Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06418 and MPMX19_06419 are separated by 512 nucleotides MPMX19_06419 and MPMX19_06420 are separated by 99 nucleotides MPMX19_06420 and MPMX19_06421 are separated by 224 nucleotides
MPMX19_06418: MPMX19_06418 - Adaptive-response sensory-kinase SasA, at 188,140 to 189,387
_06418
MPMX19_06419: MPMX19_06419 - IS110 family transposase ISHne3, at 189,900 to 190,586
_06419
MPMX19_06420: MPMX19_06420 - hypothetical protein, at 190,686 to 191,078
_06420
MPMX19_06421: MPMX19_06421 - hypothetical protein, at 191,303 to 192,928
_06421
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.932 kb on - strand, within MPMX19_06418 at 188.975 kb on + strand, within MPMX19_06418 at 188.976 kb on - strand, within MPMX19_06418 at 188.976 kb on - strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.032 kb on + strand, within MPMX19_06418 at 189.032 kb on + strand, within MPMX19_06418 at 189.033 kb on - strand, within MPMX19_06418 at 189.033 kb on - strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.226 kb on + strand, within MPMX19_06418 at 189.227 kb on - strand, within MPMX19_06418 at 189.227 kb on - strand, within MPMX19_06418 at 189.265 kb on + strand at 189.318 kb on + strand at 189.318 kb on + strand at 189.318 kb on + strand at 189.323 kb on + strand at 189.376 kb on - strand at 189.377 kb on + strand at 189.432 kb on + strand at 189.563 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.606 kb on - strand at 189.606 kb on - strand at 189.606 kb on - strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.636 kb on - strand at 189.636 kb on - strand at 189.651 kb on + strand at 189.652 kb on - strand at 189.652 kb on - strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.726 kb on - strand at 189.726 kb on - strand at 189.726 kb on - strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.902 kb on - strand at 189.902 kb on - strand at 189.902 kb on - strand at 189.902 kb on - strand at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.049 kb on - strand, within MPMX19_06419 at 190.049 kb on - strand, within MPMX19_06419 at 190.118 kb on - strand, within MPMX19_06419 at 190.561 kb on + strand at 190.561 kb on + strand at 190.561 kb on + strand at 190.561 kb on + strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.566 kb on + strand at 190.567 kb on - strand at 190.567 kb on - strand at 190.567 kb on - strand at 190.590 kb on + strand at 190.590 kb on + strand at 190.591 kb on - strand at 190.612 kb on + strand at 190.613 kb on - strand at 190.627 kb on + strand at 190.628 kb on - strand at 190.628 kb on - strand at 190.852 kb on - strand, within MPMX19_06420 at 190.852 kb on - strand, within MPMX19_06420 at 190.852 kb on - strand, within MPMX19_06420 at 190.872 kb on + strand, within MPMX19_06420 at 190.872 kb on + strand, within MPMX19_06420 at 190.872 kb on + strand, within MPMX19_06420 at 190.872 kb on + strand, within MPMX19_06420 at 190.873 kb on - strand, within MPMX19_06420 at 190.873 kb on - strand, within MPMX19_06420 at 190.873 kb on - strand, within MPMX19_06420 at 191.184 kb on + strand at 191.184 kb on + strand at 191.185 kb on - strand at 191.185 kb on - strand at 191.201 kb on + strand at 191.202 kb on - strand at 191.270 kb on - strand at 191.270 kb on - strand at 191.300 kb on + strand at 191.301 kb on - strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.306 kb on + strand at 191.331 kb on + strand at 191.332 kb on - strand at 191.332 kb on - strand at 191.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 188,900 + MPMX19_06418 0.61 -1.5 188,900 + MPMX19_06418 0.61 -1.8 188,900 + MPMX19_06418 0.61 -0.7 188,900 + MPMX19_06418 0.61 +1.6 188,932 - MPMX19_06418 0.63 -1.2 188,975 + MPMX19_06418 0.67 -0.2 188,976 - MPMX19_06418 0.67 -0.4 188,976 - MPMX19_06418 0.67 +0.2 189,022 + MPMX19_06418 0.71 -0.9 189,022 + MPMX19_06418 0.71 -0.4 189,022 + MPMX19_06418 0.71 +0.2 189,023 - MPMX19_06418 0.71 -0.9 189,023 - MPMX19_06418 0.71 -1.7 189,023 - MPMX19_06418 0.71 -1.4 189,032 + MPMX19_06418 0.71 -0.2 189,032 + MPMX19_06418 0.71 -2.3 189,033 - MPMX19_06418 0.72 +1.7 189,033 - MPMX19_06418 0.72 +1.5 189,212 + MPMX19_06418 0.86 +1.1 189,212 + MPMX19_06418 0.86 -1.1 189,212 + MPMX19_06418 0.86 -1.1 189,226 + MPMX19_06418 0.87 -0.3 189,227 - MPMX19_06418 0.87 -0.7 189,227 - MPMX19_06418 0.87 +0.9 189,265 + +1.5 189,318 + +0.1 189,318 + +1.1 189,318 + -1.6 189,323 + +0.9 189,376 - -1.9 189,377 + +0.4 189,432 + -0.7 189,563 + +1.0 189,605 + -1.0 189,605 + +0.6 189,605 + -0.3 189,605 + -0.8 189,606 - +0.6 189,606 - +0.4 189,606 - -0.1 189,635 + -1.5 189,635 + -1.6 189,635 + +0.1 189,635 + -3.4 189,636 - +0.0 189,636 - -0.1 189,651 + -0.1 189,652 - -0.0 189,652 - -0.3 189,725 + -1.5 189,725 + -0.7 189,725 + -0.1 189,725 + -1.9 189,725 + -0.3 189,726 - +0.0 189,726 - -0.9 189,726 - +0.2 189,901 + +0.9 189,901 + -0.1 189,901 + -2.2 189,901 + -0.3 189,901 + -0.8 189,901 + +0.1 189,901 + +0.7 189,902 - +0.4 189,902 - +0.1 189,902 - +0.4 189,902 - -0.1 190,048 + MPMX19_06419 0.22 -0.1 190,048 + MPMX19_06419 0.22 -1.0 190,048 + MPMX19_06419 0.22 -1.6 190,048 + MPMX19_06419 0.22 +0.5 190,049 - MPMX19_06419 0.22 -0.8 190,049 - MPMX19_06419 0.22 -1.0 190,118 - MPMX19_06419 0.32 -1.6 190,561 + -1.4 190,561 + -1.3 190,561 + -0.6 190,561 + -0.4 190,562 - -1.6 190,562 - -0.9 190,562 - +0.0 190,562 - +0.2 190,562 - +0.9 190,562 - -1.1 190,562 - -1.0 190,562 - +0.9 190,562 - -1.5 190,566 + -0.3 190,567 - +1.4 190,567 - -1.3 190,567 - -0.3 190,590 + +0.3 190,590 + -2.0 190,591 - -0.2 190,612 + -0.4 190,613 - +0.2 190,627 + -0.8 190,628 - +0.9 190,628 - -2.0 190,852 - MPMX19_06420 0.42 -1.1 190,852 - MPMX19_06420 0.42 -0.4 190,852 - MPMX19_06420 0.42 -0.9 190,872 + MPMX19_06420 0.47 +0.3 190,872 + MPMX19_06420 0.47 -1.2 190,872 + MPMX19_06420 0.47 -1.1 190,872 + MPMX19_06420 0.47 +1.4 190,873 - MPMX19_06420 0.48 -1.4 190,873 - MPMX19_06420 0.48 +1.1 190,873 - MPMX19_06420 0.48 -1.6 191,184 + +0.6 191,184 + -0.2 191,185 - +0.3 191,185 - +0.9 191,201 + -0.7 191,202 - -0.3 191,270 - -0.7 191,270 - -0.9 191,300 + +0.9 191,301 - +0.2 191,304 + -1.3 191,304 + -0.7 191,304 + -0.7 191,304 + -1.7 191,304 + -0.8 191,304 + -1.3 191,305 - +0.0 191,305 - +1.7 191,305 - +0.3 191,305 - +0.7 191,305 - -1.3 191,305 - -1.1 191,305 - -0.3 191,305 - +0.1 191,305 - -0.8 191,305 - +0.5 191,306 + -1.6 191,331 + -0.1 191,332 - -0.7 191,332 - +1.9 191,391 + -1.7
Or see this region's nucleotide sequence