Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05777 and MPMX19_05778 overlap by 8 nucleotides MPMX19_05778 and MPMX19_05779 overlap by 8 nucleotides MPMX19_05779 and MPMX19_05780 are separated by 74 nucleotides
MPMX19_05777: MPMX19_05777 - 3-hydroxyadipyl-CoA dehydrogenase, at 499,761 to 501,278
_05777
MPMX19_05778: MPMX19_05778 - Acyl-coenzyme A thioesterase PaaI, at 501,271 to 501,729
_05778
MPMX19_05779: MPMX19_05779 - Beta-ketoadipyl-CoA thiolase, at 501,722 to 502,930
_05779
MPMX19_05780: MPMX19_05780 - Phenylacetate-coenzyme A ligase, at 503,005 to 504,330
_05780
Position (kb)
501
502
503 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 500.795 kb on + strand, within MPMX19_05777 at 500.886 kb on + strand, within MPMX19_05777 at 500.886 kb on + strand, within MPMX19_05777 at 500.887 kb on - strand, within MPMX19_05777 at 500.887 kb on - strand, within MPMX19_05777 at 500.887 kb on - strand, within MPMX19_05777 at 501.123 kb on + strand, within MPMX19_05777 at 501.124 kb on - strand, within MPMX19_05777 at 501.124 kb on - strand, within MPMX19_05777 at 501.204 kb on + strand at 501.204 kb on + strand at 501.204 kb on + strand at 501.204 kb on + strand at 501.204 kb on + strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.488 kb on - strand, within MPMX19_05778 at 501.488 kb on - strand, within MPMX19_05778 at 501.488 kb on - strand, within MPMX19_05778 at 501.488 kb on - strand, within MPMX19_05778 at 501.556 kb on - strand, within MPMX19_05778 at 501.619 kb on + strand, within MPMX19_05778 at 501.619 kb on + strand, within MPMX19_05778 at 501.619 kb on + strand, within MPMX19_05778 at 501.619 kb on + strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.734 kb on + strand at 501.734 kb on + strand at 501.734 kb on + strand at 501.734 kb on + strand at 501.734 kb on + strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 502.378 kb on - strand, within MPMX19_05779 at 502.378 kb on - strand, within MPMX19_05779 at 502.378 kb on - strand, within MPMX19_05779 at 502.378 kb on - strand, within MPMX19_05779 at 502.654 kb on - strand, within MPMX19_05779 at 502.654 kb on - strand, within MPMX19_05779 at 502.654 kb on - strand, within MPMX19_05779 at 502.936 kb on + strand at 503.062 kb on + strand at 503.134 kb on + strand at 503.134 kb on + strand at 503.134 kb on + strand at 503.134 kb on + strand at 503.135 kb on - strand at 503.135 kb on - strand at 503.135 kb on - strand at 503.257 kb on + strand, within MPMX19_05780 at 503.347 kb on + strand, within MPMX19_05780 at 503.440 kb on + strand, within MPMX19_05780 at 503.441 kb on - strand, within MPMX19_05780 at 503.479 kb on + strand, within MPMX19_05780 at 503.479 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.593 kb on + strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.594 kb on - strand, within MPMX19_05780 at 503.743 kb on + strand, within MPMX19_05780 at 503.743 kb on + strand, within MPMX19_05780 at 503.743 kb on + strand, within MPMX19_05780 at 503.743 kb on + strand, within MPMX19_05780 at 503.743 kb on + strand, within MPMX19_05780 at 503.743 kb on + strand, within MPMX19_05780 at 503.743 kb on + strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.744 kb on - strand, within MPMX19_05780 at 503.830 kb on + strand, within MPMX19_05780 at 503.830 kb on + strand, within MPMX19_05780 at 503.830 kb on + strand, within MPMX19_05780 at 503.830 kb on + strand, within MPMX19_05780 at 503.831 kb on - strand, within MPMX19_05780 at 503.881 kb on + strand, within MPMX19_05780 at 503.881 kb on + strand, within MPMX19_05780 at 503.881 kb on + strand, within MPMX19_05780 at 503.882 kb on - strand, within MPMX19_05780 at 503.882 kb on - strand, within MPMX19_05780
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 500,795 + MPMX19_05777 0.68 -0.2 500,886 + MPMX19_05777 0.74 +0.7 500,886 + MPMX19_05777 0.74 +0.3 500,887 - MPMX19_05777 0.74 -0.9 500,887 - MPMX19_05777 0.74 -1.3 500,887 - MPMX19_05777 0.74 -1.5 501,123 + MPMX19_05777 0.90 -1.6 501,124 - MPMX19_05777 0.90 -1.8 501,124 - MPMX19_05777 0.90 -0.5 501,204 + -2.0 501,204 + +0.1 501,204 + -1.1 501,204 + -0.4 501,204 + +0.6 501,205 - +1.2 501,205 - +0.5 501,205 - -0.3 501,205 - +0.6 501,328 + MPMX19_05778 0.12 +0.7 501,328 + MPMX19_05778 0.12 -0.5 501,328 + MPMX19_05778 0.12 -1.9 501,328 + MPMX19_05778 0.12 +0.5 501,328 + MPMX19_05778 0.12 +2.1 501,328 + MPMX19_05778 0.12 -1.9 501,328 + MPMX19_05778 0.12 +0.7 501,328 + MPMX19_05778 0.12 -0.5 501,328 + MPMX19_05778 0.12 -1.7 501,329 - MPMX19_05778 0.13 -1.1 501,329 - MPMX19_05778 0.13 -0.3 501,329 - MPMX19_05778 0.13 +0.4 501,329 - MPMX19_05778 0.13 -1.0 501,329 - MPMX19_05778 0.13 -0.3 501,329 - MPMX19_05778 0.13 -0.8 501,329 - MPMX19_05778 0.13 -0.6 501,329 - MPMX19_05778 0.13 -0.9 501,329 - MPMX19_05778 0.13 -0.4 501,329 - MPMX19_05778 0.13 +0.1 501,329 - MPMX19_05778 0.13 -0.3 501,329 - MPMX19_05778 0.13 +0.0 501,329 - MPMX19_05778 0.13 -0.1 501,329 - MPMX19_05778 0.13 +0.3 501,329 - MPMX19_05778 0.13 +0.3 501,329 - MPMX19_05778 0.13 +1.7 501,329 - MPMX19_05778 0.13 -0.1 501,329 - MPMX19_05778 0.13 -2.0 501,329 - MPMX19_05778 0.13 +0.3 501,329 - MPMX19_05778 0.13 -1.5 501,329 - MPMX19_05778 0.13 -1.1 501,329 - MPMX19_05778 0.13 -0.4 501,329 - MPMX19_05778 0.13 -0.1 501,329 - MPMX19_05778 0.13 +0.4 501,487 + MPMX19_05778 0.47 +0.1 501,487 + MPMX19_05778 0.47 +0.8 501,487 + MPMX19_05778 0.47 -0.0 501,487 + MPMX19_05778 0.47 -1.4 501,487 + MPMX19_05778 0.47 -2.3 501,488 - MPMX19_05778 0.47 +0.4 501,488 - MPMX19_05778 0.47 +0.5 501,488 - MPMX19_05778 0.47 -0.3 501,488 - MPMX19_05778 0.47 -1.2 501,556 - MPMX19_05778 0.62 -2.1 501,619 + MPMX19_05778 0.76 -2.6 501,619 + MPMX19_05778 0.76 -0.6 501,619 + MPMX19_05778 0.76 -0.9 501,619 + MPMX19_05778 0.76 +0.7 501,620 - MPMX19_05778 0.76 -0.8 501,620 - MPMX19_05778 0.76 -0.0 501,620 - MPMX19_05778 0.76 -0.7 501,620 - MPMX19_05778 0.76 +0.3 501,620 - MPMX19_05778 0.76 -1.3 501,734 + -1.0 501,734 + +0.2 501,734 + +0.1 501,734 + -0.6 501,734 + +0.1 501,735 - -1.0 501,735 - +0.0 501,735 - +0.7 501,735 - -0.6 501,735 - -0.4 501,735 - -0.3 501,735 - +0.3 501,735 - -0.3 501,735 - +0.5 501,735 - +0.8 501,735 - -1.1 502,378 - MPMX19_05779 0.54 -0.5 502,378 - MPMX19_05779 0.54 -0.1 502,378 - MPMX19_05779 0.54 +0.1 502,378 - MPMX19_05779 0.54 +0.2 502,654 - MPMX19_05779 0.77 +0.1 502,654 - MPMX19_05779 0.77 +0.5 502,654 - MPMX19_05779 0.77 -0.3 502,936 + +0.8 503,062 + -1.3 503,134 + -0.1 503,134 + -0.1 503,134 + -0.7 503,134 + +2.2 503,135 - -1.1 503,135 - +0.7 503,135 - -0.6 503,257 + MPMX19_05780 0.19 +0.6 503,347 + MPMX19_05780 0.26 -0.0 503,440 + MPMX19_05780 0.33 +0.4 503,441 - MPMX19_05780 0.33 -1.7 503,479 + MPMX19_05780 0.36 +0.2 503,479 + MPMX19_05780 0.36 +0.9 503,593 + MPMX19_05780 0.44 +0.2 503,593 + MPMX19_05780 0.44 +0.1 503,593 + MPMX19_05780 0.44 -0.3 503,593 + MPMX19_05780 0.44 -1.0 503,593 + MPMX19_05780 0.44 -0.3 503,593 + MPMX19_05780 0.44 +0.3 503,593 + MPMX19_05780 0.44 -1.5 503,593 + MPMX19_05780 0.44 +0.1 503,593 + MPMX19_05780 0.44 -2.6 503,593 + MPMX19_05780 0.44 -0.8 503,593 + MPMX19_05780 0.44 -1.5 503,593 + MPMX19_05780 0.44 -0.2 503,593 + MPMX19_05780 0.44 -0.3 503,593 + MPMX19_05780 0.44 -0.6 503,593 + MPMX19_05780 0.44 -0.3 503,593 + MPMX19_05780 0.44 +0.5 503,593 + MPMX19_05780 0.44 -0.6 503,593 + MPMX19_05780 0.44 +0.7 503,593 + MPMX19_05780 0.44 -0.3 503,593 + MPMX19_05780 0.44 -0.7 503,593 + MPMX19_05780 0.44 +0.1 503,593 + MPMX19_05780 0.44 +0.3 503,593 + MPMX19_05780 0.44 -0.7 503,594 - MPMX19_05780 0.44 -0.2 503,594 - MPMX19_05780 0.44 -0.2 503,594 - MPMX19_05780 0.44 -0.9 503,594 - MPMX19_05780 0.44 -0.5 503,594 - MPMX19_05780 0.44 -0.6 503,594 - MPMX19_05780 0.44 -1.1 503,594 - MPMX19_05780 0.44 -1.5 503,594 - MPMX19_05780 0.44 +1.7 503,594 - MPMX19_05780 0.44 -0.9 503,594 - MPMX19_05780 0.44 +1.0 503,743 + MPMX19_05780 0.56 -0.4 503,743 + MPMX19_05780 0.56 -0.4 503,743 + MPMX19_05780 0.56 +0.1 503,743 + MPMX19_05780 0.56 -0.5 503,743 + MPMX19_05780 0.56 -1.8 503,743 + MPMX19_05780 0.56 +0.2 503,743 + MPMX19_05780 0.56 -1.9 503,744 - MPMX19_05780 0.56 -0.3 503,744 - MPMX19_05780 0.56 -0.8 503,744 - MPMX19_05780 0.56 -1.6 503,744 - MPMX19_05780 0.56 +0.2 503,744 - MPMX19_05780 0.56 +0.2 503,744 - MPMX19_05780 0.56 +1.1 503,744 - MPMX19_05780 0.56 -0.1 503,744 - MPMX19_05780 0.56 -0.9 503,744 - MPMX19_05780 0.56 -0.9 503,744 - MPMX19_05780 0.56 +0.3 503,744 - MPMX19_05780 0.56 +1.0 503,744 - MPMX19_05780 0.56 -2.5 503,744 - MPMX19_05780 0.56 -1.0 503,744 - MPMX19_05780 0.56 +1.1 503,744 - MPMX19_05780 0.56 +0.1 503,830 + MPMX19_05780 0.62 -2.4 503,830 + MPMX19_05780 0.62 +0.7 503,830 + MPMX19_05780 0.62 -0.9 503,830 + MPMX19_05780 0.62 +0.1 503,831 - MPMX19_05780 0.62 -0.7 503,881 + MPMX19_05780 0.66 -1.0 503,881 + MPMX19_05780 0.66 +1.7 503,881 + MPMX19_05780 0.66 -2.2 503,882 - MPMX19_05780 0.66 -0.5 503,882 - MPMX19_05780 0.66 -0.8
Or see this region's nucleotide sequence