Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05826

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05824 and MPMX19_05825 are separated by 13 nucleotidesMPMX19_05825 and MPMX19_05826 are separated by 269 nucleotidesMPMX19_05826 and MPMX19_05827 are separated by 6 nucleotides MPMX19_05824: MPMX19_05824 - hypothetical protein, at 552,390 to 553,403 _05824 MPMX19_05825: MPMX19_05825 - hypothetical protein, at 553,417 to 554,061 _05825 MPMX19_05826: MPMX19_05826 - hypothetical protein, at 554,331 to 554,840 _05826 MPMX19_05827: MPMX19_05827 - hypothetical protein, at 554,847 to 556,628 _05827 Position (kb) 554 555Strain fitness (log2 ratio) -2 -1 0 1 2at 553.496 kb on + strand, within MPMX19_05825at 553.496 kb on + strand, within MPMX19_05825at 553.496 kb on + strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.742 kb on + strand, within MPMX19_05825at 553.742 kb on + strand, within MPMX19_05825at 553.742 kb on + strand, within MPMX19_05825at 553.743 kb on - strand, within MPMX19_05825at 553.743 kb on - strand, within MPMX19_05825at 554.078 kb on + strandat 554.079 kb on - strandat 554.079 kb on - strandat 554.104 kb on + strandat 554.104 kb on + strandat 554.104 kb on + strandat 554.104 kb on + strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.553 kb on + strand, within MPMX19_05826at 554.553 kb on + strand, within MPMX19_05826at 554.553 kb on + strand, within MPMX19_05826at 554.553 kb on + strand, within MPMX19_05826at 554.553 kb on + strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.998 kb on + strandat 554.998 kb on + strandat 554.998 kb on + strandat 554.999 kb on - strandat 554.999 kb on - strandat 554.999 kb on - strandat 554.999 kb on - strandat 555.259 kb on + strand, within MPMX19_05827at 555.259 kb on + strand, within MPMX19_05827at 555.259 kb on + strand, within MPMX19_05827at 555.260 kb on - strand, within MPMX19_05827at 555.260 kb on - strand, within MPMX19_05827at 555.260 kb on - strand, within MPMX19_05827at 555.260 kb on - strand, within MPMX19_05827at 555.292 kb on + strand, within MPMX19_05827at 555.292 kb on + strand, within MPMX19_05827at 555.292 kb on + strand, within MPMX19_05827at 555.292 kb on + strand, within MPMX19_05827at 555.292 kb on + strand, within MPMX19_05827at 555.292 kb on + strand, within MPMX19_05827at 555.292 kb on + strand, within MPMX19_05827at 555.293 kb on - strand, within MPMX19_05827at 555.293 kb on - strand, within MPMX19_05827at 555.293 kb on - strand, within MPMX19_05827at 555.293 kb on - strand, within MPMX19_05827at 555.293 kb on - strand, within MPMX19_05827at 555.293 kb on - strand, within MPMX19_05827at 555.520 kb on + strand, within MPMX19_05827at 555.520 kb on + strand, within MPMX19_05827at 555.521 kb on - strand, within MPMX19_05827at 555.521 kb on - strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.559 kb on + strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.560 kb on - strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.751 kb on + strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.752 kb on - strand, within MPMX19_05827at 555.826 kb on + strand, within MPMX19_05827at 555.826 kb on + strand, within MPMX19_05827at 555.826 kb on + strand, within MPMX19_05827at 555.827 kb on - strand, within MPMX19_05827at 555.827 kb on - strand, within MPMX19_05827at 555.827 kb on - strand, within MPMX19_05827at 555.827 kb on - strand, within MPMX19_05827at 555.827 kb on - strand, within MPMX19_05827

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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553,496 + MPMX19_05825 0.12 -0.8
553,496 + MPMX19_05825 0.12 -1.3
553,496 + MPMX19_05825 0.12 -1.0
553,497 - MPMX19_05825 0.12 +0.7
553,497 - MPMX19_05825 0.12 +1.7
553,497 - MPMX19_05825 0.12 +0.4
553,497 - MPMX19_05825 0.12 -0.4
553,497 - MPMX19_05825 0.12 -1.5
553,497 - MPMX19_05825 0.12 +0.3
553,742 + MPMX19_05825 0.50 -0.3
553,742 + MPMX19_05825 0.50 +0.4
553,742 + MPMX19_05825 0.50 +0.2
553,743 - MPMX19_05825 0.51 +0.9
553,743 - MPMX19_05825 0.51 -0.3
554,078 + +0.4
554,079 - -0.5
554,079 - +0.0
554,104 + -1.6
554,104 + -0.8
554,104 + -1.3
554,104 + +0.1
554,105 - -0.5
554,105 - +1.0
554,105 - -0.3
554,105 - -1.1
554,105 - -1.0
554,105 - -1.8
554,144 + -1.5
554,144 + +0.7
554,144 + -0.8
554,144 + +1.1
554,144 + -0.6
554,144 + -0.9
554,144 + -0.5
554,144 + +0.9
554,144 + -0.3
554,144 + +1.1
554,144 + +0.3
554,144 + +0.1
554,144 + -0.5
554,144 + -1.3
554,144 + -0.3
554,144 + +1.1
554,145 - -1.6
554,145 - -1.3
554,145 - -0.3
554,145 - -1.5
554,145 - +0.0
554,145 - -2.2
554,145 - -0.4
554,145 - +2.3
554,553 + MPMX19_05826 0.44 -1.0
554,553 + MPMX19_05826 0.44 +0.7
554,553 + MPMX19_05826 0.44 +2.7
554,553 + MPMX19_05826 0.44 +0.9
554,553 + MPMX19_05826 0.44 +0.4
554,554 - MPMX19_05826 0.44 -0.7
554,554 - MPMX19_05826 0.44 -0.5
554,554 - MPMX19_05826 0.44 +0.6
554,554 - MPMX19_05826 0.44 +0.5
554,554 - MPMX19_05826 0.44 -1.1
554,554 - MPMX19_05826 0.44 -0.4
554,998 + +0.4
554,998 + -0.3
554,998 + -0.1
554,999 - -0.9
554,999 - -1.2
554,999 - -0.9
554,999 - +0.8
555,259 + MPMX19_05827 0.23 +0.7
555,259 + MPMX19_05827 0.23 +0.1
555,259 + MPMX19_05827 0.23 +0.1
555,260 - MPMX19_05827 0.23 +0.0
555,260 - MPMX19_05827 0.23 -0.1
555,260 - MPMX19_05827 0.23 -1.5
555,260 - MPMX19_05827 0.23 +0.4
555,292 + MPMX19_05827 0.25 -1.5
555,292 + MPMX19_05827 0.25 +0.1
555,292 + MPMX19_05827 0.25 +0.7
555,292 + MPMX19_05827 0.25 -1.5
555,292 + MPMX19_05827 0.25 -1.1
555,292 + MPMX19_05827 0.25 -0.5
555,292 + MPMX19_05827 0.25 -0.5
555,293 - MPMX19_05827 0.25 -1.6
555,293 - MPMX19_05827 0.25 +0.1
555,293 - MPMX19_05827 0.25 +1.2
555,293 - MPMX19_05827 0.25 -0.1
555,293 - MPMX19_05827 0.25 +0.9
555,293 - MPMX19_05827 0.25 -0.9
555,520 + MPMX19_05827 0.38 -0.5
555,520 + MPMX19_05827 0.38 -1.0
555,521 - MPMX19_05827 0.38 -0.1
555,521 - MPMX19_05827 0.38 -0.0
555,559 + MPMX19_05827 0.40 +0.1
555,559 + MPMX19_05827 0.40 -0.9
555,559 + MPMX19_05827 0.40 +0.3
555,559 + MPMX19_05827 0.40 -0.9
555,559 + MPMX19_05827 0.40 -0.6
555,559 + MPMX19_05827 0.40 -0.1
555,559 + MPMX19_05827 0.40 -0.7
555,559 + MPMX19_05827 0.40 -1.8
555,559 + MPMX19_05827 0.40 -0.3
555,559 + MPMX19_05827 0.40 -0.2
555,559 + MPMX19_05827 0.40 +0.1
555,559 + MPMX19_05827 0.40 -1.6
555,559 + MPMX19_05827 0.40 -0.1
555,559 + MPMX19_05827 0.40 -0.6
555,560 - MPMX19_05827 0.40 -0.8
555,560 - MPMX19_05827 0.40 -0.9
555,560 - MPMX19_05827 0.40 -0.5
555,560 - MPMX19_05827 0.40 -1.0
555,560 - MPMX19_05827 0.40 -1.6
555,560 - MPMX19_05827 0.40 -1.2
555,560 - MPMX19_05827 0.40 -0.9
555,560 - MPMX19_05827 0.40 -0.1
555,560 - MPMX19_05827 0.40 -0.1
555,560 - MPMX19_05827 0.40 -0.9
555,560 - MPMX19_05827 0.40 -0.1
555,560 - MPMX19_05827 0.40 -0.0
555,560 - MPMX19_05827 0.40 -1.6
555,560 - MPMX19_05827 0.40 -1.2
555,751 + MPMX19_05827 0.51 +0.6
555,751 + MPMX19_05827 0.51 +1.1
555,751 + MPMX19_05827 0.51 -0.5
555,751 + MPMX19_05827 0.51 +1.1
555,751 + MPMX19_05827 0.51 +0.0
555,751 + MPMX19_05827 0.51 -0.9
555,751 + MPMX19_05827 0.51 +0.1
555,751 + MPMX19_05827 0.51 -1.9
555,751 + MPMX19_05827 0.51 -2.1
555,751 + MPMX19_05827 0.51 +1.0
555,751 + MPMX19_05827 0.51 -1.4
555,751 + MPMX19_05827 0.51 -2.0
555,751 + MPMX19_05827 0.51 +1.4
555,751 + MPMX19_05827 0.51 -0.9
555,751 + MPMX19_05827 0.51 -0.9
555,752 - MPMX19_05827 0.51 -1.2
555,752 - MPMX19_05827 0.51 -2.0
555,752 - MPMX19_05827 0.51 +0.3
555,752 - MPMX19_05827 0.51 -1.6
555,752 - MPMX19_05827 0.51 +0.3
555,752 - MPMX19_05827 0.51 -1.3
555,752 - MPMX19_05827 0.51 -1.0
555,752 - MPMX19_05827 0.51 +1.0
555,752 - MPMX19_05827 0.51 +0.5
555,752 - MPMX19_05827 0.51 -0.3
555,752 - MPMX19_05827 0.51 +0.0
555,826 + MPMX19_05827 0.55 -0.0
555,826 + MPMX19_05827 0.55 -1.0
555,826 + MPMX19_05827 0.55 -2.0
555,827 - MPMX19_05827 0.55 -1.0
555,827 - MPMX19_05827 0.55 -0.4
555,827 - MPMX19_05827 0.55 -0.8
555,827 - MPMX19_05827 0.55 -0.5
555,827 - MPMX19_05827 0.55 -0.5

Or see this region's nucleotide sequence