Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06518

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06517 and MPMX19_06518 overlap by 20 nucleotidesMPMX19_06518 and MPMX19_06519 are separated by 31 nucleotidesMPMX19_06519 and MPMX19_06520 are separated by 204 nucleotides MPMX19_06517: MPMX19_06517 - Vitamin B12 import ATP-binding protein BtuD, at 302,578 to 303,696 _06517 MPMX19_06518: MPMX19_06518 - Methionine import system permease protein MetP, at 303,677 to 304,333 _06518 MPMX19_06519: MPMX19_06519 - HTH-type transcriptional repressor NagR, at 304,365 to 305,084 _06519 MPMX19_06520: MPMX19_06520 - Nitrate import ATP-binding protein NrtC, at 305,289 to 306,131 _06520 Position (kb) 303 304 305Strain fitness (log2 ratio) -2 -1 0 1 2at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.698 kb on + strand, within MPMX19_06517at 302.699 kb on - strand, within MPMX19_06517at 302.913 kb on + strand, within MPMX19_06517at 302.913 kb on + strand, within MPMX19_06517at 302.913 kb on + strand, within MPMX19_06517at 302.913 kb on + strand, within MPMX19_06517at 302.914 kb on - strand, within MPMX19_06517at 302.914 kb on - strand, within MPMX19_06517at 302.914 kb on - strand, within MPMX19_06517at 303.067 kb on + strand, within MPMX19_06517at 303.676 kb on + strandat 303.676 kb on + strandat 303.701 kb on + strandat 303.702 kb on - strandat 303.815 kb on + strand, within MPMX19_06518at 303.816 kb on - strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.987 kb on - strand, within MPMX19_06518at 303.987 kb on - strand, within MPMX19_06518at 304.218 kb on - strand, within MPMX19_06518at 304.226 kb on + strand, within MPMX19_06518at 304.226 kb on + strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.367 kb on - strandat 304.399 kb on + strandat 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519at 305.050 kb on + strandat 305.050 kb on + strandat 305.177 kb on + strandat 305.178 kb on - strandat 305.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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302,698 + MPMX19_06517 0.11 -1.0
302,698 + MPMX19_06517 0.11 -0.0
302,698 + MPMX19_06517 0.11 +0.3
302,698 + MPMX19_06517 0.11 -0.2
302,698 + MPMX19_06517 0.11 -0.7
302,698 + MPMX19_06517 0.11 -0.7
302,699 - MPMX19_06517 0.11 -0.6
302,913 + MPMX19_06517 0.30 +0.9
302,913 + MPMX19_06517 0.30 +0.9
302,913 + MPMX19_06517 0.30 -0.3
302,913 + MPMX19_06517 0.30 -1.6
302,914 - MPMX19_06517 0.30 -1.5
302,914 - MPMX19_06517 0.30 +0.8
302,914 - MPMX19_06517 0.30 -2.1
303,067 + MPMX19_06517 0.44 -0.1
303,676 + +0.0
303,676 + -0.6
303,701 + -1.4
303,702 - -0.9
303,815 + MPMX19_06518 0.21 +0.3
303,816 - MPMX19_06518 0.21 -0.8
303,986 + MPMX19_06518 0.47 +2.3
303,986 + MPMX19_06518 0.47 +1.2
303,986 + MPMX19_06518 0.47 +0.2
303,986 + MPMX19_06518 0.47 +0.9
303,986 + MPMX19_06518 0.47 -0.5
303,986 + MPMX19_06518 0.47 -0.0
303,986 + MPMX19_06518 0.47 +0.1
303,987 - MPMX19_06518 0.47 +0.3
303,987 - MPMX19_06518 0.47 -1.0
304,218 - MPMX19_06518 0.82 +1.1
304,226 + MPMX19_06518 0.84 +1.0
304,226 + MPMX19_06518 0.84 +0.9
304,227 - MPMX19_06518 0.84 +0.3
304,227 - MPMX19_06518 0.84 +0.5
304,227 - MPMX19_06518 0.84 -0.2
304,227 - MPMX19_06518 0.84 -0.8
304,227 - MPMX19_06518 0.84 +1.9
304,227 - MPMX19_06518 0.84 +0.2
304,367 - -0.5
304,399 + -0.4
304,597 + MPMX19_06519 0.32 -0.7
304,597 + MPMX19_06519 0.32 +0.1
304,597 + MPMX19_06519 0.32 +0.4
304,597 + MPMX19_06519 0.32 -0.7
305,050 + -0.3
305,050 + -1.4
305,177 + +0.5
305,178 - -0.1
305,178 - -0.9

Or see this region's nucleotide sequence