Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06295 and MPMX19_06296 are separated by 95 nucleotides MPMX19_06296 and MPMX19_06297 are separated by 236 nucleotides MPMX19_06297 and MPMX19_06298 are separated by 75 nucleotides MPMX19_06298 and MPMX19_06299 are separated by 210 nucleotides MPMX19_06299 and MPMX19_06300 are separated by 94 nucleotides
MPMX19_06295: MPMX19_06295 - Sensor kinase CckA, at 62,511 to 63,623
_06295
MPMX19_06296: MPMX19_06296 - hypothetical protein, at 63,719 to 63,970
_06296
MPMX19_06297: MPMX19_06297 - hypothetical protein, at 64,207 to 64,494
_06297
MPMX19_06298: MPMX19_06298 - hypothetical protein, at 64,570 to 64,869
_06298
MPMX19_06299: MPMX19_06299 - hypothetical protein, at 65,080 to 65,271
_06299
MPMX19_06300: MPMX19_06300 - hypothetical protein, at 65,366 to 66,292
_06300
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.652 kb on + strand at 63.671 kb on - strand at 64.000 kb on + strand at 64.001 kb on - strand at 64.001 kb on - strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.003 kb on - strand at 64.003 kb on - strand at 64.034 kb on - strand at 64.034 kb on - strand at 64.043 kb on + strand at 64.044 kb on - strand at 64.091 kb on - strand at 64.095 kb on + strand at 64.096 kb on - strand at 64.421 kb on + strand, within MPMX19_06297 at 64.422 kb on - strand, within MPMX19_06297 at 64.489 kb on - strand at 64.525 kb on + strand at 64.526 kb on - strand at 64.609 kb on - strand, within MPMX19_06298 at 64.632 kb on + strand, within MPMX19_06298 at 64.632 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 65.101 kb on + strand, within MPMX19_06299 at 65.129 kb on + strand, within MPMX19_06299 at 65.129 kb on + strand, within MPMX19_06299 at 65.130 kb on - strand, within MPMX19_06299 at 65.130 kb on - strand, within MPMX19_06299 at 65.130 kb on - strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 63,652 + -0.8 63,671 - -0.9 64,000 + -0.0 64,001 - -0.5 64,001 - +1.3 64,002 + -0.4 64,002 + +1.9 64,002 + -1.1 64,002 + -1.6 64,003 - -0.5 64,003 - -2.1 64,034 - -0.9 64,034 - -0.2 64,043 + -0.9 64,044 - -2.7 64,091 - -0.5 64,095 + +0.3 64,096 - -2.3 64,421 + MPMX19_06297 0.74 -0.1 64,422 - MPMX19_06297 0.75 +0.1 64,489 - +1.5 64,525 + -1.4 64,526 - -0.3 64,609 - MPMX19_06298 0.13 -0.0 64,632 + MPMX19_06298 0.21 +0.5 64,632 + MPMX19_06298 0.21 -0.1 64,766 + MPMX19_06298 0.65 -1.1 64,766 + MPMX19_06298 0.65 -0.1 64,766 + MPMX19_06298 0.65 -1.1 64,766 + MPMX19_06298 0.65 -0.1 64,766 + MPMX19_06298 0.65 -1.4 64,766 + MPMX19_06298 0.65 +0.5 64,766 + MPMX19_06298 0.65 -1.3 64,766 + MPMX19_06298 0.65 -0.1 64,766 + MPMX19_06298 0.65 -0.6 64,766 + MPMX19_06298 0.65 -0.9 64,766 + MPMX19_06298 0.65 -1.6 64,766 + MPMX19_06298 0.65 +0.0 64,766 + MPMX19_06298 0.65 +0.9 64,767 - MPMX19_06298 0.66 -0.8 64,767 - MPMX19_06298 0.66 -0.6 64,767 - MPMX19_06298 0.66 -0.7 64,767 - MPMX19_06298 0.66 +1.1 64,767 - MPMX19_06298 0.66 -0.8 64,767 - MPMX19_06298 0.66 +0.5 64,767 - MPMX19_06298 0.66 -1.6 64,767 - MPMX19_06298 0.66 +0.4 64,767 - MPMX19_06298 0.66 -0.1 64,767 - MPMX19_06298 0.66 -0.4 64,767 - MPMX19_06298 0.66 -0.9 64,767 - MPMX19_06298 0.66 -1.1 64,929 + +0.8 64,929 + -0.7 64,929 + +0.2 64,929 + -0.2 64,929 + +0.1 64,929 + +0.2 64,929 + -0.4 64,929 + +1.2 64,929 + -0.8 64,929 + -1.1 64,929 + -1.0 64,929 + +1.1 64,929 + -0.8 64,929 + -0.0 64,929 + -1.2 64,929 + -1.0 64,930 - -0.6 64,930 - +0.9 64,930 - -0.5 64,930 - -2.0 64,930 - -0.2 64,930 - -0.2 64,930 - -1.3 64,930 - -0.4 64,930 - -0.4 64,930 - -1.6 64,930 - -1.1 64,930 - -1.3 64,930 - -0.3 64,930 - -1.4 65,101 + MPMX19_06299 0.11 -0.6 65,129 + MPMX19_06299 0.26 -1.7 65,129 + MPMX19_06299 0.26 -1.1 65,130 - MPMX19_06299 0.26 -2.1 65,130 - MPMX19_06299 0.26 +1.0 65,130 - MPMX19_06299 0.26 -1.2 65,240 + MPMX19_06299 0.83 -0.2 65,240 + MPMX19_06299 0.83 -0.8 65,240 + MPMX19_06299 0.83 +0.2 65,240 + MPMX19_06299 0.83 -0.1 65,240 + MPMX19_06299 0.83 -0.5 65,240 + MPMX19_06299 0.83 -0.5 65,240 + MPMX19_06299 0.83 -0.6 65,240 + MPMX19_06299 0.83 -1.9 65,241 - MPMX19_06299 0.84 -1.4 65,241 - MPMX19_06299 0.84 +0.7 65,241 - MPMX19_06299 0.84 +0.3 65,241 - MPMX19_06299 0.84 -0.2 65,241 - MPMX19_06299 0.84 -0.6 65,241 - MPMX19_06299 0.84 -1.0
Or see this region's nucleotide sequence