Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06417

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06415 and MPMX19_06416 are separated by 13 nucleotidesMPMX19_06416 and MPMX19_06417 are separated by 214 nucleotidesMPMX19_06417 and MPMX19_06418 are separated by 101 nucleotides MPMX19_06415: MPMX19_06415 - Copper resistance protein A, at 184,467 to 186,341 _06415 MPMX19_06416: MPMX19_06416 - Copper resistance protein B, at 186,355 to 187,110 _06416 MPMX19_06417: MPMX19_06417 - Transcriptional regulatory protein OmpR, at 187,325 to 188,038 _06417 MPMX19_06418: MPMX19_06418 - Adaptive-response sensory-kinase SasA, at 188,140 to 189,387 _06418 Position (kb) 187 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 186.365 kb on + strandat 186.365 kb on + strandat 186.365 kb on + strandat 186.366 kb on - strandat 186.366 kb on - strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.381 kb on + strandat 186.382 kb on - strandat 186.585 kb on + strand, within MPMX19_06416at 186.585 kb on + strand, within MPMX19_06416at 186.585 kb on + strand, within MPMX19_06416at 186.585 kb on + strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.586 kb on - strand, within MPMX19_06416at 186.658 kb on + strand, within MPMX19_06416at 186.658 kb on + strand, within MPMX19_06416at 186.659 kb on - strand, within MPMX19_06416at 186.661 kb on - strand, within MPMX19_06416at 186.661 kb on - strand, within MPMX19_06416at 186.661 kb on - strand, within MPMX19_06416at 186.661 kb on - strand, within MPMX19_06416at 186.706 kb on + strand, within MPMX19_06416at 186.706 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.736 kb on + strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.737 kb on - strand, within MPMX19_06416at 186.769 kb on + strand, within MPMX19_06416at 186.769 kb on + strand, within MPMX19_06416at 186.772 kb on + strand, within MPMX19_06416at 186.773 kb on - strand, within MPMX19_06416at 186.813 kb on + strand, within MPMX19_06416at 186.841 kb on + strand, within MPMX19_06416at 186.842 kb on - strand, within MPMX19_06416at 186.852 kb on + strand, within MPMX19_06416at 186.853 kb on - strand, within MPMX19_06416at 186.997 kb on + strand, within MPMX19_06416at 186.998 kb on - strand, within MPMX19_06416at 186.998 kb on - strand, within MPMX19_06416at 187.042 kb on - strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.085 kb on + strandat 187.086 kb on - strandat 187.086 kb on - strandat 187.086 kb on - strandat 187.108 kb on + strandat 187.109 kb on - strandat 187.238 kb on + strandat 187.400 kb on + strand, within MPMX19_06417at 187.401 kb on - strand, within MPMX19_06417at 187.401 kb on - strand, within MPMX19_06417at 187.428 kb on - strand, within MPMX19_06417at 187.428 kb on - strand, within MPMX19_06417at 187.428 kb on - strand, within MPMX19_06417at 187.444 kb on + strand, within MPMX19_06417at 187.444 kb on + strand, within MPMX19_06417at 187.444 kb on + strand, within MPMX19_06417at 187.444 kb on + strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.445 kb on - strand, within MPMX19_06417at 187.616 kb on + strand, within MPMX19_06417at 187.617 kb on - strand, within MPMX19_06417at 187.617 kb on - strand, within MPMX19_06417at 187.617 kb on - strand, within MPMX19_06417at 187.617 kb on - strand, within MPMX19_06417at 187.750 kb on + strand, within MPMX19_06417at 187.751 kb on - strand, within MPMX19_06417at 187.817 kb on + strand, within MPMX19_06417at 187.960 kb on + strand, within MPMX19_06417at 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.006 kb on + strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.007 kb on - strandat 188.081 kb on + strandat 188.081 kb on + strandat 188.082 kb on - strandat 188.082 kb on - strandat 188.134 kb on + strandat 188.139 kb on + strandat 188.139 kb on + strandat 188.139 kb on + strandat 188.321 kb on - strand, within MPMX19_06418at 188.321 kb on - strand, within MPMX19_06418at 188.321 kb on - strand, within MPMX19_06418at 188.321 kb on - strand, within MPMX19_06418at 188.345 kb on + strand, within MPMX19_06418at 188.346 kb on - strand, within MPMX19_06418at 188.403 kb on - strand, within MPMX19_06418at 188.585 kb on + strand, within MPMX19_06418at 188.586 kb on - strand, within MPMX19_06418at 188.586 kb on - strand, within MPMX19_06418at 188.586 kb on - strand, within MPMX19_06418at 188.586 kb on - strand, within MPMX19_06418at 188.586 kb on - strand, within MPMX19_06418at 188.621 kb on + strand, within MPMX19_06418at 188.622 kb on - strand, within MPMX19_06418at 188.702 kb on + strand, within MPMX19_06418at 188.702 kb on + strand, within MPMX19_06418at 188.702 kb on + strand, within MPMX19_06418at 188.743 kb on - strand, within MPMX19_06418at 188.754 kb on - strand, within MPMX19_06418at 188.754 kb on - strand, within MPMX19_06418at 188.836 kb on + strand, within MPMX19_06418at 188.836 kb on + strand, within MPMX19_06418at 188.900 kb on + strand, within MPMX19_06418at 188.900 kb on + strand, within MPMX19_06418at 188.900 kb on + strand, within MPMX19_06418at 188.900 kb on + strand, within MPMX19_06418at 188.932 kb on - strand, within MPMX19_06418at 188.975 kb on + strand, within MPMX19_06418at 188.976 kb on - strand, within MPMX19_06418at 188.976 kb on - strand, within MPMX19_06418at 189.022 kb on + strand, within MPMX19_06418at 189.022 kb on + strand, within MPMX19_06418at 189.022 kb on + strand, within MPMX19_06418at 189.023 kb on - strand, within MPMX19_06418at 189.023 kb on - strand, within MPMX19_06418at 189.023 kb on - strand, within MPMX19_06418at 189.032 kb on + strand, within MPMX19_06418at 189.032 kb on + strand, within MPMX19_06418at 189.033 kb on - strand, within MPMX19_06418at 189.033 kb on - strand, within MPMX19_06418

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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186,365 + +0.7
186,365 + -0.4
186,365 + -0.9
186,366 - +1.1
186,366 - +0.6
186,381 + +0.8
186,381 + +0.7
186,381 + -0.1
186,381 + +0.7
186,381 + +0.6
186,381 + -0.4
186,382 - -0.2
186,585 + MPMX19_06416 0.30 -1.5
186,585 + MPMX19_06416 0.30 +0.9
186,585 + MPMX19_06416 0.30 -2.1
186,585 + MPMX19_06416 0.30 -0.1
186,586 - MPMX19_06416 0.31 -0.2
186,586 - MPMX19_06416 0.31 -0.9
186,586 - MPMX19_06416 0.31 +0.1
186,586 - MPMX19_06416 0.31 +1.0
186,586 - MPMX19_06416 0.31 -1.4
186,658 + MPMX19_06416 0.40 -0.4
186,658 + MPMX19_06416 0.40 -1.6
186,659 - MPMX19_06416 0.40 -0.5
186,661 - MPMX19_06416 0.40 -0.6
186,661 - MPMX19_06416 0.40 +0.7
186,661 - MPMX19_06416 0.40 +0.3
186,661 - MPMX19_06416 0.40 +0.9
186,706 + MPMX19_06416 0.46 -0.7
186,706 + MPMX19_06416 0.46 -1.6
186,736 + MPMX19_06416 0.50 +0.1
186,736 + MPMX19_06416 0.50 +1.2
186,736 + MPMX19_06416 0.50 -0.3
186,736 + MPMX19_06416 0.50 -0.8
186,736 + MPMX19_06416 0.50 +0.0
186,736 + MPMX19_06416 0.50 -0.9
186,736 + MPMX19_06416 0.50 -0.7
186,736 + MPMX19_06416 0.50 -0.3
186,736 + MPMX19_06416 0.50 -0.5
186,736 + MPMX19_06416 0.50 -0.1
186,736 + MPMX19_06416 0.50 -1.9
186,736 + MPMX19_06416 0.50 -0.3
186,736 + MPMX19_06416 0.50 -1.2
186,737 - MPMX19_06416 0.51 -1.6
186,737 - MPMX19_06416 0.51 -2.8
186,737 - MPMX19_06416 0.51 +0.3
186,737 - MPMX19_06416 0.51 +0.9
186,737 - MPMX19_06416 0.51 -0.1
186,737 - MPMX19_06416 0.51 +0.4
186,737 - MPMX19_06416 0.51 +0.6
186,737 - MPMX19_06416 0.51 -0.7
186,737 - MPMX19_06416 0.51 +1.6
186,737 - MPMX19_06416 0.51 -0.9
186,737 - MPMX19_06416 0.51 -0.1
186,737 - MPMX19_06416 0.51 -0.3
186,737 - MPMX19_06416 0.51 +0.9
186,737 - MPMX19_06416 0.51 -0.1
186,737 - MPMX19_06416 0.51 -0.3
186,769 + MPMX19_06416 0.55 -0.7
186,769 + MPMX19_06416 0.55 +0.1
186,772 + MPMX19_06416 0.55 -0.6
186,773 - MPMX19_06416 0.55 +0.2
186,813 + MPMX19_06416 0.61 -0.9
186,841 + MPMX19_06416 0.64 -0.8
186,842 - MPMX19_06416 0.64 -0.1
186,852 + MPMX19_06416 0.66 -1.1
186,853 - MPMX19_06416 0.66 -0.1
186,997 + MPMX19_06416 0.85 -0.0
186,998 - MPMX19_06416 0.85 -0.4
186,998 - MPMX19_06416 0.85 -0.4
187,042 - +0.3
187,085 + -0.7
187,085 + -2.5
187,085 + -2.0
187,085 + -1.7
187,085 + -1.2
187,085 + -0.5
187,086 - +1.5
187,086 - +0.4
187,086 - -2.0
187,108 + -1.0
187,109 - -0.1
187,238 + -0.4
187,400 + MPMX19_06417 0.11 -1.1
187,401 - MPMX19_06417 0.11 +0.9
187,401 - MPMX19_06417 0.11 -1.5
187,428 - MPMX19_06417 0.14 -1.8
187,428 - MPMX19_06417 0.14 -0.1
187,428 - MPMX19_06417 0.14 -1.8
187,444 + MPMX19_06417 0.17 -1.7
187,444 + MPMX19_06417 0.17 -2.1
187,444 + MPMX19_06417 0.17 -0.7
187,444 + MPMX19_06417 0.17 -0.8
187,445 - MPMX19_06417 0.17 -0.9
187,445 - MPMX19_06417 0.17 -0.4
187,445 - MPMX19_06417 0.17 -1.3
187,445 - MPMX19_06417 0.17 +1.9
187,445 - MPMX19_06417 0.17 -1.4
187,445 - MPMX19_06417 0.17 +0.8
187,616 + MPMX19_06417 0.41 -1.6
187,617 - MPMX19_06417 0.41 -0.0
187,617 - MPMX19_06417 0.41 +0.4
187,617 - MPMX19_06417 0.41 +0.0
187,617 - MPMX19_06417 0.41 -0.7
187,750 + MPMX19_06417 0.60 -1.4
187,751 - MPMX19_06417 0.60 -1.3
187,817 + MPMX19_06417 0.69 +0.3
187,960 + MPMX19_06417 0.89 -0.9
188,006 + +0.4
188,006 + -1.5
188,006 + -0.6
188,006 + -1.2
188,006 + -0.0
188,006 + -0.6
188,006 + -2.1
188,006 + -0.2
188,007 - -0.1
188,007 - +0.9
188,007 - -1.7
188,007 - -0.3
188,007 - -0.9
188,007 - -0.1
188,007 - -0.4
188,007 - +0.3
188,081 + -1.3
188,081 + -0.1
188,082 - -0.1
188,082 - -2.1
188,134 + -0.7
188,139 + +0.1
188,139 + +0.0
188,139 + +1.0
188,321 - MPMX19_06418 0.15 +0.7
188,321 - MPMX19_06418 0.15 -0.4
188,321 - MPMX19_06418 0.15 -0.7
188,321 - MPMX19_06418 0.15 -0.3
188,345 + MPMX19_06418 0.16 -0.7
188,346 - MPMX19_06418 0.17 -0.3
188,403 - MPMX19_06418 0.21 -1.1
188,585 + MPMX19_06418 0.36 -1.1
188,586 - MPMX19_06418 0.36 -0.1
188,586 - MPMX19_06418 0.36 -0.1
188,586 - MPMX19_06418 0.36 -1.0
188,586 - MPMX19_06418 0.36 -1.3
188,586 - MPMX19_06418 0.36 +1.6
188,621 + MPMX19_06418 0.39 -0.4
188,622 - MPMX19_06418 0.39 -0.1
188,702 + MPMX19_06418 0.45 -0.1
188,702 + MPMX19_06418 0.45 -0.7
188,702 + MPMX19_06418 0.45 -1.0
188,743 - MPMX19_06418 0.48 +0.2
188,754 - MPMX19_06418 0.49 +0.4
188,754 - MPMX19_06418 0.49 -0.4
188,836 + MPMX19_06418 0.56 -0.7
188,836 + MPMX19_06418 0.56 +0.1
188,900 + MPMX19_06418 0.61 -1.5
188,900 + MPMX19_06418 0.61 -1.8
188,900 + MPMX19_06418 0.61 -0.7
188,900 + MPMX19_06418 0.61 +1.6
188,932 - MPMX19_06418 0.63 -1.2
188,975 + MPMX19_06418 0.67 -0.2
188,976 - MPMX19_06418 0.67 -0.4
188,976 - MPMX19_06418 0.67 +0.2
189,022 + MPMX19_06418 0.71 -0.9
189,022 + MPMX19_06418 0.71 -0.4
189,022 + MPMX19_06418 0.71 +0.2
189,023 - MPMX19_06418 0.71 -0.9
189,023 - MPMX19_06418 0.71 -1.7
189,023 - MPMX19_06418 0.71 -1.4
189,032 + MPMX19_06418 0.71 -0.2
189,032 + MPMX19_06418 0.71 -2.3
189,033 - MPMX19_06418 0.72 +1.7
189,033 - MPMX19_06418 0.72 +1.5

Or see this region's nucleotide sequence