Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06502

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06501 and MPMX19_06502 are separated by 173 nucleotidesMPMX19_06502 and MPMX19_06503 are separated by 73 nucleotidesMPMX19_06503 and MPMX19_06504 are separated by 294 nucleotidesMPMX19_06504 and MPMX19_06505 are separated by 33 nucleotides MPMX19_06501: MPMX19_06501 - hypothetical protein, at 285,188 to 286,375 _06501 MPMX19_06502: MPMX19_06502 - 60 kDa chaperonin 1, at 286,549 to 288,180 _06502 MPMX19_06503: MPMX19_06503 - 10 kDa chaperonin 5, at 288,254 to 288,547 _06503 MPMX19_06504: MPMX19_06504 - hypothetical protein, at 288,842 to 288,970 _06504 MPMX19_06505: MPMX19_06505 - hypothetical protein, at 289,004 to 290,521 _06505 Position (kb) 286 287 288 289Strain fitness (log2 ratio) -2 -1 0 1 2at 285.573 kb on + strand, within MPMX19_06501at 285.574 kb on - strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.990 kb on + strand, within MPMX19_06501at 285.990 kb on + strand, within MPMX19_06501at 285.990 kb on + strand, within MPMX19_06501at 285.991 kb on - strand, within MPMX19_06501at 285.991 kb on - strand, within MPMX19_06501at 285.991 kb on - strand, within MPMX19_06501at 285.991 kb on - strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.206 kb on + strand, within MPMX19_06501at 286.207 kb on - strand, within MPMX19_06501at 286.397 kb on + strandat 286.397 kb on + strandat 286.398 kb on - strandat 286.398 kb on - strandat 286.398 kb on - strandat 286.560 kb on - strandat 286.612 kb on + strandat 286.613 kb on - strandat 286.746 kb on - strand, within MPMX19_06502at 286.919 kb on + strand, within MPMX19_06502at 286.919 kb on + strand, within MPMX19_06502at 286.919 kb on + strand, within MPMX19_06502at 286.919 kb on + strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 287.102 kb on + strand, within MPMX19_06502at 287.102 kb on + strand, within MPMX19_06502at 287.103 kb on - strand, within MPMX19_06502at 287.103 kb on - strand, within MPMX19_06502at 287.103 kb on - strand, within MPMX19_06502at 287.103 kb on - strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.525 kb on + strand, within MPMX19_06502at 287.526 kb on - strand, within MPMX19_06502at 287.526 kb on - strand, within MPMX19_06502at 287.526 kb on - strand, within MPMX19_06502at 287.526 kb on - strand, within MPMX19_06502at 287.526 kb on - strand, within MPMX19_06502at 287.526 kb on - strand, within MPMX19_06502at 287.574 kb on - strand, within MPMX19_06502at 287.586 kb on - strand, within MPMX19_06502at 287.586 kb on - strand, within MPMX19_06502at 288.195 kb on + strandat 288.195 kb on + strandat 288.644 kb on - strandat 288.968 kb on + strandat 288.968 kb on + strandat 289.025 kb on + strandat 289.121 kb on - strandat 289.121 kb on - strandat 289.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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285,573 + MPMX19_06501 0.32 -0.1
285,574 - MPMX19_06501 0.32 +0.2
285,651 + MPMX19_06501 0.39 -0.2
285,651 + MPMX19_06501 0.39 -0.4
285,651 + MPMX19_06501 0.39 -1.6
285,651 + MPMX19_06501 0.39 -0.6
285,651 + MPMX19_06501 0.39 -1.6
285,652 - MPMX19_06501 0.39 -2.5
285,652 - MPMX19_06501 0.39 -0.7
285,652 - MPMX19_06501 0.39 +0.3
285,652 - MPMX19_06501 0.39 -0.5
285,652 - MPMX19_06501 0.39 -1.1
285,652 - MPMX19_06501 0.39 -1.4
285,652 - MPMX19_06501 0.39 +0.1
285,652 - MPMX19_06501 0.39 -0.4
285,654 + MPMX19_06501 0.39 +0.4
285,654 + MPMX19_06501 0.39 +1.9
285,654 + MPMX19_06501 0.39 +0.6
285,654 + MPMX19_06501 0.39 +0.1
285,654 + MPMX19_06501 0.39 +1.3
285,654 + MPMX19_06501 0.39 -0.8
285,655 - MPMX19_06501 0.39 +0.2
285,655 - MPMX19_06501 0.39 -1.8
285,655 - MPMX19_06501 0.39 +1.9
285,655 - MPMX19_06501 0.39 -0.4
285,655 - MPMX19_06501 0.39 -0.0
285,655 - MPMX19_06501 0.39 -0.1
285,655 - MPMX19_06501 0.39 -0.1
285,655 - MPMX19_06501 0.39 -0.1
285,655 - MPMX19_06501 0.39 -0.1
285,735 + MPMX19_06501 0.46 +0.7
285,735 + MPMX19_06501 0.46 +1.7
285,735 + MPMX19_06501 0.46 +0.4
285,735 + MPMX19_06501 0.46 +0.2
285,735 + MPMX19_06501 0.46 +1.0
285,736 - MPMX19_06501 0.46 +0.3
285,736 - MPMX19_06501 0.46 -0.9
285,736 - MPMX19_06501 0.46 -0.5
285,736 - MPMX19_06501 0.46 -1.1
285,736 - MPMX19_06501 0.46 -0.4
285,736 - MPMX19_06501 0.46 -0.7
285,990 + MPMX19_06501 0.68 -0.9
285,990 + MPMX19_06501 0.68 -1.0
285,990 + MPMX19_06501 0.68 +0.7
285,991 - MPMX19_06501 0.68 +0.3
285,991 - MPMX19_06501 0.68 +0.3
285,991 - MPMX19_06501 0.68 -0.6
285,991 - MPMX19_06501 0.68 -0.0
286,122 + MPMX19_06501 0.79 +0.2
286,122 + MPMX19_06501 0.79 -0.3
286,122 + MPMX19_06501 0.79 -0.9
286,122 + MPMX19_06501 0.79 +0.2
286,122 + MPMX19_06501 0.79 -0.6
286,122 + MPMX19_06501 0.79 +0.6
286,122 + MPMX19_06501 0.79 +0.2
286,122 + MPMX19_06501 0.79 +0.0
286,122 + MPMX19_06501 0.79 -0.2
286,123 - MPMX19_06501 0.79 +0.9
286,123 - MPMX19_06501 0.79 +0.3
286,123 - MPMX19_06501 0.79 +1.5
286,123 - MPMX19_06501 0.79 +0.1
286,123 - MPMX19_06501 0.79 -1.0
286,123 - MPMX19_06501 0.79 -0.9
286,123 - MPMX19_06501 0.79 -0.6
286,206 + MPMX19_06501 0.86 +0.2
286,207 - MPMX19_06501 0.86 -1.3
286,397 + +0.7
286,397 + -0.1
286,398 - -0.4
286,398 - -0.5
286,398 - +1.0
286,560 - -0.1
286,612 + -2.2
286,613 - -0.9
286,746 - MPMX19_06502 0.12 -0.6
286,919 + MPMX19_06502 0.23 +0.5
286,919 + MPMX19_06502 0.23 -0.5
286,919 + MPMX19_06502 0.23 -0.6
286,919 + MPMX19_06502 0.23 +1.2
286,920 - MPMX19_06502 0.23 +0.8
286,920 - MPMX19_06502 0.23 +0.5
286,920 - MPMX19_06502 0.23 +1.2
286,920 - MPMX19_06502 0.23 -0.7
286,920 - MPMX19_06502 0.23 +0.7
286,920 - MPMX19_06502 0.23 -1.0
286,920 - MPMX19_06502 0.23 -0.2
286,920 - MPMX19_06502 0.23 -0.0
287,102 + MPMX19_06502 0.34 +1.3
287,102 + MPMX19_06502 0.34 +0.2
287,103 - MPMX19_06502 0.34 -0.7
287,103 - MPMX19_06502 0.34 -0.6
287,103 - MPMX19_06502 0.34 +0.2
287,103 - MPMX19_06502 0.34 +0.5
287,525 + MPMX19_06502 0.60 -0.8
287,525 + MPMX19_06502 0.60 -0.1
287,525 + MPMX19_06502 0.60 +1.7
287,525 + MPMX19_06502 0.60 -0.8
287,525 + MPMX19_06502 0.60 -0.9
287,525 + MPMX19_06502 0.60 -0.1
287,525 + MPMX19_06502 0.60 +0.9
287,525 + MPMX19_06502 0.60 +0.6
287,525 + MPMX19_06502 0.60 -1.1
287,525 + MPMX19_06502 0.60 +0.8
287,526 - MPMX19_06502 0.60 -0.8
287,526 - MPMX19_06502 0.60 +0.3
287,526 - MPMX19_06502 0.60 -0.0
287,526 - MPMX19_06502 0.60 +0.1
287,526 - MPMX19_06502 0.60 +0.4
287,526 - MPMX19_06502 0.60 +0.6
287,574 - MPMX19_06502 0.63 -1.9
287,586 - MPMX19_06502 0.64 -0.3
287,586 - MPMX19_06502 0.64 +0.4
288,195 + +0.1
288,195 + +0.1
288,644 - -0.6
288,968 + -1.4
288,968 + -0.3
289,025 + -0.5
289,121 - -0.9
289,121 - -0.6
289,121 - -0.9

Or see this region's nucleotide sequence