19_06562	0.79	-0.4
33,764	-	MPMX19_06562	0.79	-0.5
33,817	+	MPMX19_06562	0.81	-0.7
33,817	+	MPMX19_06562	0.81	-0.8
33,817	+	MPMX19_06562	0.81	+0.2
33,817	+	MPMX19_06562	0.81	+1.9
33,817	+	MPMX19_06562	0.81	-1.3
33,817	+	MPMX19_06562	0.81	-1.6
33,817	+	MPMX19_06562	0.81	+1.2
33,817	+	MPMX19_06562	0.81	+0.0
33,817	+	MPMX19_06562	0.81	-0.9
33,818	-	MPMX19_06562	0.82	+0.3
33,818	-	MPMX19_06562	0.82	-1.6
33,818	-	MPMX19_06562	0.82	-1.8
33,818	-	MPMX19_06562	0.82	-1.1
33,818	-	MPMX19_06562	0.82	-0.9
33,818	-	MPMX19_06562	0.82	+0.2
33,818	-	MPMX19_06562	0.82	+1.4
33,818	-	MPMX19_06562	0.82	+0.3
33,818	-	MPMX19_06562	0.82	+0.5
33,818	-	MPMX19_06562	0.82	-1.4
33,818	-	MPMX19_06562	0.82	-2.0
33,818	-	MPMX19_06562	0.82	-0.7
33,818	-	MPMX19_06562	0.82	-0.3
33,818	-	MPMX19_06562	0.82	-0.2
33,818	-	MPMX19_06562	0.82	-1.0
33,818	-	MPMX19_06562	0.82	-0.9
33,818	-	MPMX19_06562	0.82	-0.6
33,818	-	MPMX19_06562	0.82	-0.8
33,818	-	MPMX19_06562	0.82	-0.1
33,818	-	MPMX19_06562	0.82	-0.5
33,871	+	MPMX19_06562	0.84	-0.9
33,871	+	MPMX19_06562	0.84	+0.2
33,871	+	MPMX19_06562	0.84	-0.1
33,871	+	MPMX19_06562	0.84	-1.2
33,871	+	MPMX19_06562	0.84	+0.0
33,871	+	MPMX19_06562	0.84	-0.8
33,871	+	MPMX19_06562	0.84	+0.0
33,871	+	MPMX19_06562	0.84	+0.0
33,871	+	MPMX19_06562	0.84	+0.7
33,872	-	MPMX19_06562	0.84	-0.8
33,872	-	MPMX19_06562	0.84	-0.9
33,872	-	MPMX19_06562	0.84	+0.5
33,872	-	MPMX19_06562	0.84	-0.4
33,872	-	MPMX19_06562	0.84	-0.9
33,872	-	MPMX19_06562	0.84	-0.1
33,883	+	MPMX19_06562	0.84	-1.4
33,883	+	MPMX19_06562	0.84	+0.4
33,883	+	MPMX19_06562	0.84	+0.3
33,883	+	MPMX19_06562	0.84	-1.8
33,883	+	MPMX19_06562	0.84	-1.9
33,883	+	MPMX19_06562	0.84	-0.5
33,883	+	MPMX19_06562	0.84	-1.1
33,883	+	MPMX19_06562	0.84	-1.0
33,883	+	MPMX19_06562	0.84	-0.1
33,883	+	MPMX19_06562	0.84	+0.5
33,884	-	MPMX19_06562	0.84	+0.2
33,884	-	MPMX19_06562	0.84	-2.5
33,884	-	MPMX19_06562	0.84	-0.3
33,884	-	MPMX19_06562	0.84	-0.4
33,884	-	MPMX19_06562	0.84	+0.0
33,884	-	MPMX19_06562	0.84	-0.3
33,937	+	MPMX19_06562	0.86	-2.3
33,937	+	MPMX19_06562	0.86	-1.2
33,937	+	MPMX19_06562	0.86	-0.8
33,937	+	MPMX19_06562	0.86	-1.6
33,937	+	MPMX19_06562	0.86	-0.8
33,937	+	MPMX19_06562	0.86	+0.9
33,937	+	MPMX19_06562	0.86	-0.6
33,937	+	MPMX19_06562	0.86	-0.3
33,937	+	MPMX19_06562	0.86	-0.3
33,937	+	MPMX19_06562	0.86	+1.2
33,937	+	MPMX19_06562	0.86	+0.2
33,937	+	MPMX19_06562	0.86	+2.1
33,937	+	MPMX19_06562	0.86	-0.7
33,937	+	MPMX19_06562	0.86	-0.1
33,937	+	MPMX19_06562	0.86	-0.2
33,937	+	MPMX19_06562	0.86	+0.0
33,937	+	MPMX19_06562	0.86	+0.2
33,937	+	MPMX19_06562	0.86	-0.6
33,937	+	MPMX19_06562	0.86	-1.3
33,937	+	MPMX19_06562	0.86	+0.6
33,937	+	MPMX19_06562	0.86	-0.8
33,937	+	MPMX19_06562	0.86	-1.8
33,937	+	MPMX19_06562	0.86	-0.0
33,937	+	MPMX19_06562	0.86	-0.5
33,937	+	MPMX19_06562	0.86	+0.8
33,937	+	MPMX19_06562	0.86	+0.7
33,937	+	MPMX19_06562	0.86	-1.0
33,937	+	MPMX19_06562	0.86	-2.4
33,937	+	MPMX19_06562	0.86	+0.1
33,937	+	MPMX19_06562	0.86	+0.1
33,937	+	MPMX19_06562	0.86	+0.4
33,937	+	MPMX19_06562	0.86	+0.1
33,937	+	MPMX19_06562	0.86	-0.5
33,937	+	MPMX19_06562	0.86	+0.6
33,937	+	MPMX19_06562	0.86	-0.0
33,937	+	MPMX19_06562	0.86	-0.6
33,937	+	MPMX19_06562	0.86	+0.9
33,937	+	MPMX19_06562	0.86	-1.0
33,937	+	MPMX19_06562	0.86	-1.1
33,937	+	MPMX19_06562	0.86	-0.4
33,937	+	MPMX19_06562	0.86	-1.1
33,937	+	MPMX19_06562	0.86	+0.4
33,938	-	MPMX19_06562	0.86	+0.1
33,938	-	MPMX19_06562	0.86	+0.9
33,938	-	MPMX19_06562	0.86	+0.2
33,938	-	MPMX19_06562	0.86	-0.5
33,938	-	MPMX19_06562	0.86	-1.5
33,938	-	MPMX19_06562	0.86	-0.1
33,938	-	MPMX19_06562	0.86	+0.5
33,938	-	MPMX19_06562	0.86	-0.7
33,938	-	MPMX19_06562	0.86	-0.3
33,938	-	MPMX19_06562	0.86	-2.8
33,938	-	MPMX19_06562	0.86	-2.0
33,938	-	MPMX19_06562	0.86	+0.9
33,938	-	MPMX19_06562	0.86	-2.4
33,938	-	MPMX19_06562	0.86	-1.3
33,938	-	MPMX19_06562	0.86	-0.7
33,938	-	MPMX19_06562	0.86	-2.9
33,938	-	MPMX19_06562	0.86	-1.5
33,938	-	MPMX19_06562	0.86	-0.6
33,938	-	MPMX19_06562	0.86	-0.7
33,938	-	MPMX19_06562	0.86	+1.7
33,938	-	MPMX19_06562	0.86	-0.5
33,938	-	MPMX19_06562	0.86	-0.6
33,938	-	MPMX19_06562	0.86	-0.7
33,938	-	MPMX19_06562	0.86	-0.5
33,938	-	MPMX19_06562	0.86	-0.0
33,938	-	MPMX19_06562	0.86	-1.3
33,938	-	MPMX19_06562	0.86	+0.8
33,938	-	MPMX19_06562	0.86	-1.3
33,938	-	MPMX19_06562	0.86	-0.5
33,938	-	MPMX19_06562	0.86	-1.6
33,938	-	MPMX19_06562	0.86	-0.3
33,938	-	MPMX19_06562	0.86	-1.0
33,938	-	MPMX19_06562	0.86	+0.2
33,938	-	MPMX19_06562	0.86	-0.7
33,938	-	MPMX19_06562	0.86	+0.0
33,938	-	MPMX19_06562	0.86	-2.4
33,938	-	MPMX19_06562	0.86	-0.9
33,938	-	MPMX19_06562	0.86	-2.2
33,992	-	MPMX19_06562	0.88	-1.1
33,992	-	MPMX19_06562	0.88	-1.1
33,992	-	MPMX19_06562	0.88	+1.0
33,992	-	MPMX19_06562	0.88	-0.2
33,992	-	MPMX19_06562	0.88	+0.6
33,992	-	MPMX19_06562	0.88	+0.8
33,992	-	MPMX19_06562	0.88	-0.8
34,057	+			-0.1
34,057	+			-1.5
34,057	+			-1.2
34,057	+			+0.5
34,057	+			+0.1
34,057	+			+0.0
34,057	+			-2.0
34,057	+			-2.4
34,057	+			+0.9
34,057	+			-1.9
34,057	+			-1.3
34,057	+			+0.3
34,057	+			-0.1
34,057	+			-0.6
34,057	+			+0.2
34,057	+			-0.5
34,058	-			+1.4
34,058	-			+0.1
34,058	-			+0.7
34,058	-			-1.1
34,058	-			-0.6
34,058	-			-0.2
34,058	-			-0.4
34,058	-			-0.4
34,058	-			+0.2
34,058	-			-0.0
34,058	-			+0.7
34,111	+			-1.2
34,111	+			-0.5
34,111	+			-0.3
34,111	+			-0.9
34,111	+			-0.8
34,112	-			+0.3
34,112	-			-0.5
34,112	-			-1.3
34,112	-			-0.5
34,177	+			-1.1
34,177	+			-1.5
34,177	+			+0.1
34,177	+			+0.6
34,177	+			+0.4
34,177	+			+0.0
34,177	+			+0.1
34,177	+			-0.6
34,177	+			-1.5
34,177	+			-0.0
34,177	+			-1.4
34,177	+			+1.2
34,177	+			-1.8
34,177	+			+0.1
34,177	+			-1.8
34,177	+			+0.3
34,177	+			-0.5
34,177	+			-1.6
34,177	+			-0.2
34,177	+			-1.6
34,177	+			-0.5
34,177	+			+0.5
34,177	+			-0.5
34,177	+			+1.1
34,177	+			-1.5
34,177	+			+0.4
34,177	+			-0.6
34,177	+			-0.1
34,177	+			+0.4
34,177	+			-0.7
34,177	+			-0.6
34,177	+			+0.5
34,177	+			-1.5
34,177	+			-2.1
34,177	+			-0.9
34,177	+			+0.6
34,177	+			-0.1
34,177	+			-0.9
34,177	+			-0.6
34,178	-			-0.4
34,178	-			-0.6
34,178	-			+0.0
34,178	-			+0.1
34,178	-			-0.9
34,178	-			-1.4
34,178	-			-1.5
34,178	-			-0.1
34,178	-			-0.7
34,178	-			-0.4
34,178	-			-1.4
34,178	-			-0.2
34,178	-			+0.1
34,178	-			-1.8
34,178	-			-0.9
34,178	-			+0.1
34,178	-			+0.1
34,178	-			-0.9
34,178	-			-0.3
34,178	-			+1.4
34,178	-			-0.1
34,178	-			-2.7
34,178	-			-1.4
34,178	-			+1.0
34,178	-			+0.2
34,178	-			-0.0
34,178	-			-1.6
34,178	-			+0.4
34,178	-			-0.7
34,396	+			-0.5
34,396	+			-1.3
34,397	-			-1.3
34,410	+			-0.3
34,410	+			+0.1
34,411	-			+0.3
34,411	-			+0.0
34,411	-			-0.5
34,411	-			-1.4
34,429	-			-0.5
34,429	-			+0.7
34,594	-	MPMX19_06563	0.14	-0.3
34,750	+	MPMX19_06563	0.31	+0.2
34,750	+	MPMX19_06563	0.31	-0.0
34,750	+	MPMX19_06563	0.31	+1.0
34,750	+	MPMX19_06563	0.31	-1.0
34,750	+	MPMX19_06563	0.31	-0.2
34,750	+	MPMX19_06563	0.31	-2.3
34,750	+	MPMX19_06563	0.31	-0.2
34,750	+	MPMX19_06563	0.31	+0.7
34,750	+	MPMX19_06563	0.31	+0.1
34,750	+	MPMX19_06563	0.31	-1.9
34,750	+	MPMX19_06563	0.31	+0.3
34,751	-	MPMX19_06563	0.31	-1.8
34,751	-	MPMX19_06563	0.31	-0.5
34,751	-	MPMX19_06563	0.31	-0.3
34,751	-	MPMX19_06563	0.31	+0.9
34,751	-	MPMX19_06563	0.31	+0.1
34,751	-	MPMX19_06563	0.31	-3.2
34,751	-	MPMX19_06563	0.31	+2.4
34,751	-	MPMX19_06563	0.31	+0.6
34,751	-	MPMX19_06563	0.31	+0.1
34,751	-	MPMX19_06563	0.31	-0.0
35,317	+			+0.4
35,317	+			-1.3
35,317	+			-0.9
35,317	+			+1.7
35,317	+			-0.3
35,317	+			+0.4
35,317	+			-0.3
35,317	+			-0.1
35,317	+			-0.8
35,317	+			-0.6
35,317	+			+0.4
35,317	+			+0.7
35,317	+			-0.2
35,317	+			-0.5
35,317	+			-1.0
35,318	-			+0.5
35,318	-			-1.2
35,318	-			+0.9
35,318	-			+0.4
35,318	-			+0.0
35,318	-			-0.1
35,318	-			+0.0
35,318	-			-0.6
35,349	+			+0.1
35,350	-			-0.9
35,460	+			-3.1
35,460	+			-2.0
35,461	-			-1.8
35,461	-			+0.1
35,461	-			+0.3
35,461	-			+0.2

Or see this region's nucleotide sequence