Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06196 and MPMX19_06197 overlap by 4 nucleotides MPMX19_06197 and MPMX19_06198 are separated by 72 nucleotides MPMX19_06198 and MPMX19_06199 are separated by 57 nucleotides
MPMX19_06196: MPMX19_06196 - Flagellum-specific ATP synthase, at 383,567 to 384,934
_06196
MPMX19_06197: MPMX19_06197 - hypothetical protein, at 384,931 to 385,536
_06197
MPMX19_06198: MPMX19_06198 - hypothetical protein, at 385,609 to 385,992
_06198
MPMX19_06199: MPMX19_06199 - GTPase HflX, at 386,050 to 387,396
_06199
Position (kb) 384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.435 kb on - strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.779 kb on + strand, within MPMX19_06196 at 384.779 kb on + strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.942 kb on + strand at 384.943 kb on - strand at 384.943 kb on - strand at 385.100 kb on - strand, within MPMX19_06197 at 385.100 kb on - strand, within MPMX19_06197 at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.990 kb on + strand at 385.990 kb on + strand at 385.990 kb on + strand at 385.991 kb on - strand at 386.171 kb on + strand at 386.171 kb on + strand at 386.171 kb on + strand at 386.172 kb on - strand at 386.172 kb on - strand at 386.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 384,434 + MPMX19_06196 0.63 -1.7 384,434 + MPMX19_06196 0.63 -1.4 384,434 + MPMX19_06196 0.63 -0.7 384,434 + MPMX19_06196 0.63 -0.4 384,435 - MPMX19_06196 0.63 -1.4 384,743 + MPMX19_06196 0.86 -0.7 384,743 + MPMX19_06196 0.86 -0.9 384,743 + MPMX19_06196 0.86 -1.6 384,743 + MPMX19_06196 0.86 +0.0 384,743 + MPMX19_06196 0.86 +0.1 384,743 + MPMX19_06196 0.86 +1.2 384,743 + MPMX19_06196 0.86 +0.0 384,743 + MPMX19_06196 0.86 +0.9 384,744 - MPMX19_06196 0.86 -0.7 384,744 - MPMX19_06196 0.86 +1.8 384,744 - MPMX19_06196 0.86 -1.0 384,744 - MPMX19_06196 0.86 -0.4 384,744 - MPMX19_06196 0.86 -0.4 384,744 - MPMX19_06196 0.86 +0.6 384,744 - MPMX19_06196 0.86 +0.0 384,744 - MPMX19_06196 0.86 +0.3 384,744 - MPMX19_06196 0.86 -0.0 384,779 + MPMX19_06196 0.89 +0.0 384,779 + MPMX19_06196 0.89 -0.3 384,780 - MPMX19_06196 0.89 -0.6 384,780 - MPMX19_06196 0.89 -1.4 384,780 - MPMX19_06196 0.89 -1.2 384,942 + -1.7 384,943 - +0.4 384,943 - -1.1 385,100 - MPMX19_06197 0.28 +0.5 385,100 - MPMX19_06197 0.28 +0.1 385,477 + +0.1 385,477 + -0.8 385,477 + -0.5 385,477 + -2.9 385,477 + -1.0 385,477 + -1.4 385,477 + -1.1 385,477 + -0.2 385,478 - +1.2 385,478 - -1.7 385,478 - +1.2 385,478 - +0.3 385,478 - -0.0 385,478 - +0.2 385,750 + MPMX19_06198 0.37 -0.7 385,750 + MPMX19_06198 0.37 -0.6 385,750 + MPMX19_06198 0.37 +0.1 385,750 + MPMX19_06198 0.37 -0.4 385,750 + MPMX19_06198 0.37 -0.3 385,750 + MPMX19_06198 0.37 -0.3 385,750 + MPMX19_06198 0.37 -0.5 385,750 + MPMX19_06198 0.37 +0.2 385,750 + MPMX19_06198 0.37 -0.1 385,750 + MPMX19_06198 0.37 +0.3 385,751 - MPMX19_06198 0.37 -0.3 385,751 - MPMX19_06198 0.37 +0.8 385,751 - MPMX19_06198 0.37 -1.0 385,751 - MPMX19_06198 0.37 -0.0 385,751 - MPMX19_06198 0.37 +0.4 385,966 + -0.4 385,966 + +0.3 385,966 + +0.1 385,966 + -0.3 385,966 + -0.9 385,966 + -0.9 385,966 + +0.4 385,966 + +1.3 385,966 + -1.2 385,967 - +0.4 385,967 - -0.2 385,967 - -1.0 385,967 - +0.2 385,967 - -0.8 385,967 - +0.3 385,967 - -0.1 385,967 - -0.3 385,967 - +0.8 385,967 - -1.6 385,990 + -0.8 385,990 + -0.7 385,990 + +0.3 385,991 - +0.1 386,171 + -0.2 386,171 + -1.8 386,171 + -0.7 386,172 - +0.2 386,172 - -0.2 386,172 - -0.7
Or see this region's nucleotide sequence