Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06513 and MPMX19_06514 are separated by 122 nucleotides MPMX19_06514 and MPMX19_06515 overlap by 4 nucleotides MPMX19_06515 and MPMX19_06516 are separated by 30 nucleotides
MPMX19_06513: MPMX19_06513 - putative N-succinyldiaminopimelate aminotransferase DapC, at 298,581 to 299,747
_06513
MPMX19_06514: MPMX19_06514 - L-methionine gamma-lyase, at 299,870 to 301,123
_06514
MPMX19_06515: MPMX19_06515 - hypothetical protein, at 301,120 to 301,668
_06515
MPMX19_06516: MPMX19_06516 - D-methionine-binding lipoprotein MetQ, at 301,699 to 302,526
_06516
Position (kb)
299
300
301
302 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 298.975 kb on + strand, within MPMX19_06513 at 298.975 kb on + strand, within MPMX19_06513 at 298.975 kb on + strand, within MPMX19_06513 at 298.976 kb on - strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.027 kb on - strand, within MPMX19_06513 at 299.027 kb on - strand, within MPMX19_06513 at 299.110 kb on + strand, within MPMX19_06513 at 299.110 kb on + strand, within MPMX19_06513 at 299.110 kb on + strand, within MPMX19_06513 at 299.111 kb on - strand, within MPMX19_06513 at 299.152 kb on + strand, within MPMX19_06513 at 299.152 kb on + strand, within MPMX19_06513 at 299.152 kb on + strand, within MPMX19_06513 at 299.152 kb on + strand, within MPMX19_06513 at 299.153 kb on - strand, within MPMX19_06513 at 299.153 kb on - strand, within MPMX19_06513 at 299.153 kb on - strand, within MPMX19_06513 at 299.153 kb on - strand, within MPMX19_06513 at 299.221 kb on - strand, within MPMX19_06513 at 299.384 kb on - strand, within MPMX19_06513 at 299.384 kb on - strand, within MPMX19_06513 at 299.392 kb on + strand, within MPMX19_06513 at 299.393 kb on - strand, within MPMX19_06513 at 299.689 kb on - strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 300.050 kb on + strand, within MPMX19_06514 at 300.050 kb on + strand, within MPMX19_06514 at 300.050 kb on + strand, within MPMX19_06514 at 300.050 kb on + strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.233 kb on + strand, within MPMX19_06514 at 300.233 kb on + strand, within MPMX19_06514 at 300.233 kb on + strand, within MPMX19_06514 at 300.233 kb on + strand, within MPMX19_06514 at 300.234 kb on - strand, within MPMX19_06514 at 300.234 kb on - strand, within MPMX19_06514 at 300.234 kb on - strand, within MPMX19_06514 at 300.602 kb on + strand, within MPMX19_06514 at 300.603 kb on - strand, within MPMX19_06514 at 300.603 kb on - strand, within MPMX19_06514 at 300.956 kb on + strand, within MPMX19_06514 at 300.956 kb on + strand, within MPMX19_06514 at 300.956 kb on + strand, within MPMX19_06514 at 300.957 kb on - strand, within MPMX19_06514 at 300.957 kb on - strand, within MPMX19_06514 at 300.957 kb on - strand, within MPMX19_06514 at 301.138 kb on + strand at 301.138 kb on + strand at 301.139 kb on - strand at 301.139 kb on - strand at 301.139 kb on - strand at 301.139 kb on - strand at 301.139 kb on - strand at 301.139 kb on - strand at 301.313 kb on - strand, within MPMX19_06515 at 301.479 kb on + strand, within MPMX19_06515 at 301.479 kb on + strand, within MPMX19_06515 at 301.479 kb on + strand, within MPMX19_06515 at 301.480 kb on - strand, within MPMX19_06515 at 301.489 kb on + strand, within MPMX19_06515 at 301.489 kb on + strand, within MPMX19_06515 at 301.508 kb on - strand, within MPMX19_06515 at 301.508 kb on - strand, within MPMX19_06515 at 301.508 kb on - strand, within MPMX19_06515 at 301.508 kb on - strand, within MPMX19_06515 at 301.508 kb on - strand, within MPMX19_06515 at 301.508 kb on - strand, within MPMX19_06515 at 301.508 kb on - strand, within MPMX19_06515 at 301.715 kb on + strand at 301.715 kb on + strand at 301.716 kb on - strand at 301.968 kb on + strand, within MPMX19_06516 at 301.968 kb on + strand, within MPMX19_06516 at 301.969 kb on - strand, within MPMX19_06516 at 301.969 kb on - strand, within MPMX19_06516 at 302.005 kb on + strand, within MPMX19_06516 at 302.006 kb on - strand, within MPMX19_06516 at 302.006 kb on - strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.032 kb on + strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.033 kb on - strand, within MPMX19_06516 at 302.053 kb on + strand, within MPMX19_06516 at 302.053 kb on + strand, within MPMX19_06516 at 302.054 kb on - strand, within MPMX19_06516 at 302.054 kb on - strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.065 kb on + strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516 at 302.066 kb on - strand, within MPMX19_06516
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 298,975 + MPMX19_06513 0.34 +1.9 298,975 + MPMX19_06513 0.34 -0.4 298,975 + MPMX19_06513 0.34 +0.5 298,976 - MPMX19_06513 0.34 +0.8 299,026 + MPMX19_06513 0.38 +0.9 299,026 + MPMX19_06513 0.38 -0.7 299,026 + MPMX19_06513 0.38 +0.3 299,026 + MPMX19_06513 0.38 -0.3 299,026 + MPMX19_06513 0.38 +0.3 299,027 - MPMX19_06513 0.38 +1.7 299,027 - MPMX19_06513 0.38 +0.0 299,110 + MPMX19_06513 0.45 +0.1 299,110 + MPMX19_06513 0.45 +0.9 299,110 + MPMX19_06513 0.45 +0.5 299,111 - MPMX19_06513 0.45 +1.4 299,152 + MPMX19_06513 0.49 -1.4 299,152 + MPMX19_06513 0.49 +1.2 299,152 + MPMX19_06513 0.49 -0.1 299,152 + MPMX19_06513 0.49 +0.3 299,153 - MPMX19_06513 0.49 -1.6 299,153 - MPMX19_06513 0.49 -0.3 299,153 - MPMX19_06513 0.49 -0.4 299,153 - MPMX19_06513 0.49 -0.4 299,221 - MPMX19_06513 0.55 +0.2 299,384 - MPMX19_06513 0.69 -0.2 299,384 - MPMX19_06513 0.69 +0.2 299,392 + MPMX19_06513 0.69 +0.4 299,393 - MPMX19_06513 0.70 +0.5 299,689 - +0.7 299,993 + -1.3 299,993 + -0.1 299,993 + +0.8 299,993 + +0.4 299,993 + -0.4 299,994 - -1.1 299,994 - -0.7 299,994 - +0.3 299,994 - -0.2 299,994 - -0.8 299,994 - -0.1 299,994 - -0.5 300,050 + MPMX19_06514 0.14 +0.2 300,050 + MPMX19_06514 0.14 -0.2 300,050 + MPMX19_06514 0.14 +0.2 300,050 + MPMX19_06514 0.14 -0.8 300,051 - MPMX19_06514 0.14 +0.6 300,051 - MPMX19_06514 0.14 +0.7 300,051 - MPMX19_06514 0.14 -0.5 300,051 - MPMX19_06514 0.14 +1.7 300,051 - MPMX19_06514 0.14 -1.3 300,051 - MPMX19_06514 0.14 +0.1 300,051 - MPMX19_06514 0.14 -2.0 300,051 - MPMX19_06514 0.14 -0.1 300,051 - MPMX19_06514 0.14 +1.4 300,051 - MPMX19_06514 0.14 -0.2 300,051 - MPMX19_06514 0.14 +0.9 300,056 + MPMX19_06514 0.15 +0.1 300,056 + MPMX19_06514 0.15 -0.2 300,056 + MPMX19_06514 0.15 +0.0 300,056 + MPMX19_06514 0.15 +1.5 300,056 + MPMX19_06514 0.15 +0.9 300,056 + MPMX19_06514 0.15 -0.6 300,056 + MPMX19_06514 0.15 +0.7 300,056 + MPMX19_06514 0.15 +0.1 300,056 + MPMX19_06514 0.15 +0.9 300,056 + MPMX19_06514 0.15 -0.7 300,057 - MPMX19_06514 0.15 +0.2 300,057 - MPMX19_06514 0.15 +2.2 300,057 - MPMX19_06514 0.15 -0.0 300,057 - MPMX19_06514 0.15 +1.2 300,057 - MPMX19_06514 0.15 +0.3 300,057 - MPMX19_06514 0.15 +1.9 300,057 - MPMX19_06514 0.15 +0.6 300,057 - MPMX19_06514 0.15 -1.5 300,233 + MPMX19_06514 0.29 +0.5 300,233 + MPMX19_06514 0.29 -0.9 300,233 + MPMX19_06514 0.29 -0.2 300,233 + MPMX19_06514 0.29 +0.7 300,234 - MPMX19_06514 0.29 -0.4 300,234 - MPMX19_06514 0.29 -0.1 300,234 - MPMX19_06514 0.29 -1.0 300,602 + MPMX19_06514 0.58 -1.2 300,603 - MPMX19_06514 0.58 -1.9 300,603 - MPMX19_06514 0.58 -0.4 300,956 + MPMX19_06514 0.87 -1.3 300,956 + MPMX19_06514 0.87 +0.5 300,956 + MPMX19_06514 0.87 -0.0 300,957 - MPMX19_06514 0.87 -0.7 300,957 - MPMX19_06514 0.87 +0.5 300,957 - MPMX19_06514 0.87 +1.1 301,138 + +1.9 301,138 + -0.6 301,139 - +1.9 301,139 - +0.2 301,139 - +0.5 301,139 - +1.5 301,139 - -0.9 301,139 - +0.5 301,313 - MPMX19_06515 0.35 -1.6 301,479 + MPMX19_06515 0.65 -2.4 301,479 + MPMX19_06515 0.65 -0.6 301,479 + MPMX19_06515 0.65 +0.5 301,480 - MPMX19_06515 0.66 +0.2 301,489 + MPMX19_06515 0.67 +1.3 301,489 + MPMX19_06515 0.67 +0.1 301,508 - MPMX19_06515 0.71 -0.9 301,508 - MPMX19_06515 0.71 -0.2 301,508 - MPMX19_06515 0.71 +3.5 301,508 - MPMX19_06515 0.71 -0.3 301,508 - MPMX19_06515 0.71 +0.6 301,508 - MPMX19_06515 0.71 -0.8 301,508 - MPMX19_06515 0.71 +0.1 301,715 + -1.6 301,715 + +1.3 301,716 - +1.6 301,968 + MPMX19_06516 0.32 -0.2 301,968 + MPMX19_06516 0.32 -1.3 301,969 - MPMX19_06516 0.33 -0.3 301,969 - MPMX19_06516 0.33 -0.7 302,005 + MPMX19_06516 0.37 +0.3 302,006 - MPMX19_06516 0.37 -0.9 302,006 - MPMX19_06516 0.37 -1.1 302,032 + MPMX19_06516 0.40 -0.9 302,032 + MPMX19_06516 0.40 -0.6 302,032 + MPMX19_06516 0.40 +0.9 302,032 + MPMX19_06516 0.40 +0.5 302,032 + MPMX19_06516 0.40 +1.9 302,032 + MPMX19_06516 0.40 -0.7 302,032 + MPMX19_06516 0.40 -0.4 302,032 + MPMX19_06516 0.40 +0.3 302,032 + MPMX19_06516 0.40 -0.9 302,032 + MPMX19_06516 0.40 -1.7 302,032 + MPMX19_06516 0.40 +1.9 302,032 + MPMX19_06516 0.40 +0.2 302,033 - MPMX19_06516 0.40 -0.1 302,033 - MPMX19_06516 0.40 -0.1 302,033 - MPMX19_06516 0.40 -0.9 302,033 - MPMX19_06516 0.40 -1.4 302,033 - MPMX19_06516 0.40 -0.4 302,033 - MPMX19_06516 0.40 -0.4 302,033 - MPMX19_06516 0.40 +0.3 302,033 - MPMX19_06516 0.40 -0.1 302,033 - MPMX19_06516 0.40 -0.8 302,033 - MPMX19_06516 0.40 -1.6 302,033 - MPMX19_06516 0.40 +0.1 302,033 - MPMX19_06516 0.40 -0.1 302,033 - MPMX19_06516 0.40 +0.2 302,033 - MPMX19_06516 0.40 +0.5 302,033 - MPMX19_06516 0.40 -1.0 302,033 - MPMX19_06516 0.40 +0.1 302,053 + MPMX19_06516 0.43 +0.2 302,053 + MPMX19_06516 0.43 -0.2 302,054 - MPMX19_06516 0.43 -0.3 302,054 - MPMX19_06516 0.43 +1.3 302,065 + MPMX19_06516 0.44 -0.1 302,065 + MPMX19_06516 0.44 -1.7 302,065 + MPMX19_06516 0.44 +0.2 302,065 + MPMX19_06516 0.44 -0.7 302,065 + MPMX19_06516 0.44 +1.3 302,065 + MPMX19_06516 0.44 -0.4 302,065 + MPMX19_06516 0.44 -0.3 302,065 + MPMX19_06516 0.44 -1.2 302,065 + MPMX19_06516 0.44 +0.3 302,065 + MPMX19_06516 0.44 -1.1 302,065 + MPMX19_06516 0.44 +2.2 302,065 + MPMX19_06516 0.44 -1.9 302,065 + MPMX19_06516 0.44 -0.9 302,066 - MPMX19_06516 0.44 -2.4 302,066 - MPMX19_06516 0.44 -1.6 302,066 - MPMX19_06516 0.44 +0.1 302,066 - MPMX19_06516 0.44 -2.0 302,066 - MPMX19_06516 0.44 -0.7 302,066 - MPMX19_06516 0.44 +0.5 302,066 - MPMX19_06516 0.44 +0.3 302,066 - MPMX19_06516 0.44 -0.4 302,066 - MPMX19_06516 0.44 -1.3 302,066 - MPMX19_06516 0.44 +0.7 302,066 - MPMX19_06516 0.44 -0.3 302,066 - MPMX19_06516 0.44 +0.0 302,066 - MPMX19_06516 0.44 -0.2 302,066 - MPMX19_06516 0.44 -0.6
Or see this region's nucleotide sequence