Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05998

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05996 and MPMX19_05997 are separated by 55 nucleotidesMPMX19_05997 and MPMX19_05998 overlap by 4 nucleotidesMPMX19_05998 and MPMX19_05999 are separated by 171 nucleotidesMPMX19_05999 and MPMX19_06000 are separated by 7 nucleotides MPMX19_05996: MPMX19_05996 - Dodecaprenyl-phosphate galacturonate synthase, at 150,713 to 151,474 _05996 MPMX19_05997: MPMX19_05997 - hypothetical protein, at 151,530 to 151,865 _05997 MPMX19_05998: MPMX19_05998 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 151,862 to 153,568 _05998 MPMX19_05999: MPMX19_05999 - hypothetical protein, at 153,740 to 154,138 _05999 MPMX19_06000: MPMX19_06000 - Fructokinase, at 154,146 to 155,135 _06000 Position (kb) 151 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.329 kb on - strand, within MPMX19_05996at 151.329 kb on - strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.424 kb on + strandat 151.424 kb on + strandat 151.692 kb on + strand, within MPMX19_05997at 151.693 kb on - strand, within MPMX19_05997at 151.729 kb on - strand, within MPMX19_05997at 151.738 kb on - strand, within MPMX19_05997at 151.788 kb on + strand, within MPMX19_05997at 151.789 kb on - strand, within MPMX19_05997at 151.803 kb on + strand, within MPMX19_05997at 151.804 kb on - strand, within MPMX19_05997at 151.804 kb on - strand, within MPMX19_05997at 151.804 kb on - strand, within MPMX19_05997at 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.923 kb on - strandat 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.099 kb on + strand, within MPMX19_05998at 152.100 kb on - strand, within MPMX19_05998at 152.100 kb on - strand, within MPMX19_05998at 152.387 kb on + strand, within MPMX19_05998at 152.388 kb on - strand, within MPMX19_05998at 152.388 kb on - strand, within MPMX19_05998at 152.729 kb on + strand, within MPMX19_05998at 152.729 kb on + strand, within MPMX19_05998at 152.730 kb on - strand, within MPMX19_05998at 152.737 kb on + strand, within MPMX19_05998at 152.738 kb on - strand, within MPMX19_05998at 152.895 kb on - strand, within MPMX19_05998at 153.204 kb on - strand, within MPMX19_05998at 153.204 kb on - strand, within MPMX19_05998at 153.204 kb on - strand, within MPMX19_05998at 153.204 kb on - strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.216 kb on - strand, within MPMX19_05998at 153.216 kb on - strand, within MPMX19_05998at 153.216 kb on - strand, within MPMX19_05998at 153.515 kb on + strandat 153.515 kb on + strandat 153.515 kb on + strandat 153.515 kb on + strandat 153.515 kb on + strandat 153.515 kb on + strandat 153.516 kb on - strandat 153.516 kb on - strandat 153.548 kb on + strandat 153.548 kb on + strandat 153.587 kb on + strandat 153.587 kb on + strandat 153.588 kb on - strandat 153.602 kb on - strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.845 kb on + strand, within MPMX19_05999at 153.845 kb on + strand, within MPMX19_05999at 153.845 kb on + strand, within MPMX19_05999at 153.845 kb on + strand, within MPMX19_05999at 153.845 kb on + strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.860 kb on + strand, within MPMX19_05999at 153.860 kb on + strand, within MPMX19_05999at 153.860 kb on + strand, within MPMX19_05999at 153.860 kb on + strand, within MPMX19_05999at 153.861 kb on - strand, within MPMX19_05999at 153.861 kb on - strand, within MPMX19_05999at 153.861 kb on - strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.078 kb on + strand, within MPMX19_05999at 154.078 kb on + strand, within MPMX19_05999at 154.078 kb on + strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.289 kb on - strand, within MPMX19_06000at 154.289 kb on - strand, within MPMX19_06000at 154.549 kb on + strand, within MPMX19_06000at 154.549 kb on + strand, within MPMX19_06000at 154.549 kb on + strand, within MPMX19_06000at 154.549 kb on + strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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151,328 + MPMX19_05996 0.81 +0.2
151,328 + MPMX19_05996 0.81 +0.4
151,328 + MPMX19_05996 0.81 -1.4
151,328 + MPMX19_05996 0.81 +0.3
151,328 + MPMX19_05996 0.81 -1.8
151,328 + MPMX19_05996 0.81 -2.1
151,328 + MPMX19_05996 0.81 -0.1
151,328 + MPMX19_05996 0.81 -0.7
151,328 + MPMX19_05996 0.81 -1.6
151,328 + MPMX19_05996 0.81 +0.2
151,328 + MPMX19_05996 0.81 -0.4
151,328 + MPMX19_05996 0.81 -0.2
151,328 + MPMX19_05996 0.81 +2.2
151,329 - MPMX19_05996 0.81 +0.8
151,329 - MPMX19_05996 0.81 -1.6
151,373 + MPMX19_05996 0.87 -1.4
151,373 + MPMX19_05996 0.87 -0.6
151,373 + MPMX19_05996 0.87 +0.4
151,424 + +0.4
151,424 + -1.2
151,692 + MPMX19_05997 0.48 -1.6
151,693 - MPMX19_05997 0.49 +0.4
151,729 - MPMX19_05997 0.59 -0.2
151,738 - MPMX19_05997 0.62 +0.5
151,788 + MPMX19_05997 0.77 -0.1
151,789 - MPMX19_05997 0.77 +0.9
151,803 + MPMX19_05997 0.81 -1.1
151,804 - MPMX19_05997 0.82 -1.6
151,804 - MPMX19_05997 0.82 -0.4
151,804 - MPMX19_05997 0.82 -0.2
151,922 + -1.8
151,922 + +0.5
151,922 + +0.0
151,922 + +0.8
151,922 + +0.5
151,922 + -0.6
151,922 + +1.0
151,923 - +0.8
152,045 + MPMX19_05998 0.11 -1.1
152,045 + MPMX19_05998 0.11 -2.6
152,045 + MPMX19_05998 0.11 +1.2
152,045 + MPMX19_05998 0.11 -0.1
152,045 + MPMX19_05998 0.11 -0.8
152,045 + MPMX19_05998 0.11 +0.1
152,045 + MPMX19_05998 0.11 +1.2
152,045 + MPMX19_05998 0.11 -1.4
152,045 + MPMX19_05998 0.11 -1.6
152,045 + MPMX19_05998 0.11 +0.8
152,045 + MPMX19_05998 0.11 -1.4
152,045 + MPMX19_05998 0.11 -1.4
152,045 + MPMX19_05998 0.11 -1.3
152,046 - MPMX19_05998 0.11 -0.1
152,046 - MPMX19_05998 0.11 -1.2
152,046 - MPMX19_05998 0.11 -1.7
152,046 - MPMX19_05998 0.11 +0.0
152,046 - MPMX19_05998 0.11 -1.8
152,046 - MPMX19_05998 0.11 -1.6
152,046 - MPMX19_05998 0.11 -0.6
152,046 - MPMX19_05998 0.11 -1.7
152,046 - MPMX19_05998 0.11 -0.6
152,046 - MPMX19_05998 0.11 +0.6
152,046 - MPMX19_05998 0.11 -0.7
152,046 - MPMX19_05998 0.11 -0.6
152,099 + MPMX19_05998 0.14 -1.2
152,100 - MPMX19_05998 0.14 +0.2
152,100 - MPMX19_05998 0.14 +0.8
152,387 + MPMX19_05998 0.31 -1.4
152,388 - MPMX19_05998 0.31 +0.2
152,388 - MPMX19_05998 0.31 +0.0
152,729 + MPMX19_05998 0.51 -0.4
152,729 + MPMX19_05998 0.51 -0.2
152,730 - MPMX19_05998 0.51 -1.9
152,737 + MPMX19_05998 0.51 -0.2
152,738 - MPMX19_05998 0.51 +0.1
152,895 - MPMX19_05998 0.61 +2.2
153,204 - MPMX19_05998 0.79 -1.3
153,204 - MPMX19_05998 0.79 +0.2
153,204 - MPMX19_05998 0.79 +0.7
153,204 - MPMX19_05998 0.79 -1.1
153,215 + MPMX19_05998 0.79 -0.4
153,215 + MPMX19_05998 0.79 -0.1
153,215 + MPMX19_05998 0.79 +0.2
153,215 + MPMX19_05998 0.79 -0.4
153,215 + MPMX19_05998 0.79 -1.2
153,215 + MPMX19_05998 0.79 -1.3
153,216 - MPMX19_05998 0.79 -0.1
153,216 - MPMX19_05998 0.79 -0.4
153,216 - MPMX19_05998 0.79 +0.8
153,515 + +0.2
153,515 + +0.1
153,515 + -1.2
153,515 + -0.6
153,515 + +0.3
153,515 + -1.7
153,516 - -0.6
153,516 - -0.8
153,548 + +0.3
153,548 + -0.2
153,587 + +0.3
153,587 + -0.9
153,588 - +0.6
153,602 - -0.8
153,606 + -1.1
153,606 + +0.4
153,606 + -0.5
153,606 + -0.1
153,606 + -0.8
153,606 + -0.1
153,606 + -0.7
153,606 + +0.8
153,606 + -0.3
153,606 + -0.6
153,607 - -0.5
153,607 - +0.5
153,607 - +0.3
153,607 - -0.9
153,607 - -0.4
153,607 - -0.2
153,607 - +0.6
153,607 - -0.1
153,607 - +0.2
153,607 - -1.2
153,607 - +0.5
153,845 + MPMX19_05999 0.26 +0.6
153,845 + MPMX19_05999 0.26 +0.2
153,845 + MPMX19_05999 0.26 +0.8
153,845 + MPMX19_05999 0.26 +1.2
153,845 + MPMX19_05999 0.26 -0.5
153,846 - MPMX19_05999 0.27 +0.9
153,846 - MPMX19_05999 0.27 -0.4
153,846 - MPMX19_05999 0.27 -0.1
153,846 - MPMX19_05999 0.27 +0.3
153,846 - MPMX19_05999 0.27 +0.8
153,846 - MPMX19_05999 0.27 -0.8
153,846 - MPMX19_05999 0.27 -0.9
153,846 - MPMX19_05999 0.27 -0.1
153,860 + MPMX19_05999 0.30 +0.5
153,860 + MPMX19_05999 0.30 -0.2
153,860 + MPMX19_05999 0.30 -1.2
153,860 + MPMX19_05999 0.30 +0.5
153,861 - MPMX19_05999 0.30 -2.3
153,861 - MPMX19_05999 0.30 -1.7
153,861 - MPMX19_05999 0.30 +0.4
154,019 + MPMX19_05999 0.70 +0.3
154,019 + MPMX19_05999 0.70 -1.1
154,019 + MPMX19_05999 0.70 -1.5
154,019 + MPMX19_05999 0.70 -0.4
154,019 + MPMX19_05999 0.70 -0.2
154,019 + MPMX19_05999 0.70 -0.0
154,020 - MPMX19_05999 0.70 +0.4
154,020 - MPMX19_05999 0.70 -2.8
154,020 - MPMX19_05999 0.70 -0.3
154,020 - MPMX19_05999 0.70 -1.6
154,020 - MPMX19_05999 0.70 -0.2
154,020 - MPMX19_05999 0.70 -0.2
154,020 - MPMX19_05999 0.70 +0.4
154,020 - MPMX19_05999 0.70 -1.1
154,020 - MPMX19_05999 0.70 -0.2
154,078 + MPMX19_05999 0.85 -0.4
154,078 + MPMX19_05999 0.85 -0.6
154,078 + MPMX19_05999 0.85 -1.2
154,079 - MPMX19_05999 0.85 -0.5
154,079 - MPMX19_05999 0.85 +1.8
154,079 - MPMX19_05999 0.85 -0.4
154,079 - MPMX19_05999 0.85 -1.4
154,079 - MPMX19_05999 0.85 +0.2
154,288 + MPMX19_06000 0.14 -2.1
154,288 + MPMX19_06000 0.14 -0.0
154,288 + MPMX19_06000 0.14 +0.0
154,288 + MPMX19_06000 0.14 +0.1
154,288 + MPMX19_06000 0.14 -1.3
154,288 + MPMX19_06000 0.14 +0.4
154,289 - MPMX19_06000 0.14 -1.7
154,289 - MPMX19_06000 0.14 -0.5
154,549 + MPMX19_06000 0.41 +0.4
154,549 + MPMX19_06000 0.41 -0.7
154,549 + MPMX19_06000 0.41 +0.5
154,549 + MPMX19_06000 0.41 +0.6
154,550 - MPMX19_06000 0.41 -0.4
154,550 - MPMX19_06000 0.41 +0.2
154,550 - MPMX19_06000 0.41 -0.8
154,550 - MPMX19_06000 0.41 -1.2
154,550 - MPMX19_06000 0.41 -0.2
154,550 - MPMX19_06000 0.41 +0.6
154,550 - MPMX19_06000 0.41 +0.2
154,550 - MPMX19_06000 0.41 -0.4
154,550 - MPMX19_06000 0.41 -0.8

Or see this region's nucleotide sequence