Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05902

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05901 and MPMX19_05902 are separated by 6 nucleotidesMPMX19_05902 and MPMX19_05903 are separated by 105 nucleotides MPMX19_05901: MPMX19_05901 - Motility protein B, at 36,847 to 37,872 _05901 MPMX19_05902: MPMX19_05902 - Motility protein A, at 37,879 to 38,766 _05902 MPMX19_05903: MPMX19_05903 - hypothetical protein, at 38,872 to 41,355 _05903 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 37.040 kb on + strand, within MPMX19_05901at 37.040 kb on + strand, within MPMX19_05901at 37.058 kb on + strand, within MPMX19_05901at 37.682 kb on + strand, within MPMX19_05901at 37.682 kb on + strand, within MPMX19_05901at 37.683 kb on - strand, within MPMX19_05901at 37.683 kb on - strand, within MPMX19_05901at 37.683 kb on - strand, within MPMX19_05901at 37.776 kb on - strandat 37.776 kb on - strandat 37.776 kb on - strandat 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.970 kb on + strand, within MPMX19_05902at 37.971 kb on - strand, within MPMX19_05902at 37.971 kb on - strand, within MPMX19_05902at 37.971 kb on - strand, within MPMX19_05902at 37.971 kb on - strand, within MPMX19_05902at 37.971 kb on - strand, within MPMX19_05902at 37.971 kb on - strand, within MPMX19_05902at 37.988 kb on + strand, within MPMX19_05902at 37.988 kb on + strand, within MPMX19_05902at 37.988 kb on + strand, within MPMX19_05902at 37.988 kb on + strand, within MPMX19_05902at 37.988 kb on + strand, within MPMX19_05902at 37.989 kb on - strand, within MPMX19_05902at 37.989 kb on - strand, within MPMX19_05902at 37.989 kb on - strand, within MPMX19_05902at 37.989 kb on - strand, within MPMX19_05902at 38.025 kb on - strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.054 kb on + strand, within MPMX19_05902at 38.055 kb on + strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.055 kb on - strand, within MPMX19_05902at 38.117 kb on + strand, within MPMX19_05902at 38.117 kb on + strand, within MPMX19_05902at 38.118 kb on - strand, within MPMX19_05902at 38.381 kb on + strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.382 kb on - strand, within MPMX19_05902at 38.411 kb on + strand, within MPMX19_05902at 38.411 kb on + strand, within MPMX19_05902at 38.411 kb on + strand, within MPMX19_05902at 38.412 kb on - strand, within MPMX19_05902at 38.412 kb on - strand, within MPMX19_05902at 38.412 kb on - strand, within MPMX19_05902at 38.519 kb on + strand, within MPMX19_05902at 38.519 kb on + strand, within MPMX19_05902at 38.519 kb on + strand, within MPMX19_05902at 38.519 kb on + strand, within MPMX19_05902at 38.520 kb on - strand, within MPMX19_05902at 38.520 kb on - strand, within MPMX19_05902at 38.520 kb on - strand, within MPMX19_05902at 38.520 kb on - strand, within MPMX19_05902at 38.520 kb on - strand, within MPMX19_05902at 38.543 kb on + strand, within MPMX19_05902at 38.543 kb on + strand, within MPMX19_05902at 38.543 kb on + strand, within MPMX19_05902at 38.544 kb on - strand, within MPMX19_05902at 38.544 kb on - strand, within MPMX19_05902at 38.544 kb on - strand, within MPMX19_05902at 38.544 kb on - strand, within MPMX19_05902at 38.544 kb on - strand, within MPMX19_05902at 38.544 kb on - strand, within MPMX19_05902at 38.711 kb on + strandat 38.711 kb on + strandat 38.711 kb on + strandat 38.711 kb on + strandat 38.712 kb on - strandat 38.712 kb on - strandat 38.712 kb on - strandat 38.712 kb on - strandat 38.712 kb on - strandat 38.712 kb on - strandat 38.712 kb on - strandat 38.825 kb on + strandat 38.825 kb on + strandat 38.825 kb on + strandat 38.825 kb on + strandat 38.825 kb on + strandat 38.825 kb on + strandat 38.826 kb on - strandat 38.826 kb on - strandat 38.826 kb on - strandat 38.826 kb on - strandat 38.840 kb on - strandat 38.840 kb on - strandat 38.850 kb on + strandat 39.074 kb on + strandat 39.075 kb on - strandat 39.075 kb on - strandat 39.229 kb on + strand, within MPMX19_05903at 39.473 kb on + strand, within MPMX19_05903at 39.578 kb on + strand, within MPMX19_05903at 39.578 kb on + strand, within MPMX19_05903at 39.579 kb on - strand, within MPMX19_05903at 39.579 kb on - strand, within MPMX19_05903at 39.579 kb on - strand, within MPMX19_05903at 39.579 kb on - strand, within MPMX19_05903at 39.579 kb on - strand, within MPMX19_05903at 39.737 kb on + strand, within MPMX19_05903at 39.738 kb on - strand, within MPMX19_05903at 39.738 kb on - strand, within MPMX19_05903

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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37,040 + MPMX19_05901 0.19 +0.5
37,040 + MPMX19_05901 0.19 -0.2
37,058 + MPMX19_05901 0.21 -0.2
37,682 + MPMX19_05901 0.81 +0.8
37,682 + MPMX19_05901 0.81 -1.2
37,683 - MPMX19_05901 0.81 +1.4
37,683 - MPMX19_05901 0.81 -0.3
37,683 - MPMX19_05901 0.81 +0.2
37,776 - -0.1
37,776 - +1.2
37,776 - +0.2
37,970 + MPMX19_05902 0.10 -1.6
37,970 + MPMX19_05902 0.10 -1.2
37,970 + MPMX19_05902 0.10 -0.0
37,970 + MPMX19_05902 0.10 +0.2
37,970 + MPMX19_05902 0.10 +0.6
37,970 + MPMX19_05902 0.10 +0.8
37,970 + MPMX19_05902 0.10 -2.3
37,970 + MPMX19_05902 0.10 -0.3
37,970 + MPMX19_05902 0.10 +0.2
37,970 + MPMX19_05902 0.10 +0.4
37,971 - MPMX19_05902 0.10 +0.3
37,971 - MPMX19_05902 0.10 -1.9
37,971 - MPMX19_05902 0.10 -1.1
37,971 - MPMX19_05902 0.10 +0.0
37,971 - MPMX19_05902 0.10 +0.8
37,971 - MPMX19_05902 0.10 -0.8
37,988 + MPMX19_05902 0.12 -0.9
37,988 + MPMX19_05902 0.12 -1.5
37,988 + MPMX19_05902 0.12 -1.6
37,988 + MPMX19_05902 0.12 +0.2
37,988 + MPMX19_05902 0.12 +1.2
37,989 - MPMX19_05902 0.12 +0.5
37,989 - MPMX19_05902 0.12 +1.3
37,989 - MPMX19_05902 0.12 -0.7
37,989 - MPMX19_05902 0.12 -0.8
38,025 - MPMX19_05902 0.16 -0.1
38,054 + MPMX19_05902 0.20 -0.2
38,054 + MPMX19_05902 0.20 +1.3
38,054 + MPMX19_05902 0.20 +0.4
38,054 + MPMX19_05902 0.20 +0.2
38,054 + MPMX19_05902 0.20 -1.1
38,054 + MPMX19_05902 0.20 -1.4
38,054 + MPMX19_05902 0.20 +0.4
38,054 + MPMX19_05902 0.20 -1.1
38,054 + MPMX19_05902 0.20 -0.8
38,054 + MPMX19_05902 0.20 -1.5
38,054 + MPMX19_05902 0.20 +0.8
38,054 + MPMX19_05902 0.20 +0.2
38,054 + MPMX19_05902 0.20 -1.1
38,054 + MPMX19_05902 0.20 -0.1
38,054 + MPMX19_05902 0.20 +0.2
38,054 + MPMX19_05902 0.20 -0.1
38,054 + MPMX19_05902 0.20 -1.0
38,054 + MPMX19_05902 0.20 -1.1
38,054 + MPMX19_05902 0.20 +0.3
38,055 + MPMX19_05902 0.20 +1.8
38,055 - MPMX19_05902 0.20 -0.9
38,055 - MPMX19_05902 0.20 -1.1
38,055 - MPMX19_05902 0.20 -1.1
38,055 - MPMX19_05902 0.20 +0.6
38,055 - MPMX19_05902 0.20 -1.7
38,055 - MPMX19_05902 0.20 -0.8
38,055 - MPMX19_05902 0.20 -0.8
38,055 - MPMX19_05902 0.20 +1.1
38,055 - MPMX19_05902 0.20 +0.1
38,055 - MPMX19_05902 0.20 -1.1
38,055 - MPMX19_05902 0.20 -1.2
38,055 - MPMX19_05902 0.20 +0.6
38,055 - MPMX19_05902 0.20 -0.2
38,055 - MPMX19_05902 0.20 +0.2
38,055 - MPMX19_05902 0.20 -0.8
38,055 - MPMX19_05902 0.20 +1.4
38,055 - MPMX19_05902 0.20 -1.9
38,055 - MPMX19_05902 0.20 -0.5
38,055 - MPMX19_05902 0.20 -0.0
38,117 + MPMX19_05902 0.27 -0.6
38,117 + MPMX19_05902 0.27 +0.1
38,118 - MPMX19_05902 0.27 -1.8
38,381 + MPMX19_05902 0.57 -2.4
38,382 - MPMX19_05902 0.57 -1.1
38,382 - MPMX19_05902 0.57 +0.3
38,382 - MPMX19_05902 0.57 -2.1
38,382 - MPMX19_05902 0.57 -0.6
38,382 - MPMX19_05902 0.57 -0.6
38,382 - MPMX19_05902 0.57 +0.4
38,382 - MPMX19_05902 0.57 -0.6
38,382 - MPMX19_05902 0.57 -0.2
38,382 - MPMX19_05902 0.57 -1.1
38,411 + MPMX19_05902 0.60 -0.9
38,411 + MPMX19_05902 0.60 -1.3
38,411 + MPMX19_05902 0.60 -0.4
38,412 - MPMX19_05902 0.60 +0.0
38,412 - MPMX19_05902 0.60 -0.8
38,412 - MPMX19_05902 0.60 -1.1
38,519 + MPMX19_05902 0.72 +1.1
38,519 + MPMX19_05902 0.72 +0.2
38,519 + MPMX19_05902 0.72 +2.4
38,519 + MPMX19_05902 0.72 +0.2
38,520 - MPMX19_05902 0.72 -1.5
38,520 - MPMX19_05902 0.72 -0.2
38,520 - MPMX19_05902 0.72 -0.2
38,520 - MPMX19_05902 0.72 +0.9
38,520 - MPMX19_05902 0.72 +0.1
38,543 + MPMX19_05902 0.75 +0.1
38,543 + MPMX19_05902 0.75 -0.4
38,543 + MPMX19_05902 0.75 -0.1
38,544 - MPMX19_05902 0.75 +0.2
38,544 - MPMX19_05902 0.75 -0.2
38,544 - MPMX19_05902 0.75 -1.9
38,544 - MPMX19_05902 0.75 -0.6
38,544 - MPMX19_05902 0.75 -0.5
38,544 - MPMX19_05902 0.75 -0.8
38,711 + -0.9
38,711 + -0.5
38,711 + -0.1
38,711 + -0.2
38,712 - -1.1
38,712 - -0.2
38,712 - +0.0
38,712 - -0.9
38,712 - -0.2
38,712 - +0.8
38,712 - -0.5
38,825 + -1.6
38,825 + +0.0
38,825 + +0.3
38,825 + -0.3
38,825 + +1.0
38,825 + -2.2
38,826 - -0.3
38,826 - -0.1
38,826 - -0.2
38,826 - -1.4
38,840 - +0.8
38,840 - -0.9
38,850 + -1.2
39,074 + -0.7
39,075 - -0.7
39,075 - -1.8
39,229 + MPMX19_05903 0.14 +0.4
39,473 + MPMX19_05903 0.24 +1.1
39,578 + MPMX19_05903 0.28 +0.6
39,578 + MPMX19_05903 0.28 -2.2
39,579 - MPMX19_05903 0.28 -0.6
39,579 - MPMX19_05903 0.28 +0.2
39,579 - MPMX19_05903 0.28 -0.4
39,579 - MPMX19_05903 0.28 -0.6
39,579 - MPMX19_05903 0.28 -0.4
39,737 + MPMX19_05903 0.35 -0.9
39,738 - MPMX19_05903 0.35 +1.0
39,738 - MPMX19_05903 0.35 -2.1

Or see this region's nucleotide sequence