Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05748

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05747 and MPMX19_05748 are separated by 315 nucleotidesMPMX19_05748 and MPMX19_05749 overlap by 4 nucleotides MPMX19_05747: MPMX19_05747 - Transcriptional regulatory protein DegU, at 468,041 to 468,763 _05747 MPMX19_05748: MPMX19_05748 - Response regulator SaeR, at 469,079 to 469,543 _05748 MPMX19_05749: MPMX19_05749 - Cyclic di-GMP phosphodiesterase response regulator RpfG, at 469,540 to 470,607 _05749 Position (kb) 469 470Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 468.601 kb on - strand, within MPMX19_05747at 468.646 kb on + strand, within MPMX19_05747at 468.647 kb on - strand, within MPMX19_05747at 468.802 kb on + strandat 468.802 kb on + strandat 468.802 kb on + strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.805 kb on + strandat 468.805 kb on + strandat 468.806 kb on - strandat 468.806 kb on - strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.823 kb on + strandat 468.823 kb on + strandat 468.823 kb on + strandat 468.824 kb on - strandat 468.824 kb on - strandat 468.824 kb on - strandat 468.857 kb on + strandat 468.858 kb on - strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.893 kb on - strandat 468.893 kb on - strandat 468.893 kb on - strandat 468.893 kb on - strandat 468.937 kb on + strandat 468.937 kb on + strandat 468.937 kb on + strandat 468.940 kb on + strandat 468.941 kb on - strandat 468.941 kb on - strandat 468.941 kb on - strandat 468.941 kb on - strandat 468.941 kb on - strandat 468.942 kb on - strandat 469.008 kb on + strandat 469.008 kb on + strandat 469.021 kb on - strandat 469.214 kb on + strand, within MPMX19_05748at 469.214 kb on + strand, within MPMX19_05748at 469.214 kb on + strand, within MPMX19_05748at 469.215 kb on - strand, within MPMX19_05748at 469.215 kb on - strand, within MPMX19_05748at 469.215 kb on - strand, within MPMX19_05748at 469.319 kb on + strand, within MPMX19_05748at 469.536 kb on + strandat 469.536 kb on + strandat 469.536 kb on + strandat 469.536 kb on + strandat 469.536 kb on + strandat 469.536 kb on + strandat 470.026 kb on + strand, within MPMX19_05749at 470.071 kb on + strand, within MPMX19_05749at 470.072 kb on - strand, within MPMX19_05749at 470.431 kb on + strand, within MPMX19_05749at 470.431 kb on + strand, within MPMX19_05749at 470.431 kb on + strand, within MPMX19_05749at 470.431 kb on + strand, within MPMX19_05749at 470.431 kb on + strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.432 kb on - strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.467 kb on + strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749at 470.468 kb on - strand, within MPMX19_05749

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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468,601 - MPMX19_05747 0.77 -0.2
468,646 + MPMX19_05747 0.84 +0.1
468,647 - MPMX19_05747 0.84 -1.4
468,802 + -0.3
468,802 + -0.0
468,802 + +2.4
468,803 - +0.1
468,803 - -0.9
468,803 - +1.0
468,803 - -1.5
468,805 + +0.7
468,805 + -2.8
468,806 - -1.1
468,806 - -1.6
468,821 + -1.1
468,821 + -0.4
468,821 + -0.4
468,821 + +0.3
468,822 - -1.8
468,822 - -1.0
468,822 - +0.7
468,822 - -0.9
468,823 + +0.1
468,823 + +0.1
468,823 + -3.0
468,824 - -1.6
468,824 - -1.3
468,824 - +0.3
468,857 + -0.6
468,858 - +0.3
468,875 + -0.0
468,875 + -0.5
468,875 + -1.1
468,875 + -0.9
468,876 - -1.6
468,876 - +0.3
468,876 - +0.4
468,876 - +0.5
468,876 - -0.6
468,892 + +0.4
468,892 + +0.1
468,892 + +1.0
468,892 + -0.4
468,893 - -1.2
468,893 - -0.0
468,893 - +0.0
468,893 - -0.4
468,937 + +0.5
468,937 + +0.7
468,937 + -1.0
468,940 + -0.9
468,941 - -0.3
468,941 - -0.2
468,941 - +2.3
468,941 - -1.8
468,941 - -2.0
468,942 - +0.5
469,008 + -0.0
469,008 + -0.6
469,021 - -1.8
469,214 + MPMX19_05748 0.29 -1.6
469,214 + MPMX19_05748 0.29 -1.7
469,214 + MPMX19_05748 0.29 -1.2
469,215 - MPMX19_05748 0.29 +0.4
469,215 - MPMX19_05748 0.29 -1.2
469,215 - MPMX19_05748 0.29 -1.1
469,319 + MPMX19_05748 0.52 -0.4
469,536 + -1.3
469,536 + -0.4
469,536 + +0.5
469,536 + -0.8
469,536 + +0.5
469,536 + -2.5
470,026 + MPMX19_05749 0.46 -0.6
470,071 + MPMX19_05749 0.50 -0.3
470,072 - MPMX19_05749 0.50 -1.0
470,431 + MPMX19_05749 0.83 +0.4
470,431 + MPMX19_05749 0.83 +1.3
470,431 + MPMX19_05749 0.83 -0.2
470,431 + MPMX19_05749 0.83 -0.2
470,431 + MPMX19_05749 0.83 -0.6
470,432 - MPMX19_05749 0.84 -0.3
470,432 - MPMX19_05749 0.84 -0.4
470,432 - MPMX19_05749 0.84 -2.4
470,432 - MPMX19_05749 0.84 -0.6
470,432 - MPMX19_05749 0.84 +1.4
470,432 - MPMX19_05749 0.84 +0.8
470,432 - MPMX19_05749 0.84 -0.5
470,432 - MPMX19_05749 0.84 -0.7
470,432 - MPMX19_05749 0.84 -1.1
470,467 + MPMX19_05749 0.87 +0.2
470,467 + MPMX19_05749 0.87 -0.2
470,467 + MPMX19_05749 0.87 -2.2
470,467 + MPMX19_05749 0.87 -0.6
470,467 + MPMX19_05749 0.87 -0.8
470,467 + MPMX19_05749 0.87 -0.2
470,467 + MPMX19_05749 0.87 -0.1
470,467 + MPMX19_05749 0.87 -0.2
470,467 + MPMX19_05749 0.87 -0.9
470,467 + MPMX19_05749 0.87 -0.2
470,468 - MPMX19_05749 0.87 -0.6
470,468 - MPMX19_05749 0.87 -0.9
470,468 - MPMX19_05749 0.87 +0.2
470,468 - MPMX19_05749 0.87 +0.4
470,468 - MPMX19_05749 0.87 +0.3
470,468 - MPMX19_05749 0.87 +0.4
470,468 - MPMX19_05749 0.87 -1.1
470,468 - MPMX19_05749 0.87 -2.5
470,468 - MPMX19_05749 0.87 +0.1
470,468 - MPMX19_05749 0.87 -0.8
470,468 - MPMX19_05749 0.87 +0.7
470,468 - MPMX19_05749 0.87 -0.9
470,468 - MPMX19_05749 0.87 -0.3
470,468 - MPMX19_05749 0.87 +0.3
470,468 - MPMX19_05749 0.87 +1.7
470,468 - MPMX19_05749 0.87 +0.6
470,468 - MPMX19_05749 0.87 +1.0
470,468 - MPMX19_05749 0.87 -1.1
470,468 - MPMX19_05749 0.87 -1.9

Or see this region's nucleotide sequence