Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06306

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06304 and MPMX19_06305 are separated by 38 nucleotidesMPMX19_06305 and MPMX19_06306 are separated by 161 nucleotidesMPMX19_06306 and MPMX19_06307 are separated by 60 nucleotides MPMX19_06304: MPMX19_06304 - hypothetical protein, at 69,333 to 69,731 _06304 MPMX19_06305: MPMX19_06305 - hypothetical protein, at 69,770 to 70,318 _06305 MPMX19_06306: MPMX19_06306 - hypothetical protein, at 70,480 to 70,602 _06306 MPMX19_06307: MPMX19_06307 - hypothetical protein, at 70,663 to 71,856 _06307 Position (kb) 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 69.744 kb on + strandat 69.744 kb on + strandat 70.002 kb on + strand, within MPMX19_06305at 70.002 kb on + strand, within MPMX19_06305at 70.003 kb on - strand, within MPMX19_06305at 70.329 kb on + strandat 70.329 kb on + strandat 70.330 kb on - strandat 70.371 kb on + strandat 70.385 kb on + strandat 70.386 kb on - strandat 70.388 kb on - strandat 70.459 kb on + strandat 70.501 kb on + strand, within MPMX19_06306at 70.502 kb on - strand, within MPMX19_06306at 70.502 kb on - strand, within MPMX19_06306at 70.518 kb on + strand, within MPMX19_06306at 70.519 kb on - strand, within MPMX19_06306at 70.558 kb on - strand, within MPMX19_06306at 70.559 kb on + strand, within MPMX19_06306at 70.560 kb on - strand, within MPMX19_06306at 70.593 kb on - strandat 70.624 kb on + strandat 70.635 kb on + strandat 70.636 kb on - strandat 70.636 kb on - strandat 70.843 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.972 kb on + strand, within MPMX19_06307at 71.045 kb on - strand, within MPMX19_06307at 71.142 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.431 kb on + strand, within MPMX19_06307at 71.470 kb on + strand, within MPMX19_06307at 71.471 kb on - strand, within MPMX19_06307at 71.471 kb on - strand, within MPMX19_06307

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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69,744 + +0.5
69,744 + -0.5
70,002 + MPMX19_06305 0.42 +0.1
70,002 + MPMX19_06305 0.42 -0.8
70,003 - MPMX19_06305 0.42 -1.7
70,329 + +0.1
70,329 + +0.5
70,330 - -0.5
70,371 + -1.4
70,385 + -0.6
70,386 - -0.2
70,388 - -0.2
70,459 + -1.6
70,501 + MPMX19_06306 0.17 -0.6
70,502 - MPMX19_06306 0.18 -1.3
70,502 - MPMX19_06306 0.18 -0.7
70,518 + MPMX19_06306 0.31 -1.6
70,519 - MPMX19_06306 0.32 -0.9
70,558 - MPMX19_06306 0.63 -0.4
70,559 + MPMX19_06306 0.64 -1.0
70,560 - MPMX19_06306 0.65 -0.9
70,593 - -1.7
70,624 + +0.7
70,635 + -0.7
70,636 - +0.6
70,636 - +0.6
70,843 + MPMX19_06307 0.15 -0.3
70,873 + MPMX19_06307 0.18 +0.5
70,873 + MPMX19_06307 0.18 +0.2
70,873 + MPMX19_06307 0.18 -0.8
70,873 + MPMX19_06307 0.18 +0.6
70,873 + MPMX19_06307 0.18 -1.6
70,873 + MPMX19_06307 0.18 -0.6
70,873 + MPMX19_06307 0.18 +0.1
70,873 + MPMX19_06307 0.18 -0.4
70,873 + MPMX19_06307 0.18 +0.6
70,873 + MPMX19_06307 0.18 -0.7
70,873 + MPMX19_06307 0.18 -0.7
70,873 + MPMX19_06307 0.18 -1.1
70,873 + MPMX19_06307 0.18 +1.9
70,873 + MPMX19_06307 0.18 +1.0
70,873 + MPMX19_06307 0.18 -1.1
70,874 - MPMX19_06307 0.18 +0.1
70,874 - MPMX19_06307 0.18 -0.1
70,874 - MPMX19_06307 0.18 +0.2
70,874 - MPMX19_06307 0.18 -0.4
70,874 - MPMX19_06307 0.18 +1.2
70,874 - MPMX19_06307 0.18 +0.5
70,874 - MPMX19_06307 0.18 -1.9
70,874 - MPMX19_06307 0.18 +1.0
70,874 - MPMX19_06307 0.18 -0.4
70,874 - MPMX19_06307 0.18 -1.3
70,874 - MPMX19_06307 0.18 -0.6
70,874 - MPMX19_06307 0.18 -1.3
70,972 + MPMX19_06307 0.26 -1.9
71,045 - MPMX19_06307 0.32 -0.7
71,142 + MPMX19_06307 0.40 -1.6
71,228 + MPMX19_06307 0.47 -0.2
71,228 + MPMX19_06307 0.47 +0.3
71,228 + MPMX19_06307 0.47 +0.1
71,228 + MPMX19_06307 0.47 -1.4
71,228 + MPMX19_06307 0.47 -0.9
71,228 + MPMX19_06307 0.47 +0.9
71,228 + MPMX19_06307 0.47 -1.5
71,228 + MPMX19_06307 0.47 -0.6
71,228 + MPMX19_06307 0.47 -0.1
71,228 + MPMX19_06307 0.47 -0.4
71,228 + MPMX19_06307 0.47 -0.7
71,228 + MPMX19_06307 0.47 -0.5
71,228 + MPMX19_06307 0.47 +0.5
71,228 + MPMX19_06307 0.47 -0.3
71,228 + MPMX19_06307 0.47 -0.7
71,228 + MPMX19_06307 0.47 -2.2
71,228 + MPMX19_06307 0.47 -0.1
71,228 + MPMX19_06307 0.47 -0.1
71,228 + MPMX19_06307 0.47 -0.2
71,228 + MPMX19_06307 0.47 -0.4
71,228 + MPMX19_06307 0.47 +0.3
71,228 + MPMX19_06307 0.47 -1.1
71,228 + MPMX19_06307 0.47 -2.1
71,228 + MPMX19_06307 0.47 -0.4
71,228 + MPMX19_06307 0.47 -0.7
71,229 - MPMX19_06307 0.47 +0.4
71,229 - MPMX19_06307 0.47 -0.3
71,229 - MPMX19_06307 0.47 -2.2
71,229 - MPMX19_06307 0.47 -0.9
71,229 - MPMX19_06307 0.47 -1.6
71,229 - MPMX19_06307 0.47 -0.6
71,229 - MPMX19_06307 0.47 -1.0
71,229 - MPMX19_06307 0.47 +1.6
71,229 - MPMX19_06307 0.47 +0.6
71,229 - MPMX19_06307 0.47 +1.3
71,229 - MPMX19_06307 0.47 +0.5
71,431 + MPMX19_06307 0.64 -1.1
71,470 + MPMX19_06307 0.68 +1.9
71,471 - MPMX19_06307 0.68 +1.2
71,471 - MPMX19_06307 0.68 +0.1

Or see this region's nucleotide sequence