Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05784 and MPMX19_05785 are separated by 78 nucleotides MPMX19_05785 and MPMX19_05786 are separated by 154 nucleotides MPMX19_05786 and MPMX19_05787 are separated by 15 nucleotides
MPMX19_05784: MPMX19_05784 - hypothetical protein, at 507,144 to 508,259
_05784
MPMX19_05785: MPMX19_05785 - hypothetical protein, at 508,338 to 509,354
_05785
MPMX19_05786: MPMX19_05786 - HTH-type transcriptional repressor RspR, at 509,509 to 510,267
_05786
MPMX19_05787: MPMX19_05787 - Methylglyoxal synthase, at 510,283 to 510,750
_05787
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 507.372 kb on + strand, within MPMX19_05784 at 507.373 kb on - strand, within MPMX19_05784 at 507.373 kb on - strand, within MPMX19_05784 at 507.373 kb on - strand, within MPMX19_05784 at 507.373 kb on - strand, within MPMX19_05784 at 507.373 kb on - strand, within MPMX19_05784 at 507.438 kb on + strand, within MPMX19_05784 at 507.438 kb on + strand, within MPMX19_05784 at 507.438 kb on + strand, within MPMX19_05784 at 507.438 kb on + strand, within MPMX19_05784 at 507.438 kb on + strand, within MPMX19_05784 at 507.438 kb on + strand, within MPMX19_05784 at 507.439 kb on - strand, within MPMX19_05784 at 507.439 kb on - strand, within MPMX19_05784 at 507.439 kb on - strand, within MPMX19_05784 at 507.439 kb on - strand, within MPMX19_05784 at 507.439 kb on - strand, within MPMX19_05784 at 507.439 kb on - strand, within MPMX19_05784 at 507.439 kb on - strand, within MPMX19_05784 at 507.957 kb on + strand, within MPMX19_05784 at 507.957 kb on + strand, within MPMX19_05784 at 507.957 kb on + strand, within MPMX19_05784 at 507.957 kb on + strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.958 kb on - strand, within MPMX19_05784 at 507.959 kb on - strand, within MPMX19_05784 at 507.969 kb on + strand, within MPMX19_05784 at 507.969 kb on + strand, within MPMX19_05784 at 508.194 kb on + strand at 508.194 kb on + strand at 508.194 kb on + strand at 508.194 kb on + strand at 508.195 kb on - strand at 508.195 kb on - strand at 508.195 kb on - strand at 508.195 kb on - strand at 508.195 kb on - strand at 508.195 kb on - strand at 508.195 kb on - strand at 508.260 kb on + strand at 508.260 kb on + strand at 508.474 kb on - strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.476 kb on + strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.477 kb on - strand, within MPMX19_05785 at 508.500 kb on + strand, within MPMX19_05785 at 508.500 kb on + strand, within MPMX19_05785 at 508.500 kb on + strand, within MPMX19_05785 at 508.500 kb on + strand, within MPMX19_05785 at 508.500 kb on + strand, within MPMX19_05785 at 508.500 kb on + strand, within MPMX19_05785 at 508.500 kb on + strand, within MPMX19_05785 at 508.500 kb on + strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.501 kb on - strand, within MPMX19_05785 at 508.768 kb on - strand, within MPMX19_05785 at 508.800 kb on + strand, within MPMX19_05785 at 508.800 kb on + strand, within MPMX19_05785 at 508.801 kb on - strand, within MPMX19_05785 at 508.801 kb on - strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.902 kb on + strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.903 kb on - strand, within MPMX19_05785 at 508.912 kb on - strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.965 kb on + strand, within MPMX19_05785 at 508.966 kb on - strand, within MPMX19_05785 at 508.966 kb on - strand, within MPMX19_05785 at 508.966 kb on - strand, within MPMX19_05785 at 509.004 kb on + strand, within MPMX19_05785 at 509.004 kb on + strand, within MPMX19_05785 at 509.004 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.005 kb on - strand, within MPMX19_05785 at 509.088 kb on + strand, within MPMX19_05785 at 509.089 kb on - strand, within MPMX19_05785 at 509.089 kb on - strand, within MPMX19_05785 at 509.316 kb on + strand at 509.316 kb on + strand at 509.317 kb on - strand at 509.317 kb on - strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.452 kb on + strand at 509.452 kb on + strand at 509.453 kb on - strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.460 kb on + strand at 509.461 kb on - strand at 509.461 kb on - strand at 509.477 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.529 kb on + strand at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.881 kb on + strand, within MPMX19_05786 at 510.244 kb on + strand at 510.245 kb on - strand at 510.245 kb on - strand at 510.253 kb on + strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.302 kb on + strand at 510.303 kb on - strand at 510.303 kb on - strand at 510.332 kb on + strand, within MPMX19_05787 at 510.333 kb on - strand, within MPMX19_05787
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 507,372 + MPMX19_05784 0.20 -0.2 507,373 - MPMX19_05784 0.21 -0.6 507,373 - MPMX19_05784 0.21 -0.4 507,373 - MPMX19_05784 0.21 -1.6 507,373 - MPMX19_05784 0.21 -0.6 507,373 - MPMX19_05784 0.21 +0.5 507,438 + MPMX19_05784 0.26 -0.5 507,438 + MPMX19_05784 0.26 +0.0 507,438 + MPMX19_05784 0.26 -1.1 507,438 + MPMX19_05784 0.26 -0.6 507,438 + MPMX19_05784 0.26 -0.6 507,438 + MPMX19_05784 0.26 -0.4 507,439 - MPMX19_05784 0.26 -0.5 507,439 - MPMX19_05784 0.26 +0.1 507,439 - MPMX19_05784 0.26 -0.6 507,439 - MPMX19_05784 0.26 +0.4 507,439 - MPMX19_05784 0.26 -0.8 507,439 - MPMX19_05784 0.26 -1.5 507,439 - MPMX19_05784 0.26 +0.2 507,957 + MPMX19_05784 0.73 -1.9 507,957 + MPMX19_05784 0.73 +3.7 507,957 + MPMX19_05784 0.73 -1.1 507,957 + MPMX19_05784 0.73 -0.4 507,958 - MPMX19_05784 0.73 -0.3 507,958 - MPMX19_05784 0.73 -2.0 507,958 - MPMX19_05784 0.73 -1.3 507,958 - MPMX19_05784 0.73 -0.4 507,958 - MPMX19_05784 0.73 -0.5 507,958 - MPMX19_05784 0.73 -1.0 507,958 - MPMX19_05784 0.73 -0.4 507,958 - MPMX19_05784 0.73 -0.7 507,958 - MPMX19_05784 0.73 -0.7 507,959 - MPMX19_05784 0.73 +0.3 507,969 + MPMX19_05784 0.74 -0.6 507,969 + MPMX19_05784 0.74 +0.2 508,194 + -0.6 508,194 + -0.3 508,194 + -1.0 508,194 + +0.9 508,195 - +1.2 508,195 - -0.4 508,195 - -0.3 508,195 - -0.5 508,195 - -0.4 508,195 - +0.6 508,195 - -1.5 508,260 + -0.0 508,260 + +0.0 508,474 - MPMX19_05785 0.13 -0.2 508,476 + MPMX19_05785 0.14 -1.3 508,476 + MPMX19_05785 0.14 -0.2 508,476 + MPMX19_05785 0.14 -0.8 508,476 + MPMX19_05785 0.14 -0.4 508,476 + MPMX19_05785 0.14 -1.1 508,476 + MPMX19_05785 0.14 -0.1 508,476 + MPMX19_05785 0.14 +0.7 508,476 + MPMX19_05785 0.14 -0.2 508,476 + MPMX19_05785 0.14 +0.9 508,476 + MPMX19_05785 0.14 +0.7 508,476 + MPMX19_05785 0.14 -1.1 508,477 - MPMX19_05785 0.14 -0.0 508,477 - MPMX19_05785 0.14 +0.1 508,477 - MPMX19_05785 0.14 +0.0 508,477 - MPMX19_05785 0.14 -0.0 508,477 - MPMX19_05785 0.14 +0.2 508,477 - MPMX19_05785 0.14 -0.3 508,477 - MPMX19_05785 0.14 +0.9 508,477 - MPMX19_05785 0.14 -1.5 508,477 - MPMX19_05785 0.14 +0.8 508,477 - MPMX19_05785 0.14 -0.0 508,477 - MPMX19_05785 0.14 +0.3 508,477 - MPMX19_05785 0.14 -0.5 508,477 - MPMX19_05785 0.14 -0.4 508,500 + MPMX19_05785 0.16 -0.2 508,500 + MPMX19_05785 0.16 -0.8 508,500 + MPMX19_05785 0.16 -0.9 508,500 + MPMX19_05785 0.16 +0.4 508,500 + MPMX19_05785 0.16 -0.2 508,500 + MPMX19_05785 0.16 +0.1 508,500 + MPMX19_05785 0.16 +0.1 508,500 + MPMX19_05785 0.16 -0.1 508,501 - MPMX19_05785 0.16 -0.7 508,501 - MPMX19_05785 0.16 -2.5 508,501 - MPMX19_05785 0.16 +0.4 508,501 - MPMX19_05785 0.16 -0.2 508,501 - MPMX19_05785 0.16 -0.8 508,501 - MPMX19_05785 0.16 -1.8 508,501 - MPMX19_05785 0.16 -0.9 508,501 - MPMX19_05785 0.16 +0.1 508,501 - MPMX19_05785 0.16 -0.1 508,768 - MPMX19_05785 0.42 -0.6 508,800 + MPMX19_05785 0.45 -0.8 508,800 + MPMX19_05785 0.45 -0.6 508,801 - MPMX19_05785 0.46 -1.6 508,801 - MPMX19_05785 0.46 -0.4 508,902 + MPMX19_05785 0.55 -0.6 508,902 + MPMX19_05785 0.55 -0.7 508,902 + MPMX19_05785 0.55 +0.1 508,902 + MPMX19_05785 0.55 -1.6 508,902 + MPMX19_05785 0.55 +0.1 508,902 + MPMX19_05785 0.55 -0.4 508,902 + MPMX19_05785 0.55 -0.9 508,902 + MPMX19_05785 0.55 -0.5 508,902 + MPMX19_05785 0.55 +1.1 508,903 - MPMX19_05785 0.56 -0.8 508,903 - MPMX19_05785 0.56 -0.2 508,903 - MPMX19_05785 0.56 +0.7 508,903 - MPMX19_05785 0.56 -0.1 508,903 - MPMX19_05785 0.56 -1.1 508,903 - MPMX19_05785 0.56 -0.5 508,903 - MPMX19_05785 0.56 +0.0 508,903 - MPMX19_05785 0.56 -0.8 508,903 - MPMX19_05785 0.56 +0.4 508,903 - MPMX19_05785 0.56 +0.7 508,903 - MPMX19_05785 0.56 -1.1 508,903 - MPMX19_05785 0.56 -1.3 508,903 - MPMX19_05785 0.56 +0.2 508,912 - MPMX19_05785 0.56 +0.1 508,965 + MPMX19_05785 0.62 -1.6 508,965 + MPMX19_05785 0.62 +0.7 508,965 + MPMX19_05785 0.62 +1.7 508,965 + MPMX19_05785 0.62 -0.1 508,965 + MPMX19_05785 0.62 -0.1 508,966 - MPMX19_05785 0.62 +1.1 508,966 - MPMX19_05785 0.62 +0.3 508,966 - MPMX19_05785 0.62 -0.3 509,004 + MPMX19_05785 0.65 -1.5 509,004 + MPMX19_05785 0.65 -0.4 509,004 - MPMX19_05785 0.65 +0.2 509,005 - MPMX19_05785 0.66 +0.2 509,005 - MPMX19_05785 0.66 +0.4 509,005 - MPMX19_05785 0.66 +0.4 509,005 - MPMX19_05785 0.66 -1.0 509,005 - MPMX19_05785 0.66 +0.2 509,088 + MPMX19_05785 0.74 -0.1 509,089 - MPMX19_05785 0.74 +0.3 509,089 - MPMX19_05785 0.74 -1.1 509,316 + -0.2 509,316 + +0.8 509,317 - -0.3 509,317 - +0.8 509,352 + -0.2 509,352 + +0.9 509,352 + -0.3 509,352 + -0.2 509,352 + -1.0 509,352 + -0.3 509,352 + +1.0 509,353 - -1.1 509,353 - -1.6 509,353 - +0.7 509,353 - -1.2 509,353 - -0.2 509,353 - -0.1 509,452 + +0.1 509,452 + +0.1 509,453 - +0.1 509,454 + -0.6 509,454 + -0.9 509,454 + +0.1 509,454 + -0.8 509,454 + +0.2 509,454 + -0.7 509,454 + +0.0 509,454 + -0.3 509,454 + -1.2 509,455 - -1.6 509,455 - +0.3 509,455 - -0.1 509,455 - +0.8 509,457 + -0.5 509,457 + -0.0 509,457 + -1.5 509,457 + -0.9 509,458 - -0.3 509,458 - -1.1 509,458 - +0.9 509,458 - +1.9 509,458 - +1.2 509,460 + -0.6 509,461 - -0.2 509,461 - -1.0 509,477 + -0.9 509,508 + -0.0 509,508 + -0.5 509,508 + +1.4 509,508 + -0.1 509,508 + -0.1 509,509 - +0.1 509,509 - +0.6 509,509 - +0.5 509,509 - -2.9 509,509 - -2.0 509,529 + -1.8 509,635 + MPMX19_05786 0.17 -0.4 509,635 + MPMX19_05786 0.17 -1.0 509,635 + MPMX19_05786 0.17 -1.6 509,635 + MPMX19_05786 0.17 -0.6 509,635 + MPMX19_05786 0.17 -0.8 509,636 - MPMX19_05786 0.17 -0.1 509,636 - MPMX19_05786 0.17 +1.3 509,636 - MPMX19_05786 0.17 +0.2 509,636 - MPMX19_05786 0.17 +0.3 509,636 - MPMX19_05786 0.17 +0.2 509,636 - MPMX19_05786 0.17 -0.9 509,717 - MPMX19_05786 0.27 +0.4 509,717 - MPMX19_05786 0.27 +1.1 509,717 - MPMX19_05786 0.27 -0.1 509,717 - MPMX19_05786 0.27 +0.1 509,717 - MPMX19_05786 0.27 +0.7 509,717 - MPMX19_05786 0.27 -1.0 509,717 - MPMX19_05786 0.27 -0.5 509,881 + MPMX19_05786 0.49 -1.1 510,244 + +0.2 510,245 - -0.1 510,245 - -0.4 510,253 + -0.4 510,254 - +0.3 510,254 - -0.6 510,254 - -0.3 510,254 - -0.3 510,302 + +1.2 510,303 - -0.1 510,303 - +1.1 510,332 + MPMX19_05787 0.10 -0.8 510,333 - MPMX19_05787 0.11 +0.5
Or see this region's nucleotide sequence