Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06439

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06437 and MPMX19_06438 are separated by 140 nucleotidesMPMX19_06438 and MPMX19_06439 are separated by 163 nucleotidesMPMX19_06439 and MPMX19_06440 overlap by 4 nucleotides MPMX19_06437: MPMX19_06437 - DNA-invertase hin, at 211,767 to 212,345 _06437 MPMX19_06438: MPMX19_06438 - DNA-invertase hin, at 212,486 to 213,052 _06438 MPMX19_06439: MPMX19_06439 - hypothetical protein, at 213,216 to 214,691 _06439 MPMX19_06440: MPMX19_06440 - ISNCY family transposase ISBli29, at 214,688 to 215,506 _06440 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2at 212.254 kb on + strand, within MPMX19_06437at 212.254 kb on + strand, within MPMX19_06437at 212.254 kb on + strand, within MPMX19_06437at 212.280 kb on + strand, within MPMX19_06437at 212.281 kb on - strand, within MPMX19_06437at 212.332 kb on + strandat 212.333 kb on - strandat 212.333 kb on - strandat 212.442 kb on - strandat 212.442 kb on - strandat 212.442 kb on - strandat 212.442 kb on - strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.466 kb on - strandat 212.466 kb on - strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.556 kb on + strand, within MPMX19_06438at 212.556 kb on + strand, within MPMX19_06438at 212.575 kb on + strand, within MPMX19_06438at 212.575 kb on + strand, within MPMX19_06438at 212.576 kb on - strand, within MPMX19_06438at 212.576 kb on - strand, within MPMX19_06438at 212.755 kb on - strand, within MPMX19_06438at 212.755 kb on - strand, within MPMX19_06438at 212.866 kb on + strand, within MPMX19_06438at 212.866 kb on + strand, within MPMX19_06438at 212.867 kb on - strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.964 kb on - strand, within MPMX19_06438at 213.030 kb on + strandat 213.031 kb on - strandat 213.063 kb on + strandat 213.063 kb on + strandat 213.063 kb on + strandat 213.063 kb on + strandat 213.064 kb on - strandat 213.064 kb on - strandat 213.064 kb on - strandat 213.068 kb on + strandat 213.069 kb on - strandat 213.086 kb on + strandat 213.087 kb on - strandat 213.097 kb on + strandat 213.097 kb on + strandat 213.097 kb on + strandat 213.098 kb on - strandat 213.098 kb on - strandat 213.576 kb on + strand, within MPMX19_06439at 213.576 kb on + strand, within MPMX19_06439at 213.576 kb on + strand, within MPMX19_06439at 213.577 kb on - strand, within MPMX19_06439at 213.577 kb on - strand, within MPMX19_06439at 213.651 kb on + strand, within MPMX19_06439at 213.652 kb on - strand, within MPMX19_06439at 213.652 kb on - strand, within MPMX19_06439at 213.664 kb on - strand, within MPMX19_06439at 213.787 kb on + strand, within MPMX19_06439at 213.788 kb on - strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 214.008 kb on + strand, within MPMX19_06439at 214.172 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.190 kb on + strand, within MPMX19_06439at 214.356 kb on + strand, within MPMX19_06439at 214.356 kb on + strand, within MPMX19_06439at 214.357 kb on - strand, within MPMX19_06439at 214.357 kb on - strand, within MPMX19_06439at 214.357 kb on - strand, within MPMX19_06439at 214.357 kb on - strand, within MPMX19_06439at 214.408 kb on - strand, within MPMX19_06439at 214.551 kb on - strandat 214.778 kb on + strand, within MPMX19_06440at 214.778 kb on + strand, within MPMX19_06440at 214.779 kb on - strand, within MPMX19_06440at 214.779 kb on - strand, within MPMX19_06440at 214.779 kb on - strand, within MPMX19_06440at 214.867 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.940 kb on + strand, within MPMX19_06440at 214.941 kb on - strand, within MPMX19_06440at 215.223 kb on - strand, within MPMX19_06440at 215.223 kb on - strand, within MPMX19_06440at 215.223 kb on - strand, within MPMX19_06440at 215.223 kb on - strand, within MPMX19_06440at 215.249 kb on + strand, within MPMX19_06440at 215.249 kb on + strand, within MPMX19_06440at 215.381 kb on - strand, within MPMX19_06440at 215.381 kb on - strand, within MPMX19_06440at 215.381 kb on - strand, within MPMX19_06440at 215.483 kb on - strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.505 kb on - strandat 215.505 kb on - strandat 215.505 kb on - strandat 215.528 kb on + strandat 215.528 kb on + strandat 215.528 kb on + strandat 215.578 kb on - strandat 215.578 kb on - strandat 215.578 kb on - strandat 215.626 kb on + strandat 215.626 kb on + strandat 215.626 kb on + strandat 215.627 kb on - strandat 215.627 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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212,254 + MPMX19_06437 0.84 -0.1
212,254 + MPMX19_06437 0.84 +0.3
212,254 + MPMX19_06437 0.84 -0.3
212,280 + MPMX19_06437 0.89 -0.8
212,281 - MPMX19_06437 0.89 -1.3
212,332 + -1.6
212,333 - -0.8
212,333 - -1.3
212,442 - -0.1
212,442 - +1.9
212,442 - -1.1
212,442 - -1.1
212,465 + -2.3
212,465 + +0.7
212,465 + +1.4
212,465 + +0.2
212,465 + -0.5
212,465 + -1.1
212,465 + +0.3
212,466 - -1.3
212,466 - -0.4
212,483 + +0.3
212,483 + -1.1
212,483 + -1.1
212,483 + -1.8
212,483 + +0.9
212,483 + -0.5
212,483 + -0.5
212,483 + -0.7
212,484 - -1.1
212,484 - +0.6
212,484 - -1.6
212,484 - -1.1
212,484 - +1.2
212,484 - +0.6
212,484 - +0.1
212,484 - +1.1
212,484 - -2.0
212,484 - +0.2
212,484 - -1.6
212,484 - -0.4
212,484 - -0.7
212,556 + MPMX19_06438 0.12 +0.1
212,556 + MPMX19_06438 0.12 -0.0
212,575 + MPMX19_06438 0.16 +1.0
212,575 + MPMX19_06438 0.16 -1.5
212,576 - MPMX19_06438 0.16 -0.3
212,576 - MPMX19_06438 0.16 -0.9
212,755 - MPMX19_06438 0.47 +0.7
212,755 - MPMX19_06438 0.47 -0.4
212,866 + MPMX19_06438 0.67 +0.8
212,866 + MPMX19_06438 0.67 +0.8
212,867 - MPMX19_06438 0.67 -0.8
212,946 + MPMX19_06438 0.81 -0.4
212,946 + MPMX19_06438 0.81 +0.2
212,946 + MPMX19_06438 0.81 -0.2
212,946 + MPMX19_06438 0.81 -0.9
212,946 + MPMX19_06438 0.81 -0.2
212,947 - MPMX19_06438 0.81 -0.0
212,947 - MPMX19_06438 0.81 -0.4
212,947 - MPMX19_06438 0.81 -0.3
212,947 - MPMX19_06438 0.81 -1.4
212,947 - MPMX19_06438 0.81 -0.1
212,947 - MPMX19_06438 0.81 -0.6
212,964 - MPMX19_06438 0.84 -1.8
213,030 + -1.7
213,031 - +0.8
213,063 + -1.4
213,063 + +0.7
213,063 + +1.6
213,063 + -2.2
213,064 - -1.6
213,064 - -0.7
213,064 - +2.7
213,068 + +0.1
213,069 - +0.3
213,086 + -1.6
213,087 - +0.3
213,097 + -0.7
213,097 + +0.5
213,097 + -1.6
213,098 - -1.3
213,098 - -0.8
213,576 + MPMX19_06439 0.24 +1.0
213,576 + MPMX19_06439 0.24 -0.8
213,576 + MPMX19_06439 0.24 +0.1
213,577 - MPMX19_06439 0.24 -1.3
213,577 - MPMX19_06439 0.24 -0.4
213,651 + MPMX19_06439 0.29 -0.3
213,652 - MPMX19_06439 0.30 +0.1
213,652 - MPMX19_06439 0.30 +0.5
213,664 - MPMX19_06439 0.30 -0.1
213,787 + MPMX19_06439 0.39 -1.0
213,788 - MPMX19_06439 0.39 -0.1
213,933 + MPMX19_06439 0.49 -0.1
213,933 + MPMX19_06439 0.49 +0.2
213,933 + MPMX19_06439 0.49 +1.9
213,933 + MPMX19_06439 0.49 +0.7
213,933 + MPMX19_06439 0.49 -2.1
213,933 + MPMX19_06439 0.49 -1.7
213,933 + MPMX19_06439 0.49 +1.3
213,933 + MPMX19_06439 0.49 -0.1
213,933 + MPMX19_06439 0.49 +0.3
213,933 + MPMX19_06439 0.49 -1.1
213,933 + MPMX19_06439 0.49 +0.7
213,934 - MPMX19_06439 0.49 -0.1
213,934 - MPMX19_06439 0.49 +1.3
213,934 - MPMX19_06439 0.49 +1.7
213,934 - MPMX19_06439 0.49 +1.4
213,934 - MPMX19_06439 0.49 +0.5
213,934 - MPMX19_06439 0.49 -0.9
214,008 + MPMX19_06439 0.54 -1.6
214,172 + MPMX19_06439 0.65 +1.3
214,185 + MPMX19_06439 0.66 +1.4
214,185 + MPMX19_06439 0.66 +0.6
214,185 + MPMX19_06439 0.66 -0.4
214,185 + MPMX19_06439 0.66 -0.7
214,185 + MPMX19_06439 0.66 +0.3
214,185 + MPMX19_06439 0.66 -0.1
214,185 + MPMX19_06439 0.66 -0.2
214,185 + MPMX19_06439 0.66 +1.4
214,185 + MPMX19_06439 0.66 +1.0
214,185 + MPMX19_06439 0.66 +1.0
214,185 + MPMX19_06439 0.66 +0.2
214,185 + MPMX19_06439 0.66 -1.0
214,185 + MPMX19_06439 0.66 -0.7
214,185 + MPMX19_06439 0.66 -0.1
214,185 + MPMX19_06439 0.66 +0.2
214,185 + MPMX19_06439 0.66 +1.7
214,185 + MPMX19_06439 0.66 +0.9
214,185 + MPMX19_06439 0.66 -0.1
214,185 + MPMX19_06439 0.66 +0.9
214,185 + MPMX19_06439 0.66 -1.9
214,186 - MPMX19_06439 0.66 -0.5
214,186 - MPMX19_06439 0.66 -0.1
214,186 - MPMX19_06439 0.66 +0.5
214,186 - MPMX19_06439 0.66 -0.9
214,186 - MPMX19_06439 0.66 -1.6
214,186 - MPMX19_06439 0.66 -1.6
214,186 - MPMX19_06439 0.66 +0.0
214,186 - MPMX19_06439 0.66 +0.8
214,186 - MPMX19_06439 0.66 -1.0
214,186 - MPMX19_06439 0.66 -0.9
214,186 - MPMX19_06439 0.66 +0.0
214,186 - MPMX19_06439 0.66 +0.4
214,186 - MPMX19_06439 0.66 -1.6
214,186 - MPMX19_06439 0.66 -1.6
214,186 - MPMX19_06439 0.66 -0.9
214,186 - MPMX19_06439 0.66 -0.9
214,186 - MPMX19_06439 0.66 -0.0
214,186 - MPMX19_06439 0.66 +0.0
214,186 - MPMX19_06439 0.66 +0.3
214,186 - MPMX19_06439 0.66 -0.4
214,190 + MPMX19_06439 0.66 -0.2
214,356 + MPMX19_06439 0.77 -0.0
214,356 + MPMX19_06439 0.77 +0.0
214,357 - MPMX19_06439 0.77 -0.1
214,357 - MPMX19_06439 0.77 +0.2
214,357 - MPMX19_06439 0.77 -0.4
214,357 - MPMX19_06439 0.77 -1.7
214,408 - MPMX19_06439 0.81 -0.9
214,551 - -1.2
214,778 + MPMX19_06440 0.11 -2.2
214,778 + MPMX19_06440 0.11 +1.9
214,779 - MPMX19_06440 0.11 +0.5
214,779 - MPMX19_06440 0.11 -0.9
214,779 - MPMX19_06440 0.11 -0.3
214,867 + MPMX19_06440 0.22 +0.2
214,907 + MPMX19_06440 0.27 -0.1
214,907 + MPMX19_06440 0.27 -0.1
214,907 + MPMX19_06440 0.27 -1.5
214,907 + MPMX19_06440 0.27 -1.9
214,907 + MPMX19_06440 0.27 -1.2
214,907 + MPMX19_06440 0.27 -0.6
214,907 + MPMX19_06440 0.27 +0.9
214,907 + MPMX19_06440 0.27 -1.4
214,907 + MPMX19_06440 0.27 -0.3
214,908 - MPMX19_06440 0.27 -0.4
214,908 - MPMX19_06440 0.27 -0.7
214,908 - MPMX19_06440 0.27 +0.7
214,908 - MPMX19_06440 0.27 +0.6
214,908 - MPMX19_06440 0.27 -0.3
214,908 - MPMX19_06440 0.27 -0.1
214,940 + MPMX19_06440 0.31 +0.3
214,941 - MPMX19_06440 0.31 +0.9
215,223 - MPMX19_06440 0.65 -0.7
215,223 - MPMX19_06440 0.65 +0.9
215,223 - MPMX19_06440 0.65 -1.0
215,223 - MPMX19_06440 0.65 -0.9
215,249 + MPMX19_06440 0.68 +0.3
215,249 + MPMX19_06440 0.68 -0.8
215,381 - MPMX19_06440 0.85 -0.2
215,381 - MPMX19_06440 0.85 +0.9
215,381 - MPMX19_06440 0.85 -1.4
215,483 - +0.9
215,504 + -1.3
215,504 + -0.8
215,504 + -0.8
215,504 + -0.6
215,504 + -0.4
215,504 + +0.1
215,504 + +0.3
215,504 + -2.1
215,505 - -0.7
215,505 - +0.5
215,505 - -0.0
215,528 + -0.7
215,528 + +0.6
215,528 + +1.5
215,578 - +0.9
215,578 - +0.1
215,578 - +1.3
215,626 + -1.8
215,626 + -0.3
215,626 + -1.0
215,627 - -0.3
215,627 - -0.6

Or see this region's nucleotide sequence