Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05823

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05822 and MPMX19_05823 are separated by 34 nucleotidesMPMX19_05823 and MPMX19_05824 are separated by 155 nucleotides MPMX19_05822: MPMX19_05822 - Sensor histidine kinase RcsC, at 549,102 to 551,894 _05822 MPMX19_05823: MPMX19_05823 - hypothetical protein, at 551,929 to 552,234 _05823 MPMX19_05824: MPMX19_05824 - hypothetical protein, at 552,390 to 553,403 _05824 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1at 551.820 kb on + strandat 551.820 kb on + strandat 551.820 kb on + strandat 551.821 kb on - strandat 551.821 kb on - strandat 551.821 kb on - strandat 551.821 kb on - strandat 551.821 kb on - strandat 551.907 kb on + strandat 551.908 kb on - strandat 552.114 kb on - strand, within MPMX19_05823at 552.114 kb on - strand, within MPMX19_05823at 552.152 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.197 kb on + strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.198 kb on - strand, within MPMX19_05823at 552.316 kb on - strandat 552.316 kb on - strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.422 kb on - strandat 552.422 kb on - strandat 552.422 kb on - strandat 552.422 kb on - strandat 552.637 kb on + strand, within MPMX19_05824at 552.638 kb on - strand, within MPMX19_05824at 552.844 kb on + strand, within MPMX19_05824at 552.844 kb on + strand, within MPMX19_05824at 552.844 kb on + strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 553.099 kb on + strand, within MPMX19_05824at 553.099 kb on + strand, within MPMX19_05824at 553.099 kb on + strand, within MPMX19_05824at 553.099 kb on + strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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551,820 + -0.8
551,820 + -0.7
551,820 + +0.9
551,821 - +0.3
551,821 - -0.6
551,821 - +0.7
551,821 - +0.1
551,821 - -1.4
551,907 + -0.7
551,908 - -0.5
552,114 - MPMX19_05823 0.60 +0.3
552,114 - MPMX19_05823 0.60 +0.5
552,152 + MPMX19_05823 0.73 +0.2
552,197 + MPMX19_05823 0.88 -0.6
552,197 + MPMX19_05823 0.88 -0.2
552,197 + MPMX19_05823 0.88 +0.1
552,197 + MPMX19_05823 0.88 +1.1
552,197 + MPMX19_05823 0.88 -0.5
552,197 + MPMX19_05823 0.88 -0.6
552,197 + MPMX19_05823 0.88 -0.3
552,197 + MPMX19_05823 0.88 +0.0
552,197 + MPMX19_05823 0.88 -0.5
552,197 + MPMX19_05823 0.88 -0.1
552,197 + MPMX19_05823 0.88 -0.1
552,197 + MPMX19_05823 0.88 -0.1
552,197 + MPMX19_05823 0.88 +0.8
552,198 - MPMX19_05823 0.88 -0.4
552,198 - MPMX19_05823 0.88 -1.9
552,198 - MPMX19_05823 0.88 -0.1
552,198 - MPMX19_05823 0.88 -1.0
552,198 - MPMX19_05823 0.88 -0.6
552,198 - MPMX19_05823 0.88 +0.5
552,198 - MPMX19_05823 0.88 +0.1
552,198 - MPMX19_05823 0.88 -0.2
552,198 - MPMX19_05823 0.88 +1.5
552,198 - MPMX19_05823 0.88 +0.6
552,198 - MPMX19_05823 0.88 -0.3
552,198 - MPMX19_05823 0.88 -0.4
552,316 - +1.1
552,316 - +0.1
552,421 + -0.1
552,421 + -2.1
552,421 + +0.9
552,421 + +0.9
552,421 + +0.1
552,421 + +1.0
552,421 + -0.5
552,422 - -1.0
552,422 - -1.3
552,422 - +0.1
552,422 - -0.6
552,637 + MPMX19_05824 0.24 +0.5
552,638 - MPMX19_05824 0.24 -0.6
552,844 + MPMX19_05824 0.45 -0.8
552,844 + MPMX19_05824 0.45 -0.1
552,844 + MPMX19_05824 0.45 -0.9
552,845 - MPMX19_05824 0.45 -1.1
552,845 - MPMX19_05824 0.45 -0.3
552,845 - MPMX19_05824 0.45 +0.7
552,845 - MPMX19_05824 0.45 -0.6
552,845 - MPMX19_05824 0.45 +0.0
552,845 - MPMX19_05824 0.45 +1.2
552,845 - MPMX19_05824 0.45 -0.3
552,845 - MPMX19_05824 0.45 -1.1
553,099 + MPMX19_05824 0.70 -0.5
553,099 + MPMX19_05824 0.70 +0.8
553,099 + MPMX19_05824 0.70 -0.6
553,099 + MPMX19_05824 0.70 +0.2
553,100 - MPMX19_05824 0.70 +1.3
553,100 - MPMX19_05824 0.70 -1.3
553,100 - MPMX19_05824 0.70 -1.4
553,100 - MPMX19_05824 0.70 -0.3
553,100 - MPMX19_05824 0.70 +0.1
553,100 - MPMX19_05824 0.70 -0.6

Or see this region's nucleotide sequence