Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06460

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06460 and MPMX19_06461 overlap by 1 nucleotides MPMX19_06460: MPMX19_06460 - DNA-invertase hin, at 241,947 to 242,504 _06460 MPMX19_06461: MPMX19_06461 - Tn3 family transposase ISXc4, at 242,504 to 245,506 _06461 Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1 2at 240.991 kb on - strandat 241.011 kb on - strandat 241.040 kb on + strandat 241.040 kb on + strandat 241.041 kb on - strandat 241.055 kb on - strandat 241.115 kb on + strandat 241.116 kb on - strandat 241.116 kb on - strandat 241.117 kb on + strandat 241.117 kb on + strandat 241.117 kb on + strandat 241.117 kb on + strandat 241.118 kb on - strandat 241.220 kb on + strandat 241.221 kb on - strandat 241.273 kb on - strandat 241.273 kb on - strandat 241.273 kb on - strandat 241.273 kb on - strandat 241.273 kb on - strandat 241.291 kb on + strandat 241.291 kb on + strandat 241.292 kb on - strandat 241.302 kb on + strandat 241.303 kb on - strandat 241.303 kb on - strandat 241.316 kb on - strandat 241.417 kb on + strandat 241.417 kb on + strandat 241.442 kb on + strandat 241.481 kb on + strandat 241.499 kb on + strandat 241.499 kb on + strandat 241.499 kb on + strandat 241.499 kb on + strandat 241.500 kb on - strandat 241.579 kb on - strandat 241.617 kb on + strandat 241.638 kb on - strandat 241.638 kb on - strandat 241.829 kb on + strandat 241.829 kb on + strandat 241.830 kb on - strandat 241.834 kb on - strandat 241.834 kb on - strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.837 kb on + strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.838 kb on - strandat 241.839 kb on + strandat 241.839 kb on + strandat 241.840 kb on - strandat 241.840 kb on - strandat 241.840 kb on - strandat 241.840 kb on - strandat 241.840 kb on - strandat 241.840 kb on - strandat 241.840 kb on - strandat 241.840 kb on - strandat 241.840 kb on - strandat 241.850 kb on + strandat 241.850 kb on + strandat 241.851 kb on - strandat 241.870 kb on - strandat 241.870 kb on - strandat 241.899 kb on - strandat 241.911 kb on + strandat 241.926 kb on + strandat 241.926 kb on + strandat 241.926 kb on + strandat 241.926 kb on + strandat 241.926 kb on + strandat 241.927 kb on - strandat 241.946 kb on + strandat 241.946 kb on + strandat 241.947 kb on - strandat 241.947 kb on - strandat 241.954 kb on + strandat 241.955 kb on - strandat 241.955 kb on - strandat 241.955 kb on - strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.956 kb on + strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 241.957 kb on - strandat 242.014 kb on + strand, within MPMX19_06460at 242.014 kb on + strand, within MPMX19_06460at 242.015 kb on - strand, within MPMX19_06460at 242.358 kb on + strand, within MPMX19_06460at 242.358 kb on + strand, within MPMX19_06460at 242.358 kb on + strand, within MPMX19_06460at 242.358 kb on + strand, within MPMX19_06460at 242.358 kb on + strand, within MPMX19_06460at 242.359 kb on - strand, within MPMX19_06460at 242.472 kb on + strandat 242.472 kb on + strandat 242.472 kb on + strandat 242.473 kb on - strandat 242.588 kb on + strandat 242.589 kb on - strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.786 kb on + strandat 242.787 kb on - strandat 242.787 kb on - strandat 242.787 kb on - strandat 242.787 kb on - strandat 242.787 kb on - strandat 242.787 kb on - strandat 242.837 kb on + strand, within MPMX19_06461at 242.894 kb on + strand, within MPMX19_06461at 242.894 kb on + strand, within MPMX19_06461at 242.894 kb on + strand, within MPMX19_06461at 242.894 kb on + strand, within MPMX19_06461at 242.894 kb on + strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 242.895 kb on - strand, within MPMX19_06461at 243.022 kb on + strand, within MPMX19_06461at 243.023 kb on - strand, within MPMX19_06461at 243.335 kb on - strand, within MPMX19_06461

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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240,991 - +0.1
241,011 - -0.3
241,040 + +0.6
241,040 + -0.7
241,041 - +1.4
241,055 - -1.0
241,115 + +1.7
241,116 - -0.0
241,116 - -0.9
241,117 + -1.3
241,117 + -1.4
241,117 + +0.2
241,117 + -0.6
241,118 - -0.3
241,220 + -1.7
241,221 - -1.1
241,273 - -0.7
241,273 - -0.7
241,273 - -0.3
241,273 - -0.7
241,273 - -0.7
241,291 + +1.0
241,291 + +0.3
241,292 - -0.3
241,302 + -0.5
241,303 - +0.5
241,303 - -0.1
241,316 - -0.7
241,417 + -0.1
241,417 + +1.6
241,442 + +0.3
241,481 + -1.0
241,499 + -1.0
241,499 + -0.1
241,499 + +0.9
241,499 + -0.7
241,500 - +0.1
241,579 - -1.2
241,617 + -0.4
241,638 - -0.3
241,638 - -1.0
241,829 + +0.7
241,829 + -1.4
241,830 - +1.2
241,834 - +0.4
241,834 - +1.3
241,837 + -0.9
241,837 + -0.6
241,837 + +0.9
241,837 + -2.4
241,837 + -1.3
241,837 + +1.3
241,837 + -0.2
241,837 + +0.6
241,837 + -1.5
241,837 + +1.2
241,837 + -0.3
241,838 - +0.2
241,838 - -0.1
241,838 - +0.1
241,838 - +1.4
241,838 - +1.3
241,838 - -1.3
241,838 - +0.5
241,838 - -1.6
241,838 - +0.0
241,838 - +0.5
241,838 - +0.0
241,838 - -1.7
241,838 - +0.8
241,839 + -0.4
241,839 + -0.1
241,840 - +1.6
241,840 - +0.1
241,840 - -0.1
241,840 - -1.4
241,840 - -0.6
241,840 - +0.3
241,840 - +0.6
241,840 - +0.4
241,840 - -0.9
241,850 + -1.6
241,850 + +0.6
241,851 - -0.4
241,870 - -0.7
241,870 - -0.1
241,899 - +0.5
241,911 + +0.3
241,926 + -1.1
241,926 + -0.1
241,926 + -1.0
241,926 + -1.7
241,926 + -0.6
241,927 - +0.9
241,946 + -0.1
241,946 + +0.3
241,947 - -0.4
241,947 - +0.6
241,954 + -0.8
241,955 - -0.4
241,955 - -0.6
241,955 - +0.1
241,956 + -0.3
241,956 + +1.1
241,956 + -0.1
241,956 + +0.6
241,956 + +0.6
241,956 + +0.9
241,956 + -0.8
241,956 + -0.2
241,956 + -1.1
241,956 + +0.3
241,956 + -1.4
241,956 + +0.1
241,956 + -0.9
241,957 - +0.3
241,957 - -0.2
241,957 - +0.4
241,957 - +0.2
241,957 - -1.0
241,957 - -0.2
241,957 - -0.3
241,957 - +2.1
241,957 - -1.4
241,957 - -0.4
241,957 - +0.7
241,957 - +0.3
241,957 - -0.4
241,957 - +0.1
241,957 - -0.4
241,957 - -0.3
241,957 - +0.3
241,957 - +0.2
241,957 - +1.2
241,957 - -0.7
241,957 - -0.2
242,014 + MPMX19_06460 0.12 -1.8
242,014 + MPMX19_06460 0.12 +0.1
242,015 - MPMX19_06460 0.12 -0.4
242,358 + MPMX19_06460 0.74 -1.0
242,358 + MPMX19_06460 0.74 -0.7
242,358 + MPMX19_06460 0.74 -0.7
242,358 + MPMX19_06460 0.74 -1.8
242,358 + MPMX19_06460 0.74 -1.1
242,359 - MPMX19_06460 0.74 -0.4
242,472 + -0.6
242,472 + +0.1
242,472 + -0.2
242,473 - +1.4
242,588 + -0.8
242,589 - -0.4
242,786 + +0.9
242,786 + +1.2
242,786 + -0.1
242,786 + +0.5
242,786 + -0.7
242,786 + -0.6
242,786 + -0.9
242,786 + -1.2
242,786 + -0.1
242,786 + -0.1
242,786 + +1.9
242,786 + -0.9
242,786 + +0.1
242,786 + -1.1
242,787 - +0.3
242,787 - -1.1
242,787 - -1.0
242,787 - +1.2
242,787 - +0.2
242,787 - -0.1
242,837 + MPMX19_06461 0.11 +0.3
242,894 + MPMX19_06461 0.13 -0.3
242,894 + MPMX19_06461 0.13 +1.2
242,894 + MPMX19_06461 0.13 -1.4
242,894 + MPMX19_06461 0.13 -1.0
242,894 + MPMX19_06461 0.13 -0.6
242,895 - MPMX19_06461 0.13 +2.1
242,895 - MPMX19_06461 0.13 -0.9
242,895 - MPMX19_06461 0.13 -1.0
242,895 - MPMX19_06461 0.13 -0.3
242,895 - MPMX19_06461 0.13 -0.0
242,895 - MPMX19_06461 0.13 -0.3
242,895 - MPMX19_06461 0.13 -1.5
242,895 - MPMX19_06461 0.13 +0.6
242,895 - MPMX19_06461 0.13 -0.9
243,022 + MPMX19_06461 0.17 +0.7
243,023 - MPMX19_06461 0.17 -0.7
243,335 - MPMX19_06461 0.28 -0.7

Or see this region's nucleotide sequence