Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06452

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06451 and MPMX19_06452 are separated by 91 nucleotidesMPMX19_06452 and MPMX19_06453 overlap by 4 nucleotidesMPMX19_06453 and MPMX19_06454 overlap by 8 nucleotides MPMX19_06451: MPMX19_06451 - hypothetical protein, at 225,187 to 226,161 _06451 MPMX19_06452: MPMX19_06452 - hypothetical protein, at 226,253 to 227,740 _06452 MPMX19_06453: MPMX19_06453 - hypothetical protein, at 227,737 to 228,612 _06453 MPMX19_06454: MPMX19_06454 - hypothetical protein, at 228,605 to 230,290 _06454 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 225.358 kb on + strand, within MPMX19_06451at 225.359 kb on - strand, within MPMX19_06451at 225.359 kb on - strand, within MPMX19_06451at 225.359 kb on - strand, within MPMX19_06451at 225.390 kb on + strand, within MPMX19_06451at 225.391 kb on - strand, within MPMX19_06451at 225.391 kb on - strand, within MPMX19_06451at 225.403 kb on + strand, within MPMX19_06451at 225.403 kb on + strand, within MPMX19_06451at 225.403 kb on + strand, within MPMX19_06451at 225.403 kb on + strand, within MPMX19_06451at 225.403 kb on + strand, within MPMX19_06451at 225.403 kb on + strand, within MPMX19_06451at 225.404 kb on - strand, within MPMX19_06451at 225.408 kb on + strand, within MPMX19_06451at 225.408 kb on + strand, within MPMX19_06451at 225.408 kb on + strand, within MPMX19_06451at 225.409 kb on - strand, within MPMX19_06451at 225.409 kb on - strand, within MPMX19_06451at 225.482 kb on + strand, within MPMX19_06451at 225.483 kb on - strand, within MPMX19_06451at 225.487 kb on + strand, within MPMX19_06451at 225.487 kb on + strand, within MPMX19_06451at 225.487 kb on + strand, within MPMX19_06451at 225.487 kb on + strand, within MPMX19_06451at 225.488 kb on - strand, within MPMX19_06451at 225.488 kb on - strand, within MPMX19_06451at 225.488 kb on - strand, within MPMX19_06451at 225.488 kb on - strand, within MPMX19_06451at 225.488 kb on - strand, within MPMX19_06451at 225.496 kb on + strand, within MPMX19_06451at 225.496 kb on + strand, within MPMX19_06451at 225.496 kb on + strand, within MPMX19_06451at 225.496 kb on + strand, within MPMX19_06451at 225.496 kb on + strand, within MPMX19_06451at 225.497 kb on - strand, within MPMX19_06451at 225.497 kb on - strand, within MPMX19_06451at 225.497 kb on - strand, within MPMX19_06451at 225.497 kb on - strand, within MPMX19_06451at 225.529 kb on - strand, within MPMX19_06451at 225.586 kb on - strand, within MPMX19_06451at 225.610 kb on + strand, within MPMX19_06451at 225.610 kb on + strand, within MPMX19_06451at 225.640 kb on + strand, within MPMX19_06451at 225.641 kb on - strand, within MPMX19_06451at 225.667 kb on + strand, within MPMX19_06451at 225.667 kb on + strand, within MPMX19_06451at 225.667 kb on + strand, within MPMX19_06451at 225.667 kb on + strand, within MPMX19_06451at 225.668 kb on - strand, within MPMX19_06451at 225.668 kb on - strand, within MPMX19_06451at 225.668 kb on - strand, within MPMX19_06451at 225.688 kb on + strand, within MPMX19_06451at 225.688 kb on + strand, within MPMX19_06451at 225.688 kb on + strand, within MPMX19_06451at 225.790 kb on + strand, within MPMX19_06451at 225.790 kb on + strand, within MPMX19_06451at 225.790 kb on + strand, within MPMX19_06451at 225.790 kb on + strand, within MPMX19_06451at 225.791 kb on - strand, within MPMX19_06451at 225.875 kb on + strand, within MPMX19_06451at 225.876 kb on - strand, within MPMX19_06451at 225.876 kb on - strand, within MPMX19_06451at 225.904 kb on + strand, within MPMX19_06451at 225.904 kb on + strand, within MPMX19_06451at 225.904 kb on + strand, within MPMX19_06451at 225.904 kb on + strand, within MPMX19_06451at 225.904 kb on + strand, within MPMX19_06451at 225.905 kb on - strand, within MPMX19_06451at 225.905 kb on - strand, within MPMX19_06451at 225.905 kb on - strand, within MPMX19_06451at 225.905 kb on - strand, within MPMX19_06451at 225.905 kb on - strand, within MPMX19_06451at 225.905 kb on - strand, within MPMX19_06451at 225.905 kb on - strand, within MPMX19_06451at 225.905 kb on - strand, within MPMX19_06451at 225.906 kb on + strand, within MPMX19_06451at 225.906 kb on + strand, within MPMX19_06451at 225.907 kb on - strand, within MPMX19_06451at 225.907 kb on - strand, within MPMX19_06451at 225.907 kb on - strand, within MPMX19_06451at 226.110 kb on - strandat 226.137 kb on + strandat 226.137 kb on + strandat 226.137 kb on + strandat 226.137 kb on + strandat 226.138 kb on - strandat 226.138 kb on - strandat 226.159 kb on + strandat 226.159 kb on + strandat 226.160 kb on - strandat 226.216 kb on - strandat 226.216 kb on - strandat 226.216 kb on - strandat 226.234 kb on - strandat 226.242 kb on - strandat 226.242 kb on - strandat 226.376 kb on + strandat 226.394 kb on + strandat 226.395 kb on - strandat 226.395 kb on - strandat 226.395 kb on - strandat 226.599 kb on + strand, within MPMX19_06452at 226.599 kb on + strand, within MPMX19_06452at 226.600 kb on - strand, within MPMX19_06452at 226.600 kb on - strand, within MPMX19_06452at 226.600 kb on - strand, within MPMX19_06452at 226.600 kb on - strand, within MPMX19_06452at 226.632 kb on + strand, within MPMX19_06452at 226.632 kb on + strand, within MPMX19_06452at 226.633 kb on - strand, within MPMX19_06452at 226.667 kb on + strand, within MPMX19_06452at 226.668 kb on - strand, within MPMX19_06452at 226.774 kb on + strand, within MPMX19_06452at 226.774 kb on + strand, within MPMX19_06452at 226.775 kb on - strand, within MPMX19_06452at 226.775 kb on - strand, within MPMX19_06452at 226.820 kb on + strand, within MPMX19_06452at 226.820 kb on + strand, within MPMX19_06452at 226.821 kb on - strand, within MPMX19_06452at 226.821 kb on - strand, within MPMX19_06452at 226.821 kb on - strand, within MPMX19_06452at 226.821 kb on - strand, within MPMX19_06452at 226.821 kb on - strand, within MPMX19_06452at 226.821 kb on - strand, within MPMX19_06452at 227.000 kb on + strand, within MPMX19_06452at 227.000 kb on + strand, within MPMX19_06452at 227.000 kb on + strand, within MPMX19_06452at 227.001 kb on - strand, within MPMX19_06452at 227.001 kb on - strand, within MPMX19_06452at 227.142 kb on + strand, within MPMX19_06452at 227.142 kb on + strand, within MPMX19_06452at 227.143 kb on - strand, within MPMX19_06452at 227.269 kb on + strand, within MPMX19_06452at 227.403 kb on + strand, within MPMX19_06452at 227.403 kb on + strand, within MPMX19_06452at 227.404 kb on - strand, within MPMX19_06452at 227.404 kb on - strand, within MPMX19_06452at 227.404 kb on - strand, within MPMX19_06452at 227.404 kb on - strand, within MPMX19_06452at 227.404 kb on - strand, within MPMX19_06452at 227.404 kb on - strand, within MPMX19_06452at 227.404 kb on - strand, within MPMX19_06452at 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.614 kb on - strandat 227.634 kb on + strandat 227.634 kb on + strandat 227.635 kb on - strandat 227.635 kb on - strandat 227.635 kb on - strandat 227.635 kb on - strandat 227.707 kb on + strandat 227.707 kb on + strandat 227.707 kb on + strandat 227.707 kb on + strandat 227.708 kb on - strandat 227.708 kb on - strandat 227.708 kb on - strandat 227.708 kb on - strandat 227.708 kb on - strandat 227.708 kb on - strandat 227.708 kb on - strandat 227.728 kb on + strandat 227.728 kb on + strandat 227.728 kb on + strandat 227.728 kb on + strandat 227.729 kb on - strandat 227.729 kb on - strandat 227.729 kb on - strandat 227.729 kb on - strandat 227.729 kb on - strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.762 kb on + strandat 227.763 kb on - strandat 227.763 kb on - strandat 227.763 kb on - strandat 227.763 kb on - strandat 227.763 kb on - strandat 227.763 kb on - strandat 228.009 kb on + strand, within MPMX19_06453at 228.009 kb on + strand, within MPMX19_06453at 228.010 kb on - strand, within MPMX19_06453at 228.278 kb on + strand, within MPMX19_06453at 228.278 kb on + strand, within MPMX19_06453at 228.278 kb on + strand, within MPMX19_06453at 228.278 kb on + strand, within MPMX19_06453at 228.278 kb on + strand, within MPMX19_06453at 228.278 kb on + strand, within MPMX19_06453at 228.278 kb on + strand, within MPMX19_06453at 228.278 kb on + strand, within MPMX19_06453at 228.279 kb on - strand, within MPMX19_06453at 228.279 kb on - strand, within MPMX19_06453at 228.279 kb on - strand, within MPMX19_06453at 228.279 kb on - strand, within MPMX19_06453at 228.279 kb on - strand, within MPMX19_06453at 228.279 kb on - strand, within MPMX19_06453at 228.279 kb on - strand, within MPMX19_06453at 228.279 kb on - strand, within MPMX19_06453at 228.507 kb on - strand, within MPMX19_06453at 228.596 kb on + strandat 228.597 kb on - strandat 228.597 kb on - strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.618 kb on - strandat 228.618 kb on - strandat 228.618 kb on - strandat 228.618 kb on - strandat 228.618 kb on - strandat 228.618 kb on - strandat 228.630 kb on + strandat 228.630 kb on + strandat 228.630 kb on + strandat 228.630 kb on + strandat 228.631 kb on - strandat 228.631 kb on - strandat 228.652 kb on + strandat 228.653 kb on - strandat 228.653 kb on - strandat 228.667 kb on + strandat 228.684 kb on + strandat 228.684 kb on + strandat 228.684 kb on + strandat 228.684 kb on + strandat 228.685 kb on - strandat 228.685 kb on - strandat 228.685 kb on - strandat 228.685 kb on - strandat 228.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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225,358 + MPMX19_06451 0.18 -1.3
225,359 - MPMX19_06451 0.18 -2.3
225,359 - MPMX19_06451 0.18 -0.2
225,359 - MPMX19_06451 0.18 -0.2
225,390 + MPMX19_06451 0.21 -0.6
225,391 - MPMX19_06451 0.21 -0.7
225,391 - MPMX19_06451 0.21 -1.6
225,403 + MPMX19_06451 0.22 -1.1
225,403 + MPMX19_06451 0.22 -1.4
225,403 + MPMX19_06451 0.22 -0.8
225,403 + MPMX19_06451 0.22 +1.0
225,403 + MPMX19_06451 0.22 -2.5
225,403 + MPMX19_06451 0.22 +0.7
225,404 - MPMX19_06451 0.22 -0.4
225,408 + MPMX19_06451 0.23 -1.2
225,408 + MPMX19_06451 0.23 +0.9
225,408 + MPMX19_06451 0.23 -1.0
225,409 - MPMX19_06451 0.23 -0.2
225,409 - MPMX19_06451 0.23 -1.2
225,482 + MPMX19_06451 0.30 +1.1
225,483 - MPMX19_06451 0.30 -0.1
225,487 + MPMX19_06451 0.31 +0.0
225,487 + MPMX19_06451 0.31 -0.8
225,487 + MPMX19_06451 0.31 -0.1
225,487 + MPMX19_06451 0.31 -0.8
225,488 - MPMX19_06451 0.31 -1.8
225,488 - MPMX19_06451 0.31 -0.7
225,488 - MPMX19_06451 0.31 -0.9
225,488 - MPMX19_06451 0.31 -0.2
225,488 - MPMX19_06451 0.31 -0.2
225,496 + MPMX19_06451 0.32 +0.5
225,496 + MPMX19_06451 0.32 -0.8
225,496 + MPMX19_06451 0.32 -0.7
225,496 + MPMX19_06451 0.32 +0.3
225,496 + MPMX19_06451 0.32 -0.9
225,497 - MPMX19_06451 0.32 -1.8
225,497 - MPMX19_06451 0.32 +0.1
225,497 - MPMX19_06451 0.32 -2.9
225,497 - MPMX19_06451 0.32 -0.9
225,529 - MPMX19_06451 0.35 -1.1
225,586 - MPMX19_06451 0.41 -0.7
225,610 + MPMX19_06451 0.43 -0.4
225,610 + MPMX19_06451 0.43 -0.2
225,640 + MPMX19_06451 0.46 +1.3
225,641 - MPMX19_06451 0.47 +0.0
225,667 + MPMX19_06451 0.49 -0.8
225,667 + MPMX19_06451 0.49 -1.0
225,667 + MPMX19_06451 0.49 -0.4
225,667 + MPMX19_06451 0.49 +0.1
225,668 - MPMX19_06451 0.49 -0.2
225,668 - MPMX19_06451 0.49 +1.1
225,668 - MPMX19_06451 0.49 -0.7
225,688 + MPMX19_06451 0.51 +0.5
225,688 + MPMX19_06451 0.51 -1.0
225,688 + MPMX19_06451 0.51 -0.4
225,790 + MPMX19_06451 0.62 -2.4
225,790 + MPMX19_06451 0.62 +0.4
225,790 + MPMX19_06451 0.62 -0.3
225,790 + MPMX19_06451 0.62 -1.0
225,791 - MPMX19_06451 0.62 -0.8
225,875 + MPMX19_06451 0.71 +0.1
225,876 - MPMX19_06451 0.71 -1.9
225,876 - MPMX19_06451 0.71 -0.3
225,904 + MPMX19_06451 0.74 +0.2
225,904 + MPMX19_06451 0.74 +0.6
225,904 + MPMX19_06451 0.74 +0.9
225,904 + MPMX19_06451 0.74 -1.3
225,904 + MPMX19_06451 0.74 -1.0
225,905 - MPMX19_06451 0.74 -0.6
225,905 - MPMX19_06451 0.74 +0.3
225,905 - MPMX19_06451 0.74 +0.9
225,905 - MPMX19_06451 0.74 -1.1
225,905 - MPMX19_06451 0.74 -0.8
225,905 - MPMX19_06451 0.74 +0.0
225,905 - MPMX19_06451 0.74 -0.7
225,905 - MPMX19_06451 0.74 +0.3
225,906 + MPMX19_06451 0.74 -1.5
225,906 + MPMX19_06451 0.74 -0.8
225,907 - MPMX19_06451 0.74 +0.6
225,907 - MPMX19_06451 0.74 -0.3
225,907 - MPMX19_06451 0.74 -1.2
226,110 - +0.6
226,137 + +0.9
226,137 + -1.7
226,137 + +0.9
226,137 + +0.1
226,138 - +0.6
226,138 - -1.1
226,159 + +0.8
226,159 + -0.4
226,160 - -1.6
226,216 - -2.1
226,216 - -1.9
226,216 - -1.1
226,234 - -2.4
226,242 - -0.5
226,242 - -0.1
226,376 + +0.1
226,394 + -0.7
226,395 - +0.0
226,395 - -0.2
226,395 - -0.4
226,599 + MPMX19_06452 0.23 -1.6
226,599 + MPMX19_06452 0.23 -0.8
226,600 - MPMX19_06452 0.23 +0.6
226,600 - MPMX19_06452 0.23 -0.3
226,600 - MPMX19_06452 0.23 -1.4
226,600 - MPMX19_06452 0.23 -0.3
226,632 + MPMX19_06452 0.25 -1.7
226,632 + MPMX19_06452 0.25 +0.9
226,633 - MPMX19_06452 0.26 -0.8
226,667 + MPMX19_06452 0.28 -0.4
226,668 - MPMX19_06452 0.28 -0.5
226,774 + MPMX19_06452 0.35 -1.1
226,774 + MPMX19_06452 0.35 +0.5
226,775 - MPMX19_06452 0.35 -1.4
226,775 - MPMX19_06452 0.35 -0.0
226,820 + MPMX19_06452 0.38 +0.9
226,820 + MPMX19_06452 0.38 -0.4
226,821 - MPMX19_06452 0.38 -1.1
226,821 - MPMX19_06452 0.38 +0.1
226,821 - MPMX19_06452 0.38 +0.1
226,821 - MPMX19_06452 0.38 +0.4
226,821 - MPMX19_06452 0.38 +1.0
226,821 - MPMX19_06452 0.38 -1.7
227,000 + MPMX19_06452 0.50 +0.2
227,000 + MPMX19_06452 0.50 +0.1
227,000 + MPMX19_06452 0.50 -0.8
227,001 - MPMX19_06452 0.50 +1.7
227,001 - MPMX19_06452 0.50 -0.8
227,142 + MPMX19_06452 0.60 -0.1
227,142 + MPMX19_06452 0.60 -0.9
227,143 - MPMX19_06452 0.60 +0.7
227,269 + MPMX19_06452 0.68 -0.9
227,403 + MPMX19_06452 0.77 -0.9
227,403 + MPMX19_06452 0.77 -0.3
227,404 - MPMX19_06452 0.77 -0.2
227,404 - MPMX19_06452 0.77 -0.5
227,404 - MPMX19_06452 0.77 -1.9
227,404 - MPMX19_06452 0.77 -0.1
227,404 - MPMX19_06452 0.77 -1.2
227,404 - MPMX19_06452 0.77 +0.6
227,404 - MPMX19_06452 0.77 -0.9
227,613 + -0.9
227,613 + -1.0
227,613 + +1.9
227,613 + -0.9
227,613 + -0.7
227,613 + -1.3
227,613 + -1.1
227,613 + -2.2
227,613 + -0.3
227,613 + -0.1
227,613 + -0.4
227,614 - -1.4
227,614 - -1.4
227,614 - +0.1
227,614 - -0.4
227,614 - -0.1
227,614 - -0.8
227,614 - -1.8
227,614 - +0.7
227,614 - -2.2
227,614 - +0.8
227,614 - -1.3
227,614 - -1.5
227,614 - -1.1
227,634 + -0.7
227,634 + -1.7
227,635 - +0.3
227,635 - +0.6
227,635 - -0.6
227,635 - -2.5
227,707 + +0.1
227,707 + -1.4
227,707 + -1.2
227,707 + -0.3
227,708 - +1.2
227,708 - +0.5
227,708 - +1.4
227,708 - -0.1
227,708 - +0.8
227,708 - +0.7
227,708 - -0.1
227,728 + +0.4
227,728 + -1.0
227,728 + -0.3
227,728 + +1.4
227,729 - -0.4
227,729 - -0.7
227,729 - -0.2
227,729 - -1.0
227,729 - -0.9
227,762 + +0.6
227,762 + -0.3
227,762 + -1.4
227,762 + -0.4
227,762 + -1.1
227,762 + -1.3
227,762 + +0.2
227,762 + -1.4
227,762 + +0.0
227,762 + -1.3
227,763 - +0.5
227,763 - +0.4
227,763 - -0.3
227,763 - +1.3
227,763 - -1.1
227,763 - +0.7
228,009 + MPMX19_06453 0.31 +0.5
228,009 + MPMX19_06453 0.31 -0.2
228,010 - MPMX19_06453 0.31 -2.7
228,278 + MPMX19_06453 0.62 +0.3
228,278 + MPMX19_06453 0.62 -0.8
228,278 + MPMX19_06453 0.62 -0.5
228,278 + MPMX19_06453 0.62 -0.0
228,278 + MPMX19_06453 0.62 +0.6
228,278 + MPMX19_06453 0.62 -0.8
228,278 + MPMX19_06453 0.62 +1.7
228,278 + MPMX19_06453 0.62 -0.3
228,279 - MPMX19_06453 0.62 +1.2
228,279 - MPMX19_06453 0.62 -1.5
228,279 - MPMX19_06453 0.62 +1.1
228,279 - MPMX19_06453 0.62 -1.8
228,279 - MPMX19_06453 0.62 +0.8
228,279 - MPMX19_06453 0.62 -0.1
228,279 - MPMX19_06453 0.62 -0.1
228,279 - MPMX19_06453 0.62 +0.2
228,507 - MPMX19_06453 0.88 +0.5
228,596 + -1.7
228,597 - -1.8
228,597 - -1.1
228,617 + +0.2
228,617 + +0.5
228,617 + -1.0
228,618 - +0.1
228,618 - -0.3
228,618 - -0.3
228,618 - +1.9
228,618 - -0.9
228,618 - +0.8
228,630 + -1.1
228,630 + -0.9
228,630 + +0.3
228,630 + +0.7
228,631 - -1.3
228,631 - -0.9
228,652 + -0.1
228,653 - +0.4
228,653 - -1.4
228,667 + -0.4
228,684 + +0.0
228,684 + +2.3
228,684 + +0.9
228,684 + +0.1
228,685 - +0.2
228,685 - +0.2
228,685 - +0.2
228,685 - -0.2
228,685 - -0.9

Or see this region's nucleotide sequence