Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06455 and MPMX19_06456 are separated by 57 nucleotides MPMX19_06456 and MPMX19_06457 are separated by 432 nucleotides MPMX19_06457 and MPMX19_06458 are separated by 16 nucleotides
MPMX19_06455: MPMX19_06455 - Tyrosine recombinase XerC, at 230,586 to 231,743
_06455
MPMX19_06456: MPMX19_06456 - hypothetical protein, at 231,801 to 232,160
_06456
MPMX19_06457: MPMX19_06457 - hypothetical protein, at 232,593 to 234,149
_06457
MPMX19_06458: MPMX19_06458 - hypothetical protein, at 234,166 to 238,191
_06458
Position (kb) 232
233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.763 kb on + strand at 231.802 kb on + strand at 231.802 kb on + strand at 231.803 kb on - strand at 231.803 kb on - strand at 231.803 kb on - strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.815 kb on - strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.833 kb on - strand at 231.833 kb on - strand at 231.833 kb on - strand at 231.898 kb on + strand, within MPMX19_06456 at 231.898 kb on + strand, within MPMX19_06456 at 231.899 kb on - strand, within MPMX19_06456 at 232.170 kb on + strand at 232.171 kb on - strand at 232.209 kb on + strand at 232.209 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.338 kb on - strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.426 kb on + strand at 232.426 kb on + strand at 232.426 kb on + strand at 232.427 kb on - strand at 232.427 kb on - strand at 232.427 kb on - strand at 232.465 kb on + strand at 232.487 kb on + strand at 232.487 kb on + strand at 232.506 kb on + strand at 232.506 kb on + strand at 232.506 kb on + strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.508 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.604 kb on - strand at 232.604 kb on - strand at 232.640 kb on + strand at 232.640 kb on + strand at 232.640 kb on + strand at 232.641 kb on - strand at 232.641 kb on - strand at 232.641 kb on - strand at 232.652 kb on + strand at 232.653 kb on - strand at 232.653 kb on - strand at 232.653 kb on - strand at 232.686 kb on + strand at 232.686 kb on + strand at 232.687 kb on - strand at 232.845 kb on + strand, within MPMX19_06457 at 232.846 kb on - strand, within MPMX19_06457 at 232.846 kb on - strand, within MPMX19_06457 at 233.209 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.232 kb on - strand, within MPMX19_06457 at 233.232 kb on - strand, within MPMX19_06457 at 233.232 kb on - strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.314 kb on - strand, within MPMX19_06457 at 233.314 kb on - strand, within MPMX19_06457 at 233.314 kb on - strand, within MPMX19_06457 at 233.314 kb on - strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.575 kb on - strand, within MPMX19_06457 at 233.575 kb on - strand, within MPMX19_06457 at 233.853 kb on + strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 234.008 kb on + strand at 234.008 kb on + strand at 234.008 kb on + strand at 234.008 kb on + strand at 234.009 kb on - strand at 234.009 kb on - strand at 234.093 kb on - strand at 234.188 kb on + strand at 234.406 kb on + strand at 234.406 kb on + strand at 234.406 kb on + strand at 234.406 kb on + strand at 234.406 kb on + strand at 234.407 kb on - strand at 234.407 kb on - strand at 234.407 kb on - strand at 234.407 kb on - strand at 234.496 kb on + strand at 234.497 kb on - strand at 234.497 kb on - strand at 234.581 kb on - strand, within MPMX19_06458 at 234.581 kb on - strand, within MPMX19_06458 at 234.664 kb on + strand, within MPMX19_06458 at 234.664 kb on + strand, within MPMX19_06458 at 234.664 kb on + strand, within MPMX19_06458 at 234.664 kb on + strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.941 kb on + strand, within MPMX19_06458 at 234.941 kb on + strand, within MPMX19_06458 at 235.094 kb on + strand, within MPMX19_06458 at 235.095 kb on - strand, within MPMX19_06458 at 235.095 kb on - strand, within MPMX19_06458 at 235.095 kb on - strand, within MPMX19_06458 at 235.119 kb on + strand, within MPMX19_06458 at 235.119 kb on + strand, within MPMX19_06458 at 235.120 kb on - strand, within MPMX19_06458 at 235.120 kb on - strand, within MPMX19_06458 at 235.120 kb on - strand, within MPMX19_06458 at 235.120 kb on - strand, within MPMX19_06458
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 231,669 + +0.1 231,669 + -0.7 231,669 + -0.1 231,669 + +0.3 231,669 + +0.9 231,670 - -0.4 231,670 - -1.3 231,670 - -0.2 231,670 - +0.5 231,670 - -0.9 231,670 - -2.3 231,670 - +1.3 231,670 - +1.5 231,670 - +0.3 231,763 + -0.7 231,802 + +0.6 231,802 + +1.1 231,803 - +1.1 231,803 - -0.7 231,803 - +0.0 231,814 + +1.9 231,814 + -1.8 231,814 + -0.9 231,814 + +0.1 231,815 - -1.9 231,826 + +0.1 231,826 + -1.0 231,826 + -1.0 231,826 + -0.9 231,826 + -0.3 231,826 + -0.1 231,826 + -0.5 231,826 + +0.2 231,826 + -2.6 231,826 + +0.5 231,827 - -1.5 231,827 - +1.5 231,827 - -0.1 231,827 - +1.2 231,827 - -0.0 231,827 - +1.0 231,827 - +0.4 231,827 - -0.4 231,827 - -0.7 231,827 - -1.8 231,827 - -0.4 231,827 - -0.1 231,832 + +2.1 231,832 + +1.9 231,832 + -0.3 231,832 + -0.6 231,832 + -0.7 231,833 - -0.1 231,833 - +0.4 231,833 - +0.3 231,898 + MPMX19_06456 0.27 -0.0 231,898 + MPMX19_06456 0.27 -0.6 231,899 - MPMX19_06456 0.27 +1.4 232,170 + +0.4 232,171 - -0.3 232,209 + -0.2 232,209 + -0.2 232,288 + -0.5 232,288 + -1.4 232,338 - -1.0 232,387 + -1.4 232,387 + +0.3 232,387 + +1.7 232,387 + -0.1 232,387 + +0.0 232,387 + -0.1 232,387 + -0.1 232,387 + -0.9 232,388 - -0.8 232,388 - -0.5 232,388 - +0.0 232,388 - -0.0 232,388 - -1.0 232,388 - -1.1 232,388 - -2.3 232,388 - -1.1 232,388 - -0.2 232,388 - +0.0 232,388 - -0.1 232,426 + -0.0 232,426 + -0.2 232,426 + +0.5 232,427 - -0.7 232,427 - -2.1 232,427 - -0.5 232,465 + -0.8 232,487 + -0.8 232,487 + -0.7 232,506 + +1.0 232,506 + -0.9 232,506 + +0.6 232,507 - -0.9 232,507 - -2.0 232,507 - -1.2 232,507 - +1.5 232,507 - -2.3 232,507 - -1.1 232,507 - +0.3 232,507 - -0.6 232,507 - -0.5 232,508 + -1.7 232,598 + -0.6 232,598 + -0.9 232,598 + -0.1 232,604 - +0.9 232,604 - -0.3 232,640 + +1.7 232,640 + +0.5 232,640 + -1.5 232,641 - -0.5 232,641 - -1.4 232,641 - -0.2 232,652 + +1.2 232,653 - -0.2 232,653 - +1.2 232,653 - -1.0 232,686 + -0.9 232,686 + -0.6 232,687 - -1.0 232,845 + MPMX19_06457 0.16 -1.1 232,846 - MPMX19_06457 0.16 +0.7 232,846 - MPMX19_06457 0.16 -1.0 233,209 + MPMX19_06457 0.40 +1.9 233,231 + MPMX19_06457 0.41 -0.2 233,231 + MPMX19_06457 0.41 -0.1 233,231 + MPMX19_06457 0.41 +0.9 233,231 + MPMX19_06457 0.41 -0.7 233,231 + MPMX19_06457 0.41 +0.6 233,231 + MPMX19_06457 0.41 -1.0 233,231 + MPMX19_06457 0.41 -1.8 233,232 - MPMX19_06457 0.41 -0.4 233,232 - MPMX19_06457 0.41 +0.9 233,232 - MPMX19_06457 0.41 +0.3 233,313 + MPMX19_06457 0.46 +0.4 233,313 + MPMX19_06457 0.46 -1.3 233,313 + MPMX19_06457 0.46 -0.6 233,313 + MPMX19_06457 0.46 +0.3 233,313 + MPMX19_06457 0.46 +0.2 233,314 - MPMX19_06457 0.46 -1.3 233,314 - MPMX19_06457 0.46 -0.9 233,314 - MPMX19_06457 0.46 +0.3 233,314 - MPMX19_06457 0.46 +0.3 233,319 + MPMX19_06457 0.47 -2.0 233,319 + MPMX19_06457 0.47 -0.5 233,319 + MPMX19_06457 0.47 -1.1 233,319 + MPMX19_06457 0.47 -0.3 233,319 + MPMX19_06457 0.47 -0.2 233,319 + MPMX19_06457 0.47 -0.9 233,319 + MPMX19_06457 0.47 -1.7 233,319 + MPMX19_06457 0.47 +1.0 233,319 + MPMX19_06457 0.47 -1.1 233,319 + MPMX19_06457 0.47 +1.1 233,319 + MPMX19_06457 0.47 -0.7 233,319 + MPMX19_06457 0.47 +0.2 233,319 + MPMX19_06457 0.47 -1.7 233,319 + MPMX19_06457 0.47 -0.2 233,319 + MPMX19_06457 0.47 -1.0 233,319 + MPMX19_06457 0.47 +1.0 233,319 + MPMX19_06457 0.47 -0.1 233,319 + MPMX19_06457 0.47 +0.3 233,320 - MPMX19_06457 0.47 -1.2 233,320 - MPMX19_06457 0.47 -0.4 233,320 - MPMX19_06457 0.47 -0.4 233,320 - MPMX19_06457 0.47 -0.2 233,320 - MPMX19_06457 0.47 +0.3 233,320 - MPMX19_06457 0.47 +0.3 233,320 - MPMX19_06457 0.47 +1.2 233,320 - MPMX19_06457 0.47 +0.6 233,320 - MPMX19_06457 0.47 -0.2 233,320 - MPMX19_06457 0.47 +0.6 233,320 - MPMX19_06457 0.47 +0.9 233,320 - MPMX19_06457 0.47 -1.2 233,320 - MPMX19_06457 0.47 +0.0 233,360 + MPMX19_06457 0.49 +0.3 233,360 + MPMX19_06457 0.49 +0.0 233,360 + MPMX19_06457 0.49 -0.0 233,360 + MPMX19_06457 0.49 -1.1 233,360 + MPMX19_06457 0.49 -1.3 233,360 + MPMX19_06457 0.49 -0.4 233,360 + MPMX19_06457 0.49 +0.5 233,360 + MPMX19_06457 0.49 +0.0 233,360 + MPMX19_06457 0.49 -1.1 233,361 - MPMX19_06457 0.49 -0.0 233,361 - MPMX19_06457 0.49 -0.5 233,361 - MPMX19_06457 0.49 -0.3 233,361 - MPMX19_06457 0.49 -0.1 233,361 - MPMX19_06457 0.49 -0.0 233,361 - MPMX19_06457 0.49 +0.5 233,361 - MPMX19_06457 0.49 -0.2 233,361 - MPMX19_06457 0.49 -0.3 233,361 - MPMX19_06457 0.49 +0.6 233,361 - MPMX19_06457 0.49 +0.6 233,361 - MPMX19_06457 0.49 -0.3 233,361 - MPMX19_06457 0.49 +0.1 233,361 - MPMX19_06457 0.49 +0.6 233,361 - MPMX19_06457 0.49 +0.4 233,361 - MPMX19_06457 0.49 +0.1 233,361 - MPMX19_06457 0.49 -1.0 233,575 - MPMX19_06457 0.63 +0.3 233,575 - MPMX19_06457 0.63 -2.1 233,853 + MPMX19_06457 0.81 -0.1 233,854 - MPMX19_06457 0.81 +1.6 233,854 - MPMX19_06457 0.81 +0.8 233,854 - MPMX19_06457 0.81 -0.1 233,854 - MPMX19_06457 0.81 -0.0 233,854 - MPMX19_06457 0.81 -0.3 234,008 + -1.3 234,008 + -0.7 234,008 + -2.0 234,008 + -0.7 234,009 - +1.3 234,009 - -1.3 234,093 - -1.0 234,188 + +0.9 234,406 + -1.7 234,406 + -1.6 234,406 + +0.6 234,406 + -0.3 234,406 + -0.3 234,407 - -0.2 234,407 - +1.6 234,407 - +0.9 234,407 - +0.5 234,496 + -1.1 234,497 - +0.7 234,497 - -0.8 234,581 - MPMX19_06458 0.10 +0.9 234,581 - MPMX19_06458 0.10 -1.8 234,664 + MPMX19_06458 0.12 -0.8 234,664 + MPMX19_06458 0.12 -1.4 234,664 + MPMX19_06458 0.12 +2.2 234,664 + MPMX19_06458 0.12 +0.2 234,665 - MPMX19_06458 0.12 -1.4 234,665 - MPMX19_06458 0.12 -1.8 234,665 - MPMX19_06458 0.12 -1.4 234,665 - MPMX19_06458 0.12 -0.4 234,665 - MPMX19_06458 0.12 +0.8 234,941 + MPMX19_06458 0.19 -0.3 234,941 + MPMX19_06458 0.19 -0.2 235,094 + MPMX19_06458 0.23 +1.1 235,095 - MPMX19_06458 0.23 -0.3 235,095 - MPMX19_06458 0.23 -1.2 235,095 - MPMX19_06458 0.23 +0.6 235,119 + MPMX19_06458 0.24 -0.7 235,119 + MPMX19_06458 0.24 -0.0 235,120 - MPMX19_06458 0.24 +1.2 235,120 - MPMX19_06458 0.24 -0.7 235,120 - MPMX19_06458 0.24 -0.8 235,120 - MPMX19_06458 0.24 +1.4
Or see this region's nucleotide sequence