Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06526

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06525 and MPMX19_06526 are separated by 10 nucleotidesMPMX19_06526 and MPMX19_06527 overlap by 4 nucleotidesMPMX19_06527 and MPMX19_06528 overlap by 4 nucleotides MPMX19_06525: MPMX19_06525 - Adenine deaminase, at 311,848 to 313,527 _06525 MPMX19_06526: MPMX19_06526 - Putative aliphatic sulfonates transport permease protein SsuC, at 313,538 to 314,431 _06526 MPMX19_06527: MPMX19_06527 - Bicarbonate transport ATP-binding protein CmpD, at 314,428 to 315,225 _06527 MPMX19_06528: MPMX19_06528 - hypothetical protein, at 315,222 to 316,268 _06528 Position (kb) 313 314 315Strain fitness (log2 ratio) -2 -1 0 1at 312.575 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.945 kb on - strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.770 kb on - strand, within MPMX19_06526at 313.770 kb on - strand, within MPMX19_06526at 313.770 kb on - strand, within MPMX19_06526at 313.770 kb on - strand, within MPMX19_06526at 313.852 kb on - strand, within MPMX19_06526at 314.338 kb on + strand, within MPMX19_06526at 314.504 kb on + strandat 314.504 kb on + strandat 314.505 kb on - strandat 314.505 kb on - strandat 314.964 kb on - strand, within MPMX19_06527at 314.964 kb on - strand, within MPMX19_06527at 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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312,575 + MPMX19_06525 0.43 -0.9
312,812 + MPMX19_06525 0.57 -1.0
312,812 + MPMX19_06525 0.57 -0.7
312,812 + MPMX19_06525 0.57 -1.6
312,812 + MPMX19_06525 0.57 -0.2
312,812 + MPMX19_06525 0.57 -0.1
312,945 - MPMX19_06525 0.65 +0.6
313,076 + MPMX19_06525 0.73 -2.6
313,076 + MPMX19_06525 0.73 +0.9
313,076 + MPMX19_06525 0.73 +0.2
313,076 + MPMX19_06525 0.73 -0.1
313,076 + MPMX19_06525 0.73 +0.6
313,076 + MPMX19_06525 0.73 +0.5
313,076 + MPMX19_06525 0.73 +0.3
313,076 + MPMX19_06525 0.73 +0.0
313,076 + MPMX19_06525 0.73 -0.4
313,683 + MPMX19_06526 0.16 -0.3
313,683 + MPMX19_06526 0.16 -0.4
313,683 + MPMX19_06526 0.16 -0.9
313,683 + MPMX19_06526 0.16 +1.1
313,683 + MPMX19_06526 0.16 -1.7
313,683 + MPMX19_06526 0.16 -0.6
313,683 + MPMX19_06526 0.16 -1.4
313,683 + MPMX19_06526 0.16 -0.7
313,683 + MPMX19_06526 0.16 -0.2
313,769 + MPMX19_06526 0.26 +0.3
313,769 + MPMX19_06526 0.26 -1.6
313,769 + MPMX19_06526 0.26 +0.1
313,769 + MPMX19_06526 0.26 +1.4
313,769 + MPMX19_06526 0.26 +0.4
313,769 + MPMX19_06526 0.26 +0.3
313,770 - MPMX19_06526 0.26 +1.4
313,770 - MPMX19_06526 0.26 +0.6
313,770 - MPMX19_06526 0.26 -0.7
313,770 - MPMX19_06526 0.26 +1.7
313,852 - MPMX19_06526 0.35 +1.2
314,338 + MPMX19_06526 0.89 +0.4
314,504 + -0.0
314,504 + -0.4
314,505 - -1.3
314,505 - -1.0
314,964 - MPMX19_06527 0.67 +0.5
314,964 - MPMX19_06527 0.67 -1.6
315,183 - -0.5
315,183 - +0.8
315,183 - +0.3
315,183 - -0.1
315,183 - +1.0
315,183 - -2.4
315,183 - +0.0
315,183 - -0.9

Or see this region's nucleotide sequence