Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06279 and MPMX19_06280 are separated by 261 nucleotides MPMX19_06280 and MPMX19_06281 are separated by 13 nucleotides MPMX19_06281 and MPMX19_06282 are separated by 946 nucleotides
MPMX19_06279: MPMX19_06279 - L-threonine kinase, at 27,690 to 28,655
_06279
MPMX19_06280: MPMX19_06280 - Leucine-responsive regulatory protein, at 28,917 to 29,390
_06280
MPMX19_06281: MPMX19_06281 - hypothetical protein, at 29,404 to 29,859
_06281
MPMX19_06282: MPMX19_06282 - ATP-dependent RecD-like DNA helicase, at 30,806 to 33,031
_06282
Position (kb) 29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.570 kb on - strand at 28.570 kb on - strand at 28.570 kb on - strand at 28.570 kb on - strand at 28.687 kb on + strand at 28.700 kb on + strand at 28.701 kb on - strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.736 kb on + strand at 28.737 kb on - strand at 28.737 kb on - strand at 28.737 kb on - strand at 28.795 kb on + strand at 28.813 kb on - strand at 29.217 kb on + strand, within MPMX19_06280 at 29.217 kb on + strand, within MPMX19_06280 at 29.217 kb on + strand, within MPMX19_06280 at 29.217 kb on + strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.305 kb on - strand, within MPMX19_06280 at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.412 kb on - strand at 29.412 kb on - strand at 29.412 kb on - strand at 29.462 kb on + strand, within MPMX19_06281 at 29.462 kb on + strand, within MPMX19_06281 at 29.462 kb on + strand, within MPMX19_06281 at 29.463 kb on - strand, within MPMX19_06281 at 29.463 kb on - strand, within MPMX19_06281 at 29.463 kb on - strand, within MPMX19_06281 at 29.638 kb on + strand, within MPMX19_06281 at 29.800 kb on + strand, within MPMX19_06281 at 29.801 kb on - strand, within MPMX19_06281 at 29.801 kb on - strand, within MPMX19_06281 at 29.801 kb on - strand, within MPMX19_06281 at 29.890 kb on + strand at 29.890 kb on + strand at 29.891 kb on - strand at 29.891 kb on - strand at 30.000 kb on + strand at 30.000 kb on + strand at 30.000 kb on + strand at 30.000 kb on + strand at 30.213 kb on + strand at 30.213 kb on + strand at 30.214 kb on - strand at 30.214 kb on - strand at 30.244 kb on + strand at 30.244 kb on + strand at 30.285 kb on + strand at 30.285 kb on + strand at 30.285 kb on + strand at 30.286 kb on - strand at 30.286 kb on - strand at 30.286 kb on - strand at 30.286 kb on - strand at 30.292 kb on + strand at 30.292 kb on + strand at 30.292 kb on + strand at 30.293 kb on - strand at 30.293 kb on - strand at 30.305 kb on + strand at 30.305 kb on + strand at 30.306 kb on - strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.308 kb on - strand at 30.308 kb on - strand at 30.308 kb on - strand at 30.308 kb on - strand at 30.308 kb on - strand at 30.313 kb on + strand at 30.314 kb on - strand at 30.339 kb on - strand at 30.339 kb on - strand at 30.433 kb on - strand at 30.538 kb on + strand at 30.538 kb on + strand at 30.539 kb on - strand at 30.616 kb on + strand at 30.617 kb on - strand at 30.617 kb on - strand at 30.617 kb on - strand at 30.617 kb on - strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.689 kb on - strand at 30.689 kb on - strand at 30.689 kb on - strand at 30.689 kb on - strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.723 kb on - strand at 30.723 kb on - strand at 30.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 28,479 + MPMX19_06279 0.82 -1.7 28,479 + MPMX19_06279 0.82 +1.3 28,479 + MPMX19_06279 0.82 +0.6 28,479 + MPMX19_06279 0.82 -0.9 28,479 + MPMX19_06279 0.82 +1.3 28,479 + MPMX19_06279 0.82 -1.0 28,479 + MPMX19_06279 0.82 -1.5 28,479 + MPMX19_06279 0.82 -0.5 28,479 + MPMX19_06279 0.82 +1.5 28,479 + MPMX19_06279 0.82 -0.4 28,479 + MPMX19_06279 0.82 -2.5 28,479 + MPMX19_06279 0.82 -1.9 28,479 + MPMX19_06279 0.82 +0.1 28,479 + MPMX19_06279 0.82 -2.4 28,479 + MPMX19_06279 0.82 +0.2 28,479 + MPMX19_06279 0.82 +0.7 28,479 + MPMX19_06279 0.82 -0.4 28,480 - MPMX19_06279 0.82 -1.0 28,480 - MPMX19_06279 0.82 +0.3 28,480 - MPMX19_06279 0.82 -0.4 28,480 - MPMX19_06279 0.82 -0.4 28,480 - MPMX19_06279 0.82 +0.7 28,480 - MPMX19_06279 0.82 +1.4 28,480 - MPMX19_06279 0.82 +1.6 28,480 - MPMX19_06279 0.82 -1.1 28,570 - -2.0 28,570 - +0.3 28,570 - +1.2 28,570 - -1.7 28,687 + -0.9 28,700 + -3.0 28,701 - -0.4 28,732 + -1.3 28,732 + -0.8 28,732 + +0.9 28,732 + +1.5 28,732 + -1.8 28,732 + -0.1 28,736 + -0.6 28,737 - -0.4 28,737 - +0.9 28,737 - -0.1 28,795 + -1.3 28,813 - +0.7 29,217 + MPMX19_06280 0.63 -0.2 29,217 + MPMX19_06280 0.63 -1.6 29,217 + MPMX19_06280 0.63 +1.0 29,217 + MPMX19_06280 0.63 +1.2 29,218 - MPMX19_06280 0.64 -0.1 29,218 - MPMX19_06280 0.64 -0.4 29,218 - MPMX19_06280 0.64 -0.1 29,218 - MPMX19_06280 0.64 +0.0 29,218 - MPMX19_06280 0.64 -0.7 29,241 + MPMX19_06280 0.68 -1.5 29,241 + MPMX19_06280 0.68 +1.9 29,241 + MPMX19_06280 0.68 -0.1 29,241 + MPMX19_06280 0.68 -0.4 29,241 + MPMX19_06280 0.68 -1.1 29,241 + MPMX19_06280 0.68 +0.3 29,242 - MPMX19_06280 0.69 +1.7 29,242 - MPMX19_06280 0.69 -0.4 29,242 - MPMX19_06280 0.69 -0.3 29,242 - MPMX19_06280 0.69 +0.3 29,242 - MPMX19_06280 0.69 -1.0 29,242 - MPMX19_06280 0.69 +0.4 29,242 - MPMX19_06280 0.69 +0.3 29,242 - MPMX19_06280 0.69 +0.2 29,242 - MPMX19_06280 0.69 +0.5 29,242 - MPMX19_06280 0.69 -1.8 29,304 + MPMX19_06280 0.82 -2.8 29,304 + MPMX19_06280 0.82 -0.3 29,304 + MPMX19_06280 0.82 -1.5 29,304 + MPMX19_06280 0.82 -1.7 29,304 + MPMX19_06280 0.82 +1.9 29,305 - MPMX19_06280 0.82 -0.6 29,411 + -0.4 29,411 + -0.5 29,411 + -1.6 29,411 + -1.6 29,411 + -0.5 29,412 - +0.0 29,412 - +0.2 29,412 - -1.4 29,462 + MPMX19_06281 0.13 +0.3 29,462 + MPMX19_06281 0.13 +0.6 29,462 + MPMX19_06281 0.13 +0.1 29,463 - MPMX19_06281 0.13 -0.7 29,463 - MPMX19_06281 0.13 -0.3 29,463 - MPMX19_06281 0.13 +0.5 29,638 + MPMX19_06281 0.51 -0.3 29,800 + MPMX19_06281 0.87 +1.0 29,801 - MPMX19_06281 0.87 +0.4 29,801 - MPMX19_06281 0.87 +0.9 29,801 - MPMX19_06281 0.87 -0.7 29,890 + -0.3 29,890 + -1.0 29,891 - -0.7 29,891 - -0.6 30,000 + -1.1 30,000 + +1.2 30,000 + -0.8 30,000 + +0.1 30,213 + +0.9 30,213 + -0.2 30,214 - +0.0 30,214 - -1.3 30,244 + -0.0 30,244 + -1.6 30,285 + -0.4 30,285 + -1.3 30,285 + -0.6 30,286 - -1.1 30,286 - -0.1 30,286 - +0.1 30,286 - -0.6 30,292 + -0.1 30,292 + +1.2 30,292 + +0.2 30,293 - -1.0 30,293 - +1.7 30,305 + -0.3 30,305 + -1.4 30,306 - -1.1 30,307 + -0.0 30,307 + -0.1 30,307 + +0.0 30,307 + +1.2 30,307 + -1.3 30,307 + -1.7 30,308 - +0.2 30,308 - +0.1 30,308 - -0.2 30,308 - +1.4 30,308 - -0.7 30,313 + +1.9 30,314 - -0.5 30,339 - +0.0 30,339 - +0.2 30,433 - -0.5 30,538 + -0.9 30,538 + -1.7 30,539 - +0.8 30,616 + +0.1 30,617 - -2.6 30,617 - +0.2 30,617 - -1.1 30,617 - -1.0 30,688 + +0.0 30,688 + -0.8 30,688 + +0.1 30,688 + -0.2 30,688 + +0.8 30,688 + -2.4 30,689 - -0.8 30,689 - -0.9 30,689 - +0.0 30,689 - -0.7 30,690 + -0.3 30,690 + +0.3 30,690 + +0.7 30,690 + -0.8 30,690 + -0.2 30,690 + +0.8 30,691 - -0.7 30,691 - +0.5 30,691 - +1.9 30,691 - -2.4 30,691 - +0.9 30,691 - -0.9 30,691 - -0.8 30,723 - -1.4 30,723 - -0.6 30,723 - +0.3
Or see this region's nucleotide sequence