Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06034

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06033 and MPMX19_06034 are separated by 5 nucleotidesMPMX19_06034 and MPMX19_06035 are separated by 2 nucleotides MPMX19_06033: MPMX19_06033 - Phosphate transport system permease protein PstC, at 187,455 to 188,438 _06033 MPMX19_06034: MPMX19_06034 - Phosphate transport system permease protein PstA, at 188,444 to 189,325 _06034 MPMX19_06035: MPMX19_06035 - Phosphate import ATP-binding protein PstB, at 189,328 to 190,191 _06035 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 187.710 kb on + strand, within MPMX19_06033at 187.710 kb on + strand, within MPMX19_06033at 187.710 kb on + strand, within MPMX19_06033at 187.711 kb on - strand, within MPMX19_06033at 187.711 kb on - strand, within MPMX19_06033at 187.711 kb on - strand, within MPMX19_06033at 187.723 kb on + strand, within MPMX19_06033at 187.863 kb on + strand, within MPMX19_06033at 187.863 kb on + strand, within MPMX19_06033at 187.863 kb on + strand, within MPMX19_06033at 187.864 kb on - strand, within MPMX19_06033at 187.864 kb on - strand, within MPMX19_06033at 187.864 kb on - strand, within MPMX19_06033at 187.864 kb on - strand, within MPMX19_06033at 187.931 kb on + strand, within MPMX19_06033at 187.931 kb on + strand, within MPMX19_06033at 187.931 kb on + strand, within MPMX19_06033at 187.932 kb on - strand, within MPMX19_06033at 187.932 kb on - strand, within MPMX19_06033at 188.148 kb on + strand, within MPMX19_06033at 188.148 kb on + strand, within MPMX19_06033at 188.328 kb on + strand, within MPMX19_06033at 188.328 kb on + strand, within MPMX19_06033at 188.328 kb on + strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.492 kb on + strandat 188.492 kb on + strandat 188.492 kb on + strandat 188.492 kb on + strandat 188.493 kb on - strandat 188.594 kb on + strand, within MPMX19_06034at 188.594 kb on + strand, within MPMX19_06034at 188.594 kb on + strand, within MPMX19_06034at 188.594 kb on + strand, within MPMX19_06034at 188.595 kb on - strand, within MPMX19_06034at 188.595 kb on - strand, within MPMX19_06034at 188.595 kb on - strand, within MPMX19_06034at 188.595 kb on - strand, within MPMX19_06034at 188.750 kb on + strand, within MPMX19_06034at 188.750 kb on + strand, within MPMX19_06034at 188.750 kb on + strand, within MPMX19_06034at 188.750 kb on + strand, within MPMX19_06034at 188.751 kb on - strand, within MPMX19_06034at 188.751 kb on - strand, within MPMX19_06034at 188.774 kb on - strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.839 kb on - strand, within MPMX19_06034at 188.839 kb on - strand, within MPMX19_06034at 188.839 kb on - strand, within MPMX19_06034at 188.853 kb on - strand, within MPMX19_06034at 188.853 kb on - strand, within MPMX19_06034at 189.058 kb on + strand, within MPMX19_06034at 189.058 kb on + strand, within MPMX19_06034at 189.058 kb on + strand, within MPMX19_06034at 189.058 kb on + strand, within MPMX19_06034at 189.059 kb on - strand, within MPMX19_06034at 189.059 kb on - strand, within MPMX19_06034at 189.059 kb on - strand, within MPMX19_06034at 189.189 kb on + strand, within MPMX19_06034at 189.190 kb on - strand, within MPMX19_06034at 189.212 kb on + strand, within MPMX19_06034at 189.213 kb on - strand, within MPMX19_06034at 189.213 kb on - strand, within MPMX19_06034at 189.323 kb on + strandat 189.323 kb on + strandat 189.323 kb on + strandat 189.323 kb on + strandat 189.323 kb on + strandat 189.324 kb on - strandat 189.324 kb on - strandat 189.324 kb on - strandat 189.475 kb on + strand, within MPMX19_06035at 189.476 kb on - strand, within MPMX19_06035at 189.476 kb on - strand, within MPMX19_06035at 189.476 kb on - strand, within MPMX19_06035at 189.517 kb on + strand, within MPMX19_06035at 189.518 kb on - strand, within MPMX19_06035at 189.518 kb on - strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.605 kb on - strand, within MPMX19_06035at 189.739 kb on + strand, within MPMX19_06035at 189.739 kb on + strand, within MPMX19_06035at 189.739 kb on + strand, within MPMX19_06035at 189.740 kb on - strand, within MPMX19_06035at 189.740 kb on - strand, within MPMX19_06035at 189.769 kb on + strand, within MPMX19_06035at 189.770 kb on - strand, within MPMX19_06035at 190.024 kb on + strand, within MPMX19_06035at 190.024 kb on + strand, within MPMX19_06035at 190.025 kb on - strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.094 kb on - strand, within MPMX19_06035at 190.094 kb on - strand, within MPMX19_06035at 190.094 kb on - strand, within MPMX19_06035at 190.168 kb on + strandat 190.169 kb on - strandat 190.169 kb on - strandat 190.169 kb on - strandat 190.169 kb on - strandat 190.192 kb on + strandat 190.192 kb on + strandat 190.193 kb on - strandat 190.286 kb on + strandat 190.286 kb on + strandat 190.286 kb on + strandat 190.287 kb on - strandat 190.287 kb on - strandat 190.287 kb on - strandat 190.287 kb on - strandat 190.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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187,710 + MPMX19_06033 0.26 -1.6
187,710 + MPMX19_06033 0.26 -1.2
187,710 + MPMX19_06033 0.26 +1.1
187,711 - MPMX19_06033 0.26 -2.2
187,711 - MPMX19_06033 0.26 -1.4
187,711 - MPMX19_06033 0.26 -1.1
187,723 + MPMX19_06033 0.27 -0.8
187,863 + MPMX19_06033 0.41 +0.1
187,863 + MPMX19_06033 0.41 +0.2
187,863 + MPMX19_06033 0.41 -1.2
187,864 - MPMX19_06033 0.42 +0.9
187,864 - MPMX19_06033 0.42 +0.4
187,864 - MPMX19_06033 0.42 -1.1
187,864 - MPMX19_06033 0.42 -1.3
187,931 + MPMX19_06033 0.48 +0.8
187,931 + MPMX19_06033 0.48 -0.2
187,931 + MPMX19_06033 0.48 -0.1
187,932 - MPMX19_06033 0.48 -0.2
187,932 - MPMX19_06033 0.48 -1.3
188,148 + MPMX19_06033 0.70 -0.7
188,148 + MPMX19_06033 0.70 +0.2
188,328 + MPMX19_06033 0.89 -0.7
188,328 + MPMX19_06033 0.89 +0.3
188,328 + MPMX19_06033 0.89 -0.6
188,329 - MPMX19_06033 0.89 -0.8
188,329 - MPMX19_06033 0.89 +1.0
188,329 - MPMX19_06033 0.89 -0.8
188,329 - MPMX19_06033 0.89 -0.6
188,329 - MPMX19_06033 0.89 -1.4
188,329 - MPMX19_06033 0.89 -0.2
188,329 - MPMX19_06033 0.89 +0.3
188,492 + +1.3
188,492 + -1.1
188,492 + -0.2
188,492 + -0.2
188,493 - -0.8
188,594 + MPMX19_06034 0.17 -1.5
188,594 + MPMX19_06034 0.17 +0.8
188,594 + MPMX19_06034 0.17 -1.8
188,594 + MPMX19_06034 0.17 -0.9
188,595 - MPMX19_06034 0.17 +0.8
188,595 - MPMX19_06034 0.17 -0.2
188,595 - MPMX19_06034 0.17 -0.2
188,595 - MPMX19_06034 0.17 -0.2
188,750 + MPMX19_06034 0.35 -1.7
188,750 + MPMX19_06034 0.35 -0.7
188,750 + MPMX19_06034 0.35 -1.8
188,750 + MPMX19_06034 0.35 +0.5
188,751 - MPMX19_06034 0.35 +0.8
188,751 - MPMX19_06034 0.35 +0.5
188,774 - MPMX19_06034 0.37 +0.6
188,838 + MPMX19_06034 0.45 -0.1
188,838 + MPMX19_06034 0.45 -1.6
188,838 + MPMX19_06034 0.45 -0.4
188,838 + MPMX19_06034 0.45 -0.6
188,838 + MPMX19_06034 0.45 -0.8
188,839 - MPMX19_06034 0.45 -1.4
188,839 - MPMX19_06034 0.45 +0.9
188,839 - MPMX19_06034 0.45 +0.5
188,853 - MPMX19_06034 0.46 -0.6
188,853 - MPMX19_06034 0.46 -0.2
189,058 + MPMX19_06034 0.70 -1.8
189,058 + MPMX19_06034 0.70 -1.1
189,058 + MPMX19_06034 0.70 +0.4
189,058 + MPMX19_06034 0.70 -0.2
189,059 - MPMX19_06034 0.70 -0.8
189,059 - MPMX19_06034 0.70 -0.4
189,059 - MPMX19_06034 0.70 +0.6
189,189 + MPMX19_06034 0.84 -1.2
189,190 - MPMX19_06034 0.85 -0.7
189,212 + MPMX19_06034 0.87 -0.8
189,213 - MPMX19_06034 0.87 +0.8
189,213 - MPMX19_06034 0.87 -0.8
189,323 + -0.2
189,323 + -0.6
189,323 + -0.4
189,323 + +0.9
189,323 + -0.9
189,324 - +0.0
189,324 - +0.2
189,324 - -2.2
189,475 + MPMX19_06035 0.17 -0.1
189,476 - MPMX19_06035 0.17 -0.4
189,476 - MPMX19_06035 0.17 -0.8
189,476 - MPMX19_06035 0.17 +0.2
189,517 + MPMX19_06035 0.22 -0.6
189,518 - MPMX19_06035 0.22 +1.1
189,518 - MPMX19_06035 0.22 +0.2
189,595 + MPMX19_06035 0.31 +0.6
189,595 + MPMX19_06035 0.31 -2.5
189,595 + MPMX19_06035 0.31 -1.4
189,595 + MPMX19_06035 0.31 -1.4
189,595 + MPMX19_06035 0.31 -1.8
189,595 + MPMX19_06035 0.31 -0.1
189,595 + MPMX19_06035 0.31 +1.6
189,595 + MPMX19_06035 0.31 +0.1
189,595 + MPMX19_06035 0.31 -0.6
189,596 - MPMX19_06035 0.31 +0.5
189,596 - MPMX19_06035 0.31 -1.2
189,596 - MPMX19_06035 0.31 -2.2
189,596 - MPMX19_06035 0.31 +0.3
189,596 - MPMX19_06035 0.31 -0.5
189,596 - MPMX19_06035 0.31 +2.2
189,596 - MPMX19_06035 0.31 +0.3
189,596 - MPMX19_06035 0.31 -0.1
189,605 - MPMX19_06035 0.32 -1.4
189,739 + MPMX19_06035 0.48 -0.2
189,739 + MPMX19_06035 0.48 -1.1
189,739 + MPMX19_06035 0.48 -0.6
189,740 - MPMX19_06035 0.48 +1.0
189,740 - MPMX19_06035 0.48 -0.6
189,769 + MPMX19_06035 0.51 -2.2
189,770 - MPMX19_06035 0.51 -0.9
190,024 + MPMX19_06035 0.81 -0.4
190,024 + MPMX19_06035 0.81 +2.1
190,025 - MPMX19_06035 0.81 -0.4
190,093 + MPMX19_06035 0.89 -2.2
190,093 + MPMX19_06035 0.89 -0.7
190,093 + MPMX19_06035 0.89 -1.5
190,093 + MPMX19_06035 0.89 -0.8
190,093 + MPMX19_06035 0.89 -1.6
190,093 + MPMX19_06035 0.89 -1.2
190,094 - MPMX19_06035 0.89 +1.3
190,094 - MPMX19_06035 0.89 -0.2
190,094 - MPMX19_06035 0.89 -0.7
190,168 + -0.3
190,169 - -0.1
190,169 - -0.7
190,169 - +1.0
190,169 - -0.2
190,192 + -1.6
190,192 + +0.1
190,193 - -2.4
190,286 + -0.4
190,286 + -1.7
190,286 + -0.2
190,287 - -0.2
190,287 - -1.1
190,287 - +0.5
190,287 - +0.1
190,316 + +0.5

Or see this region's nucleotide sequence