Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06226 and MPMX19_06227 are separated by 48 nucleotides MPMX19_06227 and MPMX19_06228 are separated by 42 nucleotides
MPMX19_06226: MPMX19_06226 - Xylose transport system permease protein XylH, at 411,886 to 413,085
_06226
MPMX19_06227: MPMX19_06227 - L-arabinose 1-dehydrogenase (NAD(P)(+)), at 413,134 to 414,072
_06227
MPMX19_06228: MPMX19_06228 - hypothetical protein, at 414,115 to 415,695
_06228
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 412.264 kb on + strand, within MPMX19_06226 at 412.265 kb on - strand, within MPMX19_06226 at 412.276 kb on + strand, within MPMX19_06226 at 412.277 kb on - strand, within MPMX19_06226 at 412.277 kb on - strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.709 kb on - strand, within MPMX19_06226 at 412.709 kb on - strand, within MPMX19_06226 at 412.709 kb on - strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 413.065 kb on + strand at 413.065 kb on + strand at 413.065 kb on + strand at 413.065 kb on + strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.190 kb on + strand at 413.190 kb on + strand at 413.190 kb on + strand at 413.190 kb on + strand at 413.191 kb on - strand at 413.191 kb on - strand at 413.909 kb on + strand, within MPMX19_06227 at 413.938 kb on + strand, within MPMX19_06227 at 413.938 kb on + strand, within MPMX19_06227 at 413.938 kb on + strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.951 kb on - strand, within MPMX19_06227 at 413.951 kb on - strand, within MPMX19_06227 at 414.070 kb on + strand at 414.070 kb on + strand at 414.070 kb on + strand at 414.070 kb on + strand at 414.071 kb on - strand at 414.071 kb on - strand at 414.071 kb on - strand at 414.071 kb on - strand at 414.098 kb on + strand at 414.098 kb on + strand at 414.099 kb on - strand at 414.488 kb on - strand, within MPMX19_06228 at 414.488 kb on - strand, within MPMX19_06228
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 412,264 + MPMX19_06226 0.32 -1.3 412,265 - MPMX19_06226 0.32 +0.2 412,276 + MPMX19_06226 0.33 -0.6 412,277 - MPMX19_06226 0.33 +0.4 412,277 - MPMX19_06226 0.33 -0.9 412,591 + MPMX19_06226 0.59 -0.9 412,591 + MPMX19_06226 0.59 -0.9 412,591 + MPMX19_06226 0.59 +0.8 412,591 + MPMX19_06226 0.59 +0.8 412,591 + MPMX19_06226 0.59 -1.3 412,592 - MPMX19_06226 0.59 -1.2 412,592 - MPMX19_06226 0.59 +0.0 412,592 - MPMX19_06226 0.59 +0.6 412,592 - MPMX19_06226 0.59 -0.6 412,592 - MPMX19_06226 0.59 -0.4 412,592 - MPMX19_06226 0.59 -0.8 412,592 - MPMX19_06226 0.59 +2.8 412,592 - MPMX19_06226 0.59 -1.5 412,592 - MPMX19_06226 0.59 -1.1 412,592 - MPMX19_06226 0.59 -0.2 412,615 + MPMX19_06226 0.61 -0.6 412,615 + MPMX19_06226 0.61 -0.7 412,615 + MPMX19_06226 0.61 -0.7 412,615 + MPMX19_06226 0.61 -0.8 412,615 + MPMX19_06226 0.61 +0.0 412,616 - MPMX19_06226 0.61 +1.0 412,616 - MPMX19_06226 0.61 +0.2 412,616 - MPMX19_06226 0.61 -0.6 412,616 - MPMX19_06226 0.61 +1.0 412,616 - MPMX19_06226 0.61 +0.2 412,616 - MPMX19_06226 0.61 -0.7 412,616 - MPMX19_06226 0.61 +0.8 412,616 - MPMX19_06226 0.61 -2.4 412,616 - MPMX19_06226 0.61 -0.4 412,616 - MPMX19_06226 0.61 -0.1 412,616 - MPMX19_06226 0.61 -1.6 412,666 + MPMX19_06226 0.65 +0.5 412,666 + MPMX19_06226 0.65 -1.7 412,666 + MPMX19_06226 0.65 +0.4 412,666 + MPMX19_06226 0.65 +0.2 412,666 + MPMX19_06226 0.65 +0.0 412,666 + MPMX19_06226 0.65 -1.2 412,666 + MPMX19_06226 0.65 -1.9 412,666 + MPMX19_06226 0.65 -0.8 412,667 - MPMX19_06226 0.65 -0.1 412,667 - MPMX19_06226 0.65 +0.9 412,667 - MPMX19_06226 0.65 +1.2 412,667 - MPMX19_06226 0.65 +0.3 412,667 - MPMX19_06226 0.65 +0.2 412,667 - MPMX19_06226 0.65 -1.2 412,667 - MPMX19_06226 0.65 +0.8 412,667 - MPMX19_06226 0.65 +0.3 412,667 - MPMX19_06226 0.65 -0.5 412,667 - MPMX19_06226 0.65 -0.5 412,667 - MPMX19_06226 0.65 +0.0 412,667 - MPMX19_06226 0.65 +0.1 412,667 - MPMX19_06226 0.65 +0.8 412,708 + MPMX19_06226 0.69 -1.0 412,708 + MPMX19_06226 0.69 +0.1 412,708 + MPMX19_06226 0.69 +0.6 412,708 + MPMX19_06226 0.69 -0.2 412,708 + MPMX19_06226 0.69 +0.3 412,708 + MPMX19_06226 0.69 -0.5 412,708 + MPMX19_06226 0.69 -0.5 412,709 - MPMX19_06226 0.69 -0.9 412,709 - MPMX19_06226 0.69 -0.5 412,709 - MPMX19_06226 0.69 -0.6 412,774 + MPMX19_06226 0.74 -0.6 412,774 + MPMX19_06226 0.74 +0.9 412,774 + MPMX19_06226 0.74 -1.2 412,774 + MPMX19_06226 0.74 -0.2 412,774 + MPMX19_06226 0.74 -0.8 412,774 + MPMX19_06226 0.74 +0.3 412,774 + MPMX19_06226 0.74 -1.9 412,774 + MPMX19_06226 0.74 -1.4 412,774 + MPMX19_06226 0.74 +0.2 412,774 + MPMX19_06226 0.74 -0.2 412,774 + MPMX19_06226 0.74 +1.1 412,774 + MPMX19_06226 0.74 -0.9 412,774 + MPMX19_06226 0.74 +0.6 412,774 + MPMX19_06226 0.74 -1.2 412,774 + MPMX19_06226 0.74 -0.0 412,775 - MPMX19_06226 0.74 -0.2 412,775 - MPMX19_06226 0.74 -0.4 412,775 - MPMX19_06226 0.74 -1.2 412,775 - MPMX19_06226 0.74 +0.2 412,775 - MPMX19_06226 0.74 -0.6 412,775 - MPMX19_06226 0.74 +0.2 412,775 - MPMX19_06226 0.74 +0.2 412,775 - MPMX19_06226 0.74 +0.8 412,775 - MPMX19_06226 0.74 +0.8 413,065 + +0.9 413,065 + -0.2 413,065 + +0.4 413,065 + -0.2 413,066 - -0.2 413,066 - -0.6 413,066 - -1.2 413,066 - -0.2 413,066 - +0.6 413,066 - +0.2 413,066 - +1.0 413,066 - +1.0 413,066 - -0.7 413,127 + -0.5 413,127 + +0.4 413,127 + -0.3 413,127 + +0.2 413,127 + +0.0 413,127 + -0.4 413,127 + +0.4 413,127 + -0.0 413,127 + -0.1 413,127 + -0.4 413,127 + -0.6 413,128 - +0.8 413,128 - +0.3 413,128 - +0.5 413,128 - -0.3 413,128 - -0.7 413,128 - -1.6 413,128 - -0.6 413,128 - -0.4 413,190 + -1.9 413,190 + -0.5 413,190 + +0.6 413,190 + -0.6 413,191 - +0.1 413,191 - +0.1 413,909 + MPMX19_06227 0.83 -0.1 413,938 + MPMX19_06227 0.86 +0.5 413,938 + MPMX19_06227 0.86 +2.4 413,938 + MPMX19_06227 0.86 -1.6 413,939 - MPMX19_06227 0.86 -1.1 413,939 - MPMX19_06227 0.86 -0.0 413,939 - MPMX19_06227 0.86 +1.3 413,939 - MPMX19_06227 0.86 +1.8 413,939 - MPMX19_06227 0.86 -2.7 413,939 - MPMX19_06227 0.86 +1.8 413,939 - MPMX19_06227 0.86 -0.2 413,939 - MPMX19_06227 0.86 -0.4 413,950 + MPMX19_06227 0.87 -1.0 413,950 + MPMX19_06227 0.87 +0.2 413,950 + MPMX19_06227 0.87 +0.2 413,950 + MPMX19_06227 0.87 +0.6 413,950 + MPMX19_06227 0.87 +0.2 413,950 + MPMX19_06227 0.87 -0.2 413,951 - MPMX19_06227 0.87 +0.3 413,951 - MPMX19_06227 0.87 -0.7 414,070 + -0.9 414,070 + +1.0 414,070 + +0.3 414,070 + -1.3 414,071 - -0.2 414,071 - +0.8 414,071 - -0.6 414,071 - -1.0 414,098 + -0.6 414,098 + -1.9 414,099 - -0.2 414,488 - MPMX19_06228 0.24 +1.2 414,488 - MPMX19_06228 0.24 -0.2
Or see this region's nucleotide sequence