Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06177 and MPMX19_06178 overlap by 4 nucleotides MPMX19_06178 and MPMX19_06179 overlap by 4 nucleotides MPMX19_06179 and MPMX19_06180 are separated by 115 nucleotides
MPMX19_06177: MPMX19_06177 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 368,058 to 368,717
_06177
MPMX19_06178: MPMX19_06178 - hypothetical protein, at 368,714 to 369,148
_06178
MPMX19_06179: MPMX19_06179 - putative SURF1-like protein, at 369,145 to 369,930
_06179
MPMX19_06180: MPMX19_06180 - Sensor histidine kinase RegB, at 370,046 to 371,323
_06180
Position (kb) 369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 368.849 kb on + strand, within MPMX19_06178 at 369.694 kb on + strand, within MPMX19_06179 at 369.694 kb on + strand, within MPMX19_06179 at 369.752 kb on - strand, within MPMX19_06179 at 369.841 kb on + strand, within MPMX19_06179 at 369.969 kb on + strand at 369.970 kb on - strand at 369.989 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.998 kb on - strand at 369.998 kb on - strand at 369.998 kb on - strand at 369.998 kb on - strand at 369.998 kb on - strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 370.000 kb on - strand at 370.000 kb on - strand at 370.000 kb on - strand at 370.000 kb on - strand at 370.000 kb on - strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.310 kb on + strand, within MPMX19_06180 at 370.310 kb on + strand, within MPMX19_06180 at 370.349 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 368,849 + MPMX19_06178 0.31 -0.8 369,694 + MPMX19_06179 0.70 -1.5 369,694 + MPMX19_06179 0.70 -0.0 369,752 - MPMX19_06179 0.77 -0.4 369,841 + MPMX19_06179 0.89 -0.2 369,969 + +0.4 369,970 - -1.6 369,989 + -0.7 369,997 + -0.6 369,997 + -0.2 369,997 + -0.2 369,997 + +1.3 369,997 + +0.0 369,997 + -0.4 369,997 + -0.0 369,997 + -0.9 369,997 + +1.0 369,997 + -0.3 369,997 + -2.6 369,998 - -1.4 369,998 - -0.2 369,998 - -0.4 369,998 - -2.0 369,998 - -0.5 369,999 + +1.1 369,999 + +0.7 369,999 + -1.0 369,999 + -0.7 369,999 + +0.6 369,999 + +1.3 369,999 + -1.2 369,999 + -0.0 369,999 + -0.2 369,999 + -1.6 369,999 + -0.5 369,999 + +0.3 369,999 + -1.6 369,999 + -1.6 369,999 + +1.4 369,999 + +0.4 369,999 + -0.6 370,000 - +0.6 370,000 - +0.0 370,000 - +1.8 370,000 - +0.8 370,000 - +2.8 370,001 + +1.0 370,001 + -1.9 370,001 + -0.2 370,001 + +1.1 370,001 + +0.7 370,001 + -1.0 370,001 + +0.8 370,001 + -1.2 370,001 + -1.2 370,001 + -0.2 370,001 + -1.6 370,001 + +0.3 370,001 + +0.4 370,001 + -0.1 370,001 + +0.2 370,002 - -1.9 370,002 - +0.2 370,002 - -1.2 370,002 - +1.8 370,002 - +0.0 370,002 - -0.7 370,002 - +0.7 370,002 - -0.1 370,310 + MPMX19_06180 0.21 -0.9 370,310 + MPMX19_06180 0.21 +0.2 370,349 + MPMX19_06180 0.24 +1.3 370,478 + MPMX19_06180 0.34 -1.4 370,478 + MPMX19_06180 0.34 -1.3 370,478 + MPMX19_06180 0.34 +0.4 370,478 + MPMX19_06180 0.34 -0.9
Or see this region's nucleotide sequence